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Comparing trunk/OOPSE-3.0/ChangeLog (file contents):
Revision 1630 by tim, Thu Oct 21 21:31:39 2004 UTC vs.
Revision 1677 by tim, Thu Oct 28 20:41:18 2004 UTC

# Line 1 | Line 1
1 + 2004-10-28 14:06  tim
2 +
3 +        * ChangeLog, src/applications/simpleBuilder/MoLocator.hpp,
4 +        src/applications/simpleBuilder/simpleBuilder.cpp,
5 +        src/utils/next_combination.hpp, test/utils/Makefile,
6 +        test/utils/NextCombinationTestCase.cpp,
7 +        test/utils/ReplaceWildCardTestCase.cpp,
8 +        test/utils/next_combination.hpp: STL next_permutation like
9 +        next_combination is working
10 +
11 + 2004-10-28 12:22  chrisfen
12 +
13 +        * src/UseTheForce/WATER.cpp: fix of setDipoles
14 +
15 + 2004-10-28 12:20  gezelter
16 +
17 +        * src/UseTheForce/Shapes_FF.cpp: forgot to advance lines in the
18 +        shapeFile
19 +
20 + 2004-10-28 12:20  gezelter
21 +
22 +        * samples/shape/linear.md: forgot the orientation line
23 +
24 + 2004-10-28 11:56  gezelter
25 +
26 +        * src/: UseTheForce/DUFF.cpp, UseTheForce/EAM_FF.cpp,
27 +        UseTheForce/ForceFields.hpp, UseTheForce/LJFF.cpp,
28 +        UseTheForce/WATER.cpp, types/AtomType.cpp: fixed duplicate
29 +        declaration foo
30 +
31 + 2004-10-28 11:55  gezelter
32 +
33 +        * samples/lipid/5x5.md: uncommented .in line
34 +
35 + 2004-10-28 10:42  tim
36 +
37 +        * test/utils/: Makefile, NextCombinationTestCase.cpp,
38 +        NextCombinationTestCase.hpp, next_combination.hpp: next_combination
39 +        in progress
40 +
41 + 2004-10-28 10:15  tim
42 +
43 +        * test/utils/: NextCombinationTestCase.cpp,
44 +        NextCombinationTestCase.hpp: adding next_combination test case
45 +
46 + 2004-10-28 10:02  tim
47 +
48 +        * test/utils/next_combination.hpp: STL Compatible combination
49 +        sequence generator
50 +
51 + 2004-10-28 01:23  tim
52 +
53 +        * test/utils/: GenerateCombination.hpp,
54 +        ReplaceWildCardTestCase.cpp: bug fixed in GenerateCombination.hpp
55 +
56 + 2004-10-28 01:16  tim
57 +
58 +        * test/utils/GenerateCombination.hpp: a STL next_permutaion like
59 +        next_combination function.
60 +
61 + 2004-10-27 22:27  tim
62 +
63 +        * test/utils/ReplaceWildCard.hpp: no message
64 +
65 + 2004-10-27 22:14  tim
66 +
67 +        * test/utils/: ReplaceWildCard.hpp, ReplaceWildCardTestCase.cpp:
68 +        ReplaceWildCard(recursive version) is working, need refactoring. An
69 +        iterative version is on the way
70 +
71 + 2004-10-27 21:28  tim
72 +
73 +        * test/utils/: Makefile, ReplaceWildCard.hpp,
74 +        ReplaceWildCardTestCase.cpp: ReplaceWildCard in progress
75 +
76 + 2004-10-27 21:08  tim
77 +
78 +        * test/utils/: ReplaceWildCardTestCase.cpp,
79 +        ReplaceWildCardTestCase.hpp: Adding Test Case for ReplaceWildCard
80 +
81 + 2004-10-27 18:17  tim
82 +
83 +        * test/utils/ReplaceWildCard.hpp: adding ReplaceWildCard.hpp, need
84 +        test
85 +
86 + 2004-10-27 01:25  tim
87 +
88 +        * src/utils/TupleMatcher.hpp: Adding Generic TupleMatcher, wild
89 +        char matching is on the way
90 +
91 + 2004-10-27 01:07  tim
92 +
93 +        * src/utils/Tuple.hpp: Adding Generic Tuple3 and Tuple4
94 +
95 + 2004-10-26 22:00  gezelter
96 +
97 +        * src/UseTheForce/: EAM_FF.cpp, ForceFields.hpp: bug fix
98 +
99 + 2004-10-26 21:20  gezelter
100 +
101 +        * src/UseTheForce/ForceFields.hpp: subclass foo
102 +
103 + 2004-10-26 21:16  gezelter
104 +
105 +        * src/UseTheForce/: EAM_FF.cpp, LJFF.cpp, WATER.cpp: more char* ->
106 +        string conversion
107 +
108 + 2004-10-26 19:01  gezelter
109 +
110 +        * src/: UseTheForce/DUFF.cpp, UseTheForce/EAM_FF.cpp,
111 +        UseTheForce/ForceFields.hpp, brains/SimSetup.cpp,
112 +        brains/SimSetup.hpp: char* -> string
113 +
114 + 2004-10-26 17:25  gezelter
115 +
116 +        * src/types/: AtomType.cpp, AtomType.hpp, DirectionalAtomType.hpp,
117 +        Makefile, ShapeAtomType.cpp, ShapeAtomType.hpp, ShapeType.cpp,
118 +        ShapeType.hpp: Making ShapeType into a ShapeAtomType, fixing some
119 +        isXXX
120 +
121 + 2004-10-26 17:25  gezelter
122 +
123 +        * src/math/: RealSphericalHarmonic.cpp, RealSphericalHarmonic.hpp:
124 +        define name collision
125 +
126 + 2004-10-26 17:24  gezelter
127 +
128 +        * src/: UseTheForce/DUFF.cpp, UseTheForce/EAM_FF.cpp,
129 +        UseTheForce/ForceFields.hpp, UseTheForce/LJFF.cpp,
130 +        UseTheForce/Makefile, UseTheForce/Shapes_FF.cpp,
131 +        UseTheForce/WATER.cpp, UseTheForce/doForces.F90,
132 +        UseTheForce/DarkSide/shapes_interface.h, brains/SimSetup.cpp:
133 +        forcefield refactoring for shapes
134 +
135 + 2004-10-26 17:24  gezelter
136 +
137 +        * samples/shape/: 5CB.shape, 8CB.shape, C60.shape, C70.shape,
138 +        Shapes.frc, cholesterol.shape, ethylBenzene.shape, linear.in,
139 +        linear.md, linear.shape, toluene.shape: adding sample shape
140 +        directory
141 +
142 + 2004-10-26 17:19  tim
143 +
144 +        * ChangeLog, src/brains/DataStorage.cpp,
145 +        src/brains/DataStorage.hpp, src/brains/Snapshot.hpp,
146 +        test/brains/DataStorageTestCase.cpp,
147 +        test/brains/DataStorageTestCase.hpp, test/brains/Makefile:
148 +        DataStorage passes unit test
149 +
150 + 2004-10-26 13:03  chrisfen
151 +
152 +        * src/UseTheForce/DarkSide/: shapes.F90, shapes_interface.h:
153 +        Changes to help advance shapes
154 +
155 + 2004-10-26 13:02  chrisfen
156 +
157 +        * src/UseTheForce/: ForceFields.hpp, Shapes_FF.cpp: Changes to
158 +        Shapes force field reader
159 +
160 + 2004-10-26 12:28  tim
161 +
162 +        * src/brains/Snapshot.hpp, test/brains/RigidBody.hpp: Snaphot and
163 +        SnapshotTestCase in progress
164 +
165 + 2004-10-25 17:46  tim
166 +
167 +        * ChangeLog, src/math/RectMatrix.hpp, src/math/SquareMatrix.hpp,
168 +        src/math/SquareMatrix3.hpp, src/math/Vector.hpp,
169 +        src/math/Vector3.hpp, test/brains/StuntDouble.hpp,
170 +        test/math/RectMatrixTestCase.cpp, test/math/Vector3TestCase.cpp,
171 +        test/math/VectorTestCase.cpp: add getArray function to  RectMatrix
172 +        and Vector classes
173 +
174 + 2004-10-25 12:03  tim
175 +
176 +        * ChangeLog, src/utils/GenericFactory.hpp,
177 +        test/utils/GenericFactoryTestCase.cpp,
178 +        test/utils/GenericFactoryTestCase.hpp, test/utils/Makefile: adding
179 +        GenericFactory Test Case. GenericFactory now can bed used to creat
180 +        ForcefieldFactory and IntegratorFactory etc.
181 +
182 + 2004-10-24 23:08  tim
183 +
184 +        * src/: brains/SimModel.hpp, brains/SimSnapshotManager.cpp,
185 +        brains/SimSnapshotManager.hpp, brains/Snapshot.hpp,
186 +        brains/SnapshotManager.hpp, utils/GenericFactory.hpp: more classes
187 +        get reconstructed
188 +
189 + 2004-10-24 02:55  tim
190 +
191 +        * src/utils/GenericFactory.hpp: GenericFactory pass unit test
192 +
193 + 2004-10-23 18:09  tim
194 +
195 +        * test/brains/: Atom.hpp, DirectionalAtom.hpp, RigidBody.hpp,
196 +        StuntDouble.cpp, StuntDouble.hpp, Atom.cpp, DirectioanlAtom.cpp,
197 +        RigidBody.cpp: Refactoring in progress
198 +
199 + 2004-10-22 18:09  tim
200 +
201 +        * ChangeLog, src/brains/Snapshot.hpp,
202 +        src/brains/SnapshotManager.hpp, src/math/SquareMatrix.hpp,
203 +        test/brains/SnapshotTestCase.cpp, test/brains/SnapshotTestCase.hpp,
204 +        test/brains/StuntDouble.hpp: more work in Snapshot
205 +
206 + 2004-10-22 17:59  chrisfen
207 +
208 +        * src/: UseTheForce/LJFF.cpp,
209 +        UseTheForce/DarkSide/atype_interface.h, types/AtomType.cpp: Dear
210 +        god!  It runs and conserves energy!
211 +
212 + 2004-10-22 17:54  chrisfen
213 +
214 +        * src/types/: AtomType.cpp, AtomType.hpp: strDUP not strCOPY
215 +
216 + 2004-10-22 17:53  chrisfen
217 +
218 +        * src/: UseTheForce/DUFF.cpp, UseTheForce/EAM_FF.cpp,
219 +        UseTheForce/LJFF.cpp, UseTheForce/Shapes_FF.cpp,
220 +        UseTheForce/WATER.cpp, UseTheForce/doForces.F90,
221 +        brains/SimInfo.cpp, brains/SimInfo.hpp: fixey fixey the breakey
222 +        breakey
223 +
224 + 2004-10-22 17:53  chrisfen
225 +
226 +        * make/Makefile.in: compiler flags
227 +
228 + 2004-10-22 16:20  gezelter
229 +
230 +        * src/: UseTheForce/DUFF.cpp, UseTheForce/EAM_FF.cpp,
231 +        UseTheForce/LJFF.cpp, UseTheForce/doForces.F90,
232 +        brains/fSimulation.h, types/AtomType.hpp,
233 +        types/DirectionalAtomType.hpp: fixey fixey
234 +
235 + 2004-10-22 15:22  gezelter
236 +
237 +        * src/UseTheForce/DarkSide/: LJ.F90, atype.F90, atype_interface.h,
238 +        charge.F90, charge_interface.h, dipole.F90, dipole_interface.h,
239 +        lj_interface.h, shapes.F90, simulation.F90: Added un-busticated
240 +        fortran files and c/Fortran interfaces
241 +
242 + 2004-10-22 15:21  gezelter
243 +
244 +        * src/types/: AtomType.cpp, AtomType.hpp, AtomTypeProperties.h,
245 +        DirectionalAtomType.hpp, Makefile: More on AtomType and
246 +        DirectionalAtomType
247 +
248 + 2004-10-22 09:47  gezelter
249 +
250 +        * src/types/AtomType.hpp: Adding AtomType
251 +
252 + 2004-10-21 16:31  tim
253 +
254 +        * ChangeLog, src/brains/Snapshot.hpp,
255 +        src/brains/SnapshotManager.hpp, src/math/RectMatrix.hpp,
256 +        src/math/SquareMatrix.hpp, src/math/SquareMatrix3.hpp,
257 +        src/math/Vector.hpp, src/math/Vector3.hpp,
258 +        test/math/RectMatrixTestCase.cpp, test/math/VectorTestCase.cpp:
259 +        Snapshot and SnapshotManager in progress
260 +
261 + 2004-10-21 16:30  tim
262 +
263 +        * test/brains/: BrainsTest.cpp, Makefile,
264 +        SnapshotManagerTestCase.cpp, SnapshotManagerTestCase.hpp,
265 +        SnapshotTestCase.cpp, SnapshotTestCase.hpp: adding test case for
266 +        Snapshot and snapshotManager.
267 +
268   2004-10-21 15:15  gezelter
269  
270          * src/: UseTheForce/DUFF.cpp, UseTheForce/EAM_FF.cpp,

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