1 |
+ |
2004-10-28 16:28 tim |
2 |
+ |
|
3 |
+ |
* src/utils/next_combination.hpp, |
4 |
+ |
test/utils/NextCombinationTestCase.cpp, |
5 |
+ |
test/utils/ReplaceWildCardTestCase.cpp: Done with combination |
6 |
+ |
|
7 |
+ |
2004-10-28 16:11 tim |
8 |
+ |
|
9 |
+ |
* src/utils/next_combination.hpp: change documentation of |
10 |
+ |
next_combination.hpp |
11 |
+ |
|
12 |
+ |
2004-10-28 15:41 tim |
13 |
+ |
|
14 |
+ |
* ChangeLog, src/utils/next_combination.hpp, |
15 |
+ |
test/utils/NextCombinationTestCase.cpp, |
16 |
+ |
test/utils/NextCombinationTestCase.hpp: ReplaceWildCard is working |
17 |
+ |
|
18 |
+ |
2004-10-28 15:01 tim |
19 |
+ |
|
20 |
+ |
* src/utils/next_combination.hpp: adding replace wildcard function |
21 |
+ |
|
22 |
+ |
2004-10-28 14:33 tim |
23 |
+ |
|
24 |
+ |
* src/utils/next_combination.hpp: Minor change |
25 |
+ |
|
26 |
+ |
2004-10-28 14:06 tim |
27 |
+ |
|
28 |
+ |
* ChangeLog, src/applications/simpleBuilder/MoLocator.hpp, |
29 |
+ |
src/applications/simpleBuilder/simpleBuilder.cpp, |
30 |
+ |
src/utils/next_combination.hpp, test/utils/Makefile, |
31 |
+ |
test/utils/NextCombinationTestCase.cpp, |
32 |
+ |
test/utils/ReplaceWildCardTestCase.cpp, |
33 |
+ |
test/utils/next_combination.hpp: STL next_permutation like |
34 |
+ |
next_combination is working |
35 |
+ |
|
36 |
+ |
2004-10-28 12:22 chrisfen |
37 |
+ |
|
38 |
+ |
* src/UseTheForce/WATER.cpp: fix of setDipoles |
39 |
+ |
|
40 |
+ |
2004-10-28 12:20 gezelter |
41 |
+ |
|
42 |
+ |
* src/UseTheForce/Shapes_FF.cpp: forgot to advance lines in the |
43 |
+ |
shapeFile |
44 |
+ |
|
45 |
+ |
2004-10-28 12:20 gezelter |
46 |
+ |
|
47 |
+ |
* samples/shape/linear.md: forgot the orientation line |
48 |
+ |
|
49 |
+ |
2004-10-28 11:56 gezelter |
50 |
+ |
|
51 |
+ |
* src/: UseTheForce/DUFF.cpp, UseTheForce/EAM_FF.cpp, |
52 |
+ |
UseTheForce/ForceFields.hpp, UseTheForce/LJFF.cpp, |
53 |
+ |
UseTheForce/WATER.cpp, types/AtomType.cpp: fixed duplicate |
54 |
+ |
declaration foo |
55 |
+ |
|
56 |
+ |
2004-10-28 11:55 gezelter |
57 |
+ |
|
58 |
+ |
* samples/lipid/5x5.md: uncommented .in line |
59 |
+ |
|
60 |
+ |
2004-10-28 10:42 tim |
61 |
+ |
|
62 |
+ |
* test/utils/: Makefile, NextCombinationTestCase.cpp, |
63 |
+ |
NextCombinationTestCase.hpp, next_combination.hpp: next_combination |
64 |
+ |
in progress |
65 |
+ |
|
66 |
+ |
2004-10-28 10:15 tim |
67 |
+ |
|
68 |
+ |
* test/utils/: NextCombinationTestCase.cpp, |
69 |
+ |
NextCombinationTestCase.hpp: adding next_combination test case |
70 |
+ |
|
71 |
+ |
2004-10-28 10:02 tim |
72 |
+ |
|
73 |
+ |
* test/utils/next_combination.hpp: STL Compatible combination |
74 |
+ |
sequence generator |
75 |
+ |
|
76 |
+ |
2004-10-28 01:23 tim |
77 |
+ |
|
78 |
+ |
* test/utils/: GenerateCombination.hpp, |
79 |
+ |
ReplaceWildCardTestCase.cpp: bug fixed in GenerateCombination.hpp |
80 |
+ |
|
81 |
+ |
2004-10-28 01:16 tim |
82 |
+ |
|
83 |
+ |
* test/utils/GenerateCombination.hpp: a STL next_permutaion like |
84 |
+ |
next_combination function. |
85 |
+ |
|
86 |
+ |
2004-10-27 22:27 tim |
87 |
+ |
|
88 |
+ |
* test/utils/ReplaceWildCard.hpp: no message |
89 |
+ |
|
90 |
+ |
2004-10-27 22:14 tim |
91 |
+ |
|
92 |
+ |
* test/utils/: ReplaceWildCard.hpp, ReplaceWildCardTestCase.cpp: |
93 |
+ |
ReplaceWildCard(recursive version) is working, need refactoring. An |
94 |
+ |
iterative version is on the way |
95 |
+ |
|
96 |
+ |
2004-10-27 21:28 tim |
97 |
+ |
|
98 |
+ |
* test/utils/: Makefile, ReplaceWildCard.hpp, |
99 |
+ |
ReplaceWildCardTestCase.cpp: ReplaceWildCard in progress |
100 |
+ |
|
101 |
+ |
2004-10-27 21:08 tim |
102 |
+ |
|
103 |
+ |
* test/utils/: ReplaceWildCardTestCase.cpp, |
104 |
+ |
ReplaceWildCardTestCase.hpp: Adding Test Case for ReplaceWildCard |
105 |
+ |
|
106 |
+ |
2004-10-27 18:17 tim |
107 |
+ |
|
108 |
+ |
* test/utils/ReplaceWildCard.hpp: adding ReplaceWildCard.hpp, need |
109 |
+ |
test |
110 |
+ |
|
111 |
+ |
2004-10-27 01:25 tim |
112 |
+ |
|
113 |
+ |
* src/utils/TupleMatcher.hpp: Adding Generic TupleMatcher, wild |
114 |
+ |
char matching is on the way |
115 |
+ |
|
116 |
+ |
2004-10-27 01:07 tim |
117 |
+ |
|
118 |
+ |
* src/utils/Tuple.hpp: Adding Generic Tuple3 and Tuple4 |
119 |
+ |
|
120 |
+ |
2004-10-26 22:00 gezelter |
121 |
+ |
|
122 |
+ |
* src/UseTheForce/: EAM_FF.cpp, ForceFields.hpp: bug fix |
123 |
+ |
|
124 |
+ |
2004-10-26 21:20 gezelter |
125 |
+ |
|
126 |
+ |
* src/UseTheForce/ForceFields.hpp: subclass foo |
127 |
+ |
|
128 |
+ |
2004-10-26 21:16 gezelter |
129 |
+ |
|
130 |
+ |
* src/UseTheForce/: EAM_FF.cpp, LJFF.cpp, WATER.cpp: more char* -> |
131 |
+ |
string conversion |
132 |
+ |
|
133 |
+ |
2004-10-26 19:01 gezelter |
134 |
+ |
|
135 |
+ |
* src/: UseTheForce/DUFF.cpp, UseTheForce/EAM_FF.cpp, |
136 |
+ |
UseTheForce/ForceFields.hpp, brains/SimSetup.cpp, |
137 |
+ |
brains/SimSetup.hpp: char* -> string |
138 |
+ |
|
139 |
+ |
2004-10-26 17:25 gezelter |
140 |
+ |
|
141 |
+ |
* src/types/: AtomType.cpp, AtomType.hpp, DirectionalAtomType.hpp, |
142 |
+ |
Makefile, ShapeAtomType.cpp, ShapeAtomType.hpp, ShapeType.cpp, |
143 |
+ |
ShapeType.hpp: Making ShapeType into a ShapeAtomType, fixing some |
144 |
+ |
isXXX |
145 |
+ |
|
146 |
+ |
2004-10-26 17:25 gezelter |
147 |
+ |
|
148 |
+ |
* src/math/: RealSphericalHarmonic.cpp, RealSphericalHarmonic.hpp: |
149 |
+ |
define name collision |
150 |
+ |
|
151 |
+ |
2004-10-26 17:24 gezelter |
152 |
+ |
|
153 |
+ |
* src/: UseTheForce/DUFF.cpp, UseTheForce/EAM_FF.cpp, |
154 |
+ |
UseTheForce/ForceFields.hpp, UseTheForce/LJFF.cpp, |
155 |
+ |
UseTheForce/Makefile, UseTheForce/Shapes_FF.cpp, |
156 |
+ |
UseTheForce/WATER.cpp, UseTheForce/doForces.F90, |
157 |
+ |
UseTheForce/DarkSide/shapes_interface.h, brains/SimSetup.cpp: |
158 |
+ |
forcefield refactoring for shapes |
159 |
+ |
|
160 |
+ |
2004-10-26 17:24 gezelter |
161 |
+ |
|
162 |
+ |
* samples/shape/: 5CB.shape, 8CB.shape, C60.shape, C70.shape, |
163 |
+ |
Shapes.frc, cholesterol.shape, ethylBenzene.shape, linear.in, |
164 |
+ |
linear.md, linear.shape, toluene.shape: adding sample shape |
165 |
+ |
directory |
166 |
+ |
|
167 |
+ |
2004-10-26 17:19 tim |
168 |
+ |
|
169 |
+ |
* ChangeLog, src/brains/DataStorage.cpp, |
170 |
+ |
src/brains/DataStorage.hpp, src/brains/Snapshot.hpp, |
171 |
+ |
test/brains/DataStorageTestCase.cpp, |
172 |
+ |
test/brains/DataStorageTestCase.hpp, test/brains/Makefile: |
173 |
+ |
DataStorage passes unit test |
174 |
+ |
|
175 |
+ |
2004-10-26 13:03 chrisfen |
176 |
+ |
|
177 |
+ |
* src/UseTheForce/DarkSide/: shapes.F90, shapes_interface.h: |
178 |
+ |
Changes to help advance shapes |
179 |
+ |
|
180 |
+ |
2004-10-26 13:02 chrisfen |
181 |
+ |
|
182 |
+ |
* src/UseTheForce/: ForceFields.hpp, Shapes_FF.cpp: Changes to |
183 |
+ |
Shapes force field reader |
184 |
+ |
|
185 |
+ |
2004-10-26 12:28 tim |
186 |
+ |
|
187 |
+ |
* src/brains/Snapshot.hpp, test/brains/RigidBody.hpp: Snaphot and |
188 |
+ |
SnapshotTestCase in progress |
189 |
+ |
|
190 |
+ |
2004-10-25 17:46 tim |
191 |
+ |
|
192 |
+ |
* ChangeLog, src/math/RectMatrix.hpp, src/math/SquareMatrix.hpp, |
193 |
+ |
src/math/SquareMatrix3.hpp, src/math/Vector.hpp, |
194 |
+ |
src/math/Vector3.hpp, test/brains/StuntDouble.hpp, |
195 |
+ |
test/math/RectMatrixTestCase.cpp, test/math/Vector3TestCase.cpp, |
196 |
+ |
test/math/VectorTestCase.cpp: add getArray function to RectMatrix |
197 |
+ |
and Vector classes |
198 |
+ |
|
199 |
+ |
2004-10-25 12:03 tim |
200 |
+ |
|
201 |
+ |
* ChangeLog, src/utils/GenericFactory.hpp, |
202 |
+ |
test/utils/GenericFactoryTestCase.cpp, |
203 |
+ |
test/utils/GenericFactoryTestCase.hpp, test/utils/Makefile: adding |
204 |
+ |
GenericFactory Test Case. GenericFactory now can bed used to creat |
205 |
+ |
ForcefieldFactory and IntegratorFactory etc. |
206 |
+ |
|
207 |
+ |
2004-10-24 23:08 tim |
208 |
+ |
|
209 |
+ |
* src/: brains/SimModel.hpp, brains/SimSnapshotManager.cpp, |
210 |
+ |
brains/SimSnapshotManager.hpp, brains/Snapshot.hpp, |
211 |
+ |
brains/SnapshotManager.hpp, utils/GenericFactory.hpp: more classes |
212 |
+ |
get reconstructed |
213 |
+ |
|
214 |
+ |
2004-10-24 02:55 tim |
215 |
+ |
|
216 |
+ |
* src/utils/GenericFactory.hpp: GenericFactory pass unit test |
217 |
+ |
|
218 |
+ |
2004-10-23 18:09 tim |
219 |
+ |
|
220 |
+ |
* test/brains/: Atom.hpp, DirectionalAtom.hpp, RigidBody.hpp, |
221 |
+ |
StuntDouble.cpp, StuntDouble.hpp, Atom.cpp, DirectioanlAtom.cpp, |
222 |
+ |
RigidBody.cpp: Refactoring in progress |
223 |
+ |
|
224 |
+ |
2004-10-22 18:09 tim |
225 |
+ |
|
226 |
+ |
* ChangeLog, src/brains/Snapshot.hpp, |
227 |
+ |
src/brains/SnapshotManager.hpp, src/math/SquareMatrix.hpp, |
228 |
+ |
test/brains/SnapshotTestCase.cpp, test/brains/SnapshotTestCase.hpp, |
229 |
+ |
test/brains/StuntDouble.hpp: more work in Snapshot |
230 |
+ |
|
231 |
+ |
2004-10-22 17:59 chrisfen |
232 |
+ |
|
233 |
+ |
* src/: UseTheForce/LJFF.cpp, |
234 |
+ |
UseTheForce/DarkSide/atype_interface.h, types/AtomType.cpp: Dear |
235 |
+ |
god! It runs and conserves energy! |
236 |
+ |
|
237 |
+ |
2004-10-22 17:54 chrisfen |
238 |
+ |
|
239 |
+ |
* src/types/: AtomType.cpp, AtomType.hpp: strDUP not strCOPY |
240 |
+ |
|
241 |
+ |
2004-10-22 17:53 chrisfen |
242 |
+ |
|
243 |
+ |
* src/: UseTheForce/DUFF.cpp, UseTheForce/EAM_FF.cpp, |
244 |
+ |
UseTheForce/LJFF.cpp, UseTheForce/Shapes_FF.cpp, |
245 |
+ |
UseTheForce/WATER.cpp, UseTheForce/doForces.F90, |
246 |
+ |
brains/SimInfo.cpp, brains/SimInfo.hpp: fixey fixey the breakey |
247 |
+ |
breakey |
248 |
+ |
|
249 |
+ |
2004-10-22 17:53 chrisfen |
250 |
+ |
|
251 |
+ |
* make/Makefile.in: compiler flags |
252 |
+ |
|
253 |
+ |
2004-10-22 16:20 gezelter |
254 |
+ |
|
255 |
+ |
* src/: UseTheForce/DUFF.cpp, UseTheForce/EAM_FF.cpp, |
256 |
+ |
UseTheForce/LJFF.cpp, UseTheForce/doForces.F90, |
257 |
+ |
brains/fSimulation.h, types/AtomType.hpp, |
258 |
+ |
types/DirectionalAtomType.hpp: fixey fixey |
259 |
+ |
|
260 |
+ |
2004-10-22 15:22 gezelter |
261 |
+ |
|
262 |
+ |
* src/UseTheForce/DarkSide/: LJ.F90, atype.F90, atype_interface.h, |
263 |
+ |
charge.F90, charge_interface.h, dipole.F90, dipole_interface.h, |
264 |
+ |
lj_interface.h, shapes.F90, simulation.F90: Added un-busticated |
265 |
+ |
fortran files and c/Fortran interfaces |
266 |
+ |
|
267 |
+ |
2004-10-22 15:21 gezelter |
268 |
+ |
|
269 |
+ |
* src/types/: AtomType.cpp, AtomType.hpp, AtomTypeProperties.h, |
270 |
+ |
DirectionalAtomType.hpp, Makefile: More on AtomType and |
271 |
+ |
DirectionalAtomType |
272 |
+ |
|
273 |
+ |
2004-10-22 09:47 gezelter |
274 |
+ |
|
275 |
+ |
* src/types/AtomType.hpp: Adding AtomType |
276 |
+ |
|
277 |
+ |
2004-10-21 16:31 tim |
278 |
+ |
|
279 |
+ |
* ChangeLog, src/brains/Snapshot.hpp, |
280 |
+ |
src/brains/SnapshotManager.hpp, src/math/RectMatrix.hpp, |
281 |
+ |
src/math/SquareMatrix.hpp, src/math/SquareMatrix3.hpp, |
282 |
+ |
src/math/Vector.hpp, src/math/Vector3.hpp, |
283 |
+ |
test/math/RectMatrixTestCase.cpp, test/math/VectorTestCase.cpp: |
284 |
+ |
Snapshot and SnapshotManager in progress |
285 |
+ |
|
286 |
+ |
2004-10-21 16:30 tim |
287 |
+ |
|
288 |
+ |
* test/brains/: BrainsTest.cpp, Makefile, |
289 |
+ |
SnapshotManagerTestCase.cpp, SnapshotManagerTestCase.hpp, |
290 |
+ |
SnapshotTestCase.cpp, SnapshotTestCase.hpp: adding test case for |
291 |
+ |
Snapshot and snapshotManager. |
292 |
+ |
|
293 |
+ |
2004-10-21 15:15 gezelter |
294 |
+ |
|
295 |
+ |
* src/: UseTheForce/DUFF.cpp, UseTheForce/EAM_FF.cpp, |
296 |
+ |
UseTheForce/ForceFields.cpp, UseTheForce/ForceFields.hpp, |
297 |
+ |
UseTheForce/LJFF.cpp, UseTheForce/Shapes_FF.cpp, |
298 |
+ |
UseTheForce/WATER.cpp, UseTheForce/doForces.F90, |
299 |
+ |
UseTheForce/doForces_interface.h, UseTheForce/fForceField.h, |
300 |
+ |
UseTheForce/DarkSide/LJ.F90, UseTheForce/DarkSide/lj_interface.h, |
301 |
+ |
brains/SimSetup.cpp, types/AtomTypeProperties.h: Breaky Breaky. |
302 |
+ |
Fixey Fixey. |
303 |
+ |
|
304 |
+ |
2004-10-21 11:32 tim |
305 |
+ |
|
306 |
+ |
* src/utils/GenericData.cpp, src/utils/Makefile, |
307 |
+ |
test/utils/Makefile, test/utils/UtilTest: remove some junk files |
308 |
+ |
|
309 |
+ |
2004-10-21 11:24 tim |
310 |
+ |
|
311 |
+ |
* test/utils/GenericData.hpp: remove backup of GenericData.hpp |
312 |
+ |
|
313 |
+ |
2004-10-21 11:22 tim |
314 |
+ |
|
315 |
+ |
* ChangeLog, src/brains/SimSetup.cpp, |
316 |
+ |
src/constraints/ZConstraint.cpp, src/constraints/ZconsData.hpp, |
317 |
+ |
src/integrators/NPT.cpp, src/integrators/NPTf.cpp, |
318 |
+ |
src/integrators/NPTi.cpp, src/integrators/NPTxyz.cpp, |
319 |
+ |
src/integrators/NVT.cpp, src/io/DumpReader.cpp, |
320 |
+ |
src/io/InitializeFromFile.cpp, src/io/ZConsReader.cpp, |
321 |
+ |
src/io/ZConsWriter.hpp, src/primitives/StuntDouble.hpp, |
322 |
+ |
src/utils/GenericData.cpp, src/utils/GenericData.hpp, |
323 |
+ |
src/visitors/AtomData.hpp, src/visitors/AtomVisitor.cpp, |
324 |
+ |
src/visitors/AtomVisitor.hpp, src/visitors/CompositeVisitor.cpp, |
325 |
+ |
src/visitors/CompositeVisitor.hpp, src/visitors/OtherVisitor.cpp, |
326 |
+ |
src/visitors/OtherVisitor.hpp, src/visitors/RigidBodyVisitor.cpp, |
327 |
+ |
src/visitors/RigidBodyVisitor.hpp, src/visitors/ZconsVisitor.cpp, |
328 |
+ |
src/visitors/ZconsVisitor.hpp: replace old GebericData with new |
329 |
+ |
GenericData |
330 |
+ |
|
331 |
+ |
2004-10-21 10:25 chuckv |
332 |
+ |
|
333 |
+ |
* src/UseTheForce/DarkSide/: LJ.F90, eam.F90: Added newLJtype to lj |
334 |
+ |
module. |
335 |
+ |
|
336 |
+ |
2004-10-21 10:24 chuckv |
337 |
+ |
|
338 |
+ |
* src/UseTheForce/DarkSide/lj_interface.h: Added interface for |
339 |
+ |
fortran lj module. |
340 |
+ |
|
341 |
+ |
2004-10-20 17:54 tim |
342 |
+ |
|
343 |
+ |
* ChangeLog, src/utils/PropertyMap.cpp, src/utils/PropertyMap.hpp, |
344 |
+ |
test/utils/GenericDataTestCase.cpp, test/utils/Makefile, |
345 |
+ |
test/utils/PropertyMapTestCase.cpp, |
346 |
+ |
test/utils/PropertyMapTestCase.hpp, test/utils/UtilTest: |
347 |
+ |
GenericData and PropertyMap pass unit test. |
348 |
+ |
|
349 |
+ |
2004-10-20 16:52 gezelter |
350 |
+ |
|
351 |
+ |
* src/UseTheForce/: DUFF.cpp, WATER.cpp, DarkSide/sticky.F90, |
352 |
+ |
DarkSide/sticky_interface.h: fixed a fortran name problem |
353 |
+ |
|
354 |
+ |
2004-10-20 16:38 tim |
355 |
+ |
|
356 |
+ |
* test/utils/: GenericData.hpp, GenericDataTestCase.cpp, |
357 |
+ |
GenericDataTestCase.hpp, Makefile, PropertyMapTestCase.hpp, |
358 |
+ |
UtilTest, UtilTest.cpp: adding generic data test case |
359 |
+ |
|
360 |
+ |
2004-10-20 16:16 chuckv |
361 |
+ |
|
362 |
+ |
* configure, ac-tools/aclocal.m4, |
363 |
+ |
src/UseTheForce/DarkSide/Makefile, |
364 |
+ |
src/UseTheForce/DarkSide/mpiSimulation.F90, |
365 |
+ |
src/UseTheForce/DarkSide/mpiSimulation_interface.h, |
366 |
+ |
src/UseTheForce/DarkSide/simParallel.F90, |
367 |
+ |
src/UseTheForce/DarkSide/simParallel_interface.h, |
368 |
+ |
src/brains/mpiSimulation.cpp, src/brains/mpiSimulation.hpp: |
369 |
+ |
Fortran/C++ interface de-obfuscation project appears to be |
370 |
+ |
complete! Woo hoo! |
371 |
+ |
|
372 |
+ |
2004-10-20 15:47 chuckv |
373 |
+ |
|
374 |
+ |
* src/UseTheForce/: fortranWrapDefines.hpp, fortranWrappers.cpp, |
375 |
+ |
fortranWrappers.hpp: Fortran/C++ interface de-obfuscation project |
376 |
+ |
continues |
377 |
+ |
|
378 |
+ |
2004-10-20 15:46 chuckv |
379 |
+ |
|
380 |
+ |
* src/: UseTheForce/DUFF.cpp, UseTheForce/EAM_FF.cpp, |
381 |
+ |
UseTheForce/ForceFields.cpp, UseTheForce/ForceFields.hpp, |
382 |
+ |
UseTheForce/LJFF.cpp, UseTheForce/Makefile, UseTheForce/WATER.cpp, |
383 |
+ |
UseTheForce/doForces_interface.h, |
384 |
+ |
UseTheForce/notifyCutoffs_interface.h, UseTheForce/wrappers.F90, |
385 |
+ |
UseTheForce/DarkSide/atype_interface.h, |
386 |
+ |
UseTheForce/DarkSide/eam_interface.h, |
387 |
+ |
UseTheForce/DarkSide/gb_interface.h, |
388 |
+ |
UseTheForce/DarkSide/mpiSimulation_interface.h, |
389 |
+ |
UseTheForce/DarkSide/shapes_interface.h, |
390 |
+ |
UseTheForce/DarkSide/simulation_interface.h, |
391 |
+ |
UseTheForce/DarkSide/sticky_interface.h, brains/ForceFields.cpp, |
392 |
+ |
brains/SimInfo.cpp, brains/SimInfo.hpp: Fortran/C++ interface |
393 |
+ |
de-obfuscation project (It is a very long story) |
394 |
+ |
|
395 |
+ |
2004-10-20 13:07 tim |
396 |
+ |
|
397 |
+ |
* ChangeLog, src/math/SquareMatrix.hpp, src/math/SquareMatrix3.hpp, |
398 |
+ |
test/math/SquareMatrix3TestCase.cpp, |
399 |
+ |
test/math/SquareMatrixTestCase.cpp, |
400 |
+ |
test/math/SquareMatrixTestCase.hpp: Math library pass the unit test |
401 |
+ |
|
402 |
+ |
2004-10-20 00:52 tim |
403 |
+ |
|
404 |
+ |
* src/brains/: Snapshot.hpp, SnapshotManager.hpp: Snapshot and |
405 |
+ |
SnapshotManager in design phase |
406 |
+ |
|
407 |
+ |
2004-10-19 23:54 gezelter |
408 |
+ |
|
409 |
+ |
* src/: brains/SimSetup.cpp, utils/StringUtils.cpp: namespace |
410 |
+ |
problem prevented linking |
411 |
+ |
|
412 |
+ |
2004-10-19 23:54 gezelter |
413 |
+ |
|
414 |
+ |
* src/UseTheForce/Shapes_FF.cpp: fixed include |
415 |
+ |
|
416 |
+ |
2004-10-19 23:26 gezelter |
417 |
+ |
|
418 |
+ |
* src/utils/: Makefile, definitions.F90, definitions_module.F90, |
419 |
+ |
oopseMPI.F90, oopseMPI_module.F90, status.F90, status_module.F90: |
420 |
+ |
more fortran name mangling |
421 |
+ |
|
422 |
+ |
2004-10-19 23:23 gezelter |
423 |
+ |
|
424 |
+ |
* src/profiling/timing.F90: yet more fortran renaming |
425 |
+ |
|
426 |
+ |
2004-10-19 23:19 gezelter |
427 |
+ |
|
428 |
+ |
* src/UseTheForce/: Makefile, doForces.F90, doForces_interface.h, |
429 |
+ |
do_Forces.F90, do_Forces.h, notifyCutoffs.F90, |
430 |
+ |
notifyCutoffs_interface.h, notifycutoffs_module_interface.h, |
431 |
+ |
wrappers.F90: Fortran name cleanup continues |
432 |
+ |
|
433 |
+ |
2004-10-19 23:12 gezelter |
434 |
+ |
|
435 |
+ |
* src/UseTheForce/DarkSide/: atype.F90, simulation.F90: fixing some |
436 |
+ |
broken fortran stuff |
437 |
+ |
|
438 |
+ |
2004-10-19 23:02 gezelter |
439 |
+ |
|
440 |
+ |
* src/UseTheForce/DarkSide/: LJ.F90, Makefile, atype.F90, |
441 |
+ |
atype_interface.h, atype_module.F90, atype_module_interface.h, |
442 |
+ |
calc_LJ_FF.F90, calc_charge_charge.F90, calc_dipole_dipole.F90, |
443 |
+ |
calc_eam.F90, calc_gb.F90, calc_reaction_field.F90, |
444 |
+ |
calc_shapes.F90, calc_sticky_pair.F90, charge.F90, dipole.F90, |
445 |
+ |
eam.F90, eam_interface.h, eam_module_inteface.h, gb.F90, |
446 |
+ |
gb_interface.h, gb_module_interface.h, mpiSimulation.F90, |
447 |
+ |
mpiSimulation_interface.h, mpiSimulation_module.F90, |
448 |
+ |
mpisimulation_module_interface.h, reactionField.F90, shapes.F90, |
449 |
+ |
shapes_interface.h, shapes_module.h, simulation.F90, |
450 |
+ |
simulation_interface.h, simulation_module.F90, |
451 |
+ |
simulation_module_interface.h, sticky.F90, sticky_interface.h, |
452 |
+ |
sticky_pair_module_interface.h, switch_module.F90, switcheroo.F90: |
453 |
+ |
name sanity on the fortran side |
454 |
+ |
|
455 |
+ |
2004-10-19 19:18 tim |
456 |
+ |
|
457 |
+ |
* test/math/SquareMatrix3TestCase.hpp: [no log message] |
458 |
+ |
|
459 |
+ |
2004-10-19 18:01 tim |
460 |
+ |
|
461 |
+ |
* src/math/RectMatrix.hpp, src/math/SquareMatrix.hpp, |
462 |
+ |
src/math/SquareMatrix3.hpp, test/math/SquareMatrix3TestCase.cpp: |
463 |
+ |
except diagonalize(), all of functions in math library pass the |
464 |
+ |
test |
465 |
+ |
|
466 |
+ |
2004-10-19 17:43 chuckv |
467 |
+ |
|
468 |
+ |
* src/UseTheForce/do_Forces.h: Added correct prototypes for |
469 |
+ |
C-fortran interface functions. |
470 |
+ |
|
471 |
+ |
2004-10-19 17:37 chuckv |
472 |
+ |
|
473 |
+ |
* src/UseTheForce/DarkSide/: atype_module_interface.h, |
474 |
+ |
eam_module_inteface.h, gb_module_interface.h, |
475 |
+ |
mpisimulation_module_interface.h, simulation_module_interface.h, |
476 |
+ |
sticky_pair_module_interface.h: Added correct prototypes for |
477 |
+ |
C-fortran interface functions. |
478 |
+ |
|
479 |
+ |
2004-10-19 16:28 tim |
480 |
+ |
|
481 |
+ |
* ChangeLog, src/math/Quaternion.hpp, src/math/RectMatrix.hpp, |
482 |
+ |
src/math/SquareMatrix.hpp, src/math/Vector.hpp, |
483 |
+ |
test/math/QuaternionTestCase.cpp, test/math/QuaternionTestCase.hpp, |
484 |
+ |
test/math/RectMatrixTestCase.cpp, |
485 |
+ |
test/math/SquareMatrix3TestCase.cpp, test/math/Vector3TestCase.cpp, |
486 |
+ |
test/math/Vector3TestCase.hpp, test/math/VectorTestCase.cpp: more |
487 |
+ |
bugs get fixed at math library |
488 |
+ |
|
489 |
+ |
2004-10-19 15:43 chuckv |
490 |
+ |
|
491 |
+ |
* src/UseTheForce/: DarkSide/atype_module_interface.h, |
492 |
+ |
DarkSide/eam_module_inteface.h, DarkSide/gb_module_interface.h, |
493 |
+ |
DarkSide/mpisimulation_module_interface.h, |
494 |
+ |
DarkSide/simulation_module_interface.h, |
495 |
+ |
DarkSide/sticky_pair_module_interface.h, DarkSide/calc_eam.F90, |
496 |
+ |
DarkSide/atype_module.F90, DarkSide/calc_gb.F90, |
497 |
+ |
DarkSide/calc_sticky_pair.F90, DarkSide/mpiSimulation_module.F90, |
498 |
+ |
DarkSide/simulation_module.F90, do_Forces.F90, |
499 |
+ |
fortranWrapDefines.hpp, mpiComponentPlan.h, notifyCutoffs.F90, |
500 |
+ |
notifycutoffs_module_interface.h: Added new files for fortran |
501 |
+ |
interface. |
502 |
+ |
|
503 |
+ |
2004-10-19 15:43 gezelter |
504 |
+ |
|
505 |
+ |
* src/UseTheForce/Makefile: regressing |
506 |
+ |
|
507 |
+ |
2004-10-19 15:40 gezelter |
508 |
+ |
|
509 |
+ |
* src/: UseTheForce/DarkSide/calc_shapes.F90, |
510 |
+ |
UseTheForce/DarkSide/shapes_module.h, utils/StringUtils.cpp: |
511 |
+ |
working on shapes for portability |
512 |
+ |
|
513 |
+ |
2004-10-19 15:40 gezelter |
514 |
+ |
|
515 |
+ |
* src/UseTheForce/: Makefile, Shapes_FF.cpp: working on shapes |
516 |
+ |
|
517 |
+ |
2004-10-19 13:21 chrisfen |
518 |
+ |
|
519 |
+ |
* src/utils/: StringUtils.cpp, StringUtils.hpp: changed around |
520 |
+ |
findBegin |
521 |
+ |
|
522 |
+ |
2004-10-18 23:34 tim |
523 |
+ |
|
524 |
+ |
* src/math/Vector.hpp, test/math/RectMatrixTestCase.cpp: more bugs |
525 |
+ |
are fixed in Vector class |
526 |
+ |
|
527 |
+ |
2004-10-18 23:28 tim |
528 |
+ |
|
529 |
+ |
* test/math/: RectMatrixTestCase.cpp, RectMatrixTestCase.hpp: fix |
530 |
+ |
some bugs in RectMatrixTestCase |
531 |
+ |
|
532 |
+ |
2004-10-18 23:21 tim |
533 |
+ |
|
534 |
+ |
* src/math/Vector.hpp, test/math/RectMatrixTestCase.cpp, |
535 |
+ |
test/math/RectMatrixTestCase.hpp, test/math/Vector3TestCase.cpp, |
536 |
+ |
test/math/Vector3TestCase.hpp, test/math/VectorTestCase.cpp, |
537 |
+ |
test/math/VectorTestCase.hpp: implement more test cases |
538 |
+ |
|
539 |
+ |
2004-10-18 18:13 tim |
540 |
+ |
|
541 |
+ |
* ChangeLog, make/Doxyfile, src/math/Matrix3x3d.hpp, |
542 |
+ |
src/math/RectMatrix.hpp, src/math/SquareMatrix.hpp, |
543 |
+ |
src/math/SquareMatrix3.hpp, src/math/Vector.hpp, |
544 |
+ |
src/utils/StringTokenizer.hpp, test/math/Makefile, |
545 |
+ |
test/math/VectorTestCase.cpp, test/math/VectorTestCase.hpp: more |
546 |
+ |
tests on math library |
547 |
+ |
|
548 |
+ |
2004-10-18 16:03 tim |
549 |
+ |
|
550 |
+ |
* test/math/: Makefile, QuaternionTestCase.cpp, |
551 |
+ |
QuaternionTestCase.hpp, RectMatrixTestCase.cpp, |
552 |
+ |
SquareMatrix3TestCase.cpp, Vector3TestCase.cpp, |
553 |
+ |
Vector3TestCase.hpp, VectorTestCase.cpp, VectorTestCase.hpp: adding |
554 |
+ |
more testing units |
555 |
+ |
|
556 |
+ |
2004-10-18 12:07 tim |
557 |
+ |
|
558 |
+ |
* src/: brains/SimSetup.hpp, io/FileReader.hpp, math/Euler3.cpp, |
559 |
+ |
math/Euler3.hpp, math/Quaternion.hpp, math/SquareMatrix3.hpp, |
560 |
+ |
math/Vector3.hpp, types/ShapeType.cpp, types/ShapeType.hpp, |
561 |
+ |
utils/GenericFactory.hpp: fix some bugs in Quaternion class |
562 |
+ |
|
563 |
+ |
2004-10-18 11:30 gezelter |
564 |
+ |
|
565 |
+ |
* src/math/: RealSphericalHarmonic.cpp, RealSphericalHarmonic.hpp: |
566 |
+ |
Your basic run of the mill real-valued versions of Y_l^m(\theta, |
567 |
+ |
\phi) |
568 |
+ |
|
569 |
+ |
2004-10-18 11:29 gezelter |
570 |
+ |
|
571 |
+ |
* src/: math/Makefile, math/Matrix3x3d.hpp, math/Vector3.hpp, |
572 |
+ |
types/Makefile, types/ShapeType.cpp, types/ShapeType.hpp, |
573 |
+ |
utils/StringUtils.cpp, utils/StringUtils.hpp: Working on getting |
574 |
+ |
Shapes into OOPSE |
575 |
+ |
|
576 |
+ |
2004-10-18 10:21 gezelter |
577 |
+ |
|
578 |
+ |
* src/types/: ShapeType.cpp, ShapeType.hpp: Added ShapeType |
579 |
+ |
|
580 |
+ |
2004-10-18 00:23 tim |
581 |
+ |
|
582 |
+ |
* test/math/VectorTestCase.hpp: adding vector test case |
583 |
+ |
|
584 |
+ |
2004-10-18 00:23 tim |
585 |
+ |
|
586 |
+ |
* src/utils/GenericFactory.hpp: adding generic factory and vector |
587 |
+ |
test case |
588 |
+ |
|
589 |
|
2004-10-16 20:19 tim |
590 |
|
|
591 |
|
* src/math/: Quaternion.hpp, RectMatrix.hpp, SquareMatrix.hpp, |
949 |
|
|
950 |
|
2004-09-29 12:56 gezelter |
951 |
|
|
952 |
< |
* make/: Make.conf.in, Makefile.in, _files/style.css: Working on |
365 |
< |
make stuff |
952 |
> |
* make/: Make.conf.in, Makefile.in: Working on make stuff |
953 |
|
|
954 |
|
2004-09-29 12:46 tim |
955 |
|
|
1215 |
|
src/visitors/OtherVisitor.cpp, src/visitors/OtherVisitor.hpp, |
1216 |
|
src/visitors/RigidBodyVisitor.cpp, |
1217 |
|
src/visitors/RigidBodyVisitor.hpp, src/visitors/ZconsVisitor.cpp, |
1218 |
< |
src/visitors/ZconsVisitor.hpp, make/Makefile, |
632 |
< |
make/_files/style.css, samples/Makefile.in, |
1218 |
> |
src/visitors/ZconsVisitor.hpp, make/Makefile, samples/Makefile.in, |
1219 |
|
samples/metals/Au-Core-Ag-Shell_Nanoparticle.in, |
1220 |
|
samples/metals/Au-Core-Ag-Shell_Nanoparticle.md, |
1221 |
|
samples/metals/Au_bulk_FBD.md, samples/metals/Au_bulk_voter.md, |
1390 |
|
src/visitors/OtherVisitor.cpp, src/visitors/OtherVisitor.hpp, |
1391 |
|
src/visitors/RigidBodyVisitor.cpp, |
1392 |
|
src/visitors/RigidBodyVisitor.hpp, src/visitors/ZconsVisitor.cpp, |
1393 |
< |
src/visitors/ZconsVisitor.hpp, make/Makefile, |
808 |
< |
make/_files/style.css, samples/Makefile.in, |
1393 |
> |
src/visitors/ZconsVisitor.hpp, make/Makefile, samples/Makefile.in, |
1394 |
|
samples/metals/Au-Core-Ag-Shell_Nanoparticle.in, |
1395 |
|
samples/metals/Au-Core-Ag-Shell_Nanoparticle.md, |
1396 |
|
samples/metals/Au_bulk_FBD.md, samples/metals/Au_bulk_voter.md, |