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Comparing trunk/OOPSE-3.0/ChangeLog (file contents):
Revision 2246 by chrisfen, Sun May 29 21:13:23 2005 UTC vs.
Revision 2309 by chrisfen, Sun Sep 18 20:45:38 2005 UTC

# Line 1 | Line 1
1 + 2005-09-16 18:04  chuckv
2 +
3 +        * src/io/: Globals.cpp, Globals.hpp: Added keywords for compressed
4 +        dump files.
5 +
6 + 2005-09-16 16:07  chrisfen
7 +
8 +        * src/: UseTheForce/doForces_interface.F90,
9 +        UseTheForce/doForces_interface.h, brains/SimInfo.cpp: xlf found a
10 +        bug that ifc missed...
11 +
12 + 2005-09-16 15:36  chrisfen
13 +
14 +        * src/UseTheForce/: doForces.F90, DarkSide/electrostatic.F90:
15 +        fixing some summation method issues
16 +
17 + 2005-09-16 14:35  chrisfen
18 +
19 +        * src/brains/SimInfo.cpp: fixed a capitalization error
20 +
21 + 2005-09-16 14:34  chrisfen
22 +
23 +        * src/UseTheForce/: fElectrostaticSummationMethod.h,
24 +        DarkSide/fElectrostaticSummationMethod.h: moved a header file
25 +        around
26 +
27 + 2005-09-16 14:00  chrisfen
28 +
29 +        * src/: UseTheForce/DarkSide/electrostatic_interface.F90,
30 +        brains/SimInfo.cpp, brains/SimInfo.hpp: it builds now, but there
31 +        are known issues - particularly with reaction field...
32 +
33 + 2005-09-16 11:07  chrisfen
34 +
35 +        * src/: UseTheForce/DarkSide/electrostatic.F90, brains/SimInfo.cpp,
36 +        io/Globals.cpp, io/Globals.hpp: some fixes but even more breaking
37 +        (cutting out the old way to do reaction field)
38 +
39 + 2005-09-15 17:05  gezelter
40 +
41 +        * src/UseTheForce/: doForces.F90, fCoulombicCorrection.h,
42 +        fElectrostaticSummationMethod.h, DarkSide/electrostatic.F90,
43 +        DarkSide/electrostatic_interface.F90,
44 +        DarkSide/electrostatic_interface.h: Working on adding WOLF
45 +
46 + 2005-09-15 14:17  tim
47 +
48 +        * src/io/DumpReader.cpp: Fix a bug in DumpReader in case readFrame
49 +        is called without calling getNFrames
50 +
51 + 2005-09-15 08:47  chrisfen
52 +
53 +        * src/UseTheForce/fCoulombicCorrection.h: forgot to add a header
54 +
55 + 2005-09-14 21:48  chuckv
56 +
57 +        * src/UseTheForce/doForces.F90: Fixed bug where gtypeMaxCutoff was
58 +        not initialized after creation. When maxval(gtypeMaxCutoff) was
59 +        called, the largest random garbage value was returned from the
60 +        array.
61 +
62 + 2005-09-14 19:14  chrisfen
63 +
64 +        * src/: brains/SimInfo.cpp, brains/SimInfo.hpp, io/Globals.cpp,
65 +        io/Globals.hpp: changes to include the coulombicCorrection selector
66 +
67 + 2005-09-14 19:13  chrisfen
68 +
69 +        * src/UseTheForce/DarkSide/: Makefile, electrostatic.F90,
70 +        reactionField.F90: added in the undamped wolf, in the process of
71 +        doing the damped wolf
72 +
73 + 2005-09-14 19:13  chrisfen
74 +
75 +        * src/UseTheForce/: doForces.F90, doForces_interface.F90,
76 +        doForces_interface.h, notifyCutoffs.F90: some changes to activate
77 +        the coulombicCorrection selector
78 +
79 + 2005-09-14 19:11  chrisfen
80 +
81 +        * samples/water/dimer/: cl.in, cl.md, water.md: just some testing
82 +
83 + 2005-09-14 19:11  chrisfen
84 +
85 +        * samples/argon/: 500.in, 500.md: Equilibrated the sample
86 +
87 + 2005-09-14 19:10  chrisfen
88 +
89 +        * forceFields/DUFF2.frc: re-added Cl- and Na+
90 +
91 + 2005-09-14 15:31  chuckv
92 +
93 +        * src/UseTheForce/DarkSide/eam.F90: EAM now uses eamlist to lookup
94 +        eamAtypes instead of assuming a 1-1 correspondence to atypes.
95 +
96 + 2005-09-14 15:28  gezelter
97 +
98 +        * src/UseTheForce/doForces.F90: fix to put back calculation of r in
99 +        do_prepair
100 +
101 + 2005-09-14 14:02  gezelter
102 +
103 +        * src/UseTheForce/DarkSide/LJ.F90: fixed a bug in the
104 +        createMixingMap routine.  It should now set doShift correctly
105 +
106 + 2005-09-07 17:44  chuckv
107 +
108 +        * src/UseTheForce/doForces.F90: Added nGroupsInRow for mpi build.
109 +
110 + 2005-09-07 17:23  chuckv
111 +
112 +        * src/UseTheForce/DarkSide/simParallel.F90: Added access to mpi
113 +        logical variables
114 +
115 + 2005-09-07 17:08  gezelter
116 +
117 +        * src/UseTheForce/doForces.F90: bugfix on the grouptype finding
118 +        algorithm
119 +
120 + 2005-09-07 15:46  gezelter
121 +
122 +        * src/: UseTheForce/doForces.F90,
123 +        UseTheForce/doForces_interface.F90, UseTheForce/notifyCutoffs.F90,
124 +        UseTheForce/notifyCutoffs_interface.F90,
125 +        UseTheForce/notifyCutoffs_interface.h, brains/SimInfo.cpp,
126 +        io/Globals.cpp, io/Globals.hpp: adding c-side interface to change
127 +        cutoff Policy
128 +
129 + 2005-09-07 14:18  gezelter
130 +
131 +        * src/UseTheForce/doForces.F90: Some bug hunting
132 +
133 + 2005-09-07 14:18  gezelter
134 +
135 +        * samples/argon/argonNVT.md: Just a longer test
136 +
137 + 2005-09-06 12:32  chuckv
138 +
139 +        * src/UseTheForce/doForces.F90: Added allocation for gtypeCutoffmap
140 +        etc..
141 +
142 + 2005-09-01 17:56  gezelter
143 +
144 +        * src/UseTheForce/doForces.F90: initialized atomTypeMaxCutoff(i) to
145 +        zero
146 +
147 + 2005-09-01 15:17  gezelter
148 +
149 +        * src/UseTheForce/: doForces.F90, doForces_interface.F90: wrote
150 +        createGtypeCutoffMap
151 +
152 + 2005-08-30 13:23  chrisfen
153 +
154 +        * src/: UseTheForce/doForces.F90,
155 +        UseTheForce/doForces_interface.F90,
156 +        UseTheForce/doForces_interface.h,
157 +        UseTheForce/DarkSide/electrostatic.F90,
158 +        UseTheForce/DarkSide/gb.F90, brains/SimInfo.cpp,
159 +        brains/fSimulation.h, io/Globals.cpp, io/Globals.hpp: made some
160 +        changes for implementing the wolf potential
161 +
162 + 2005-08-26 17:39  chrisfen
163 +
164 +        * src/UseTheForce/DarkSide/eam.F90: updated getEAMCut
165 +
166 + 2005-08-26 16:30  chrisfen
167 +
168 +        * src/UseTheForce/: doForces.F90, DarkSide/eam.F90,
169 +        DarkSide/gb.F90, DarkSide/shapes.F90, DarkSide/sticky.F90: added
170 +        some probably nonfunctional get*cut routines
171 +
172 + 2005-08-26 15:34  chuckv
173 +
174 +        * src/UseTheForce/DarkSide/eam.F90: Added eamType map to atid map.
175 +
176 + 2005-08-26 11:36  gezelter
177 +
178 +        * src/UseTheForce/doForces.F90: fixing some of the problems in the
179 +        interactionHash and gtypeCutoff routines
180 +
181 + 2005-08-17 10:26  gezelter
182 +
183 +        * src/UseTheForce/: doForces.F90, fCutoffPolicy.h,
184 +        DarkSide/simulation.F90: added fCutoffPolicy.h
185 +
186 + 2005-08-11 16:04  gezelter
187 +
188 +        * src/UseTheForce/: doForces.F90, notifyCutoffs.F90: breakage in
189 +        progress
190 +
191 + 2005-08-10 14:17  gezelter
192 +
193 +        * src/primitives/StuntDouble.hpp: putting spaceballs back where
194 +        they belong
195 +
196 + 2005-08-09 17:33  gezelter
197 +
198 +        * src/UseTheForce/DarkSide/LJ.F90: Complete rewrite of Lennard
199 +        Jones module
200 +
201 + 2005-08-09 17:33  gezelter
202 +
203 +        * src/UseTheForce/doForces.F90: Breaky Breaky BREAKY breaky breaky
204 +
205 + 2005-08-09 14:40  chuckv
206 +
207 +        * src/UseTheForce/doForces.F90: In process of re-write for group
208 +        based cutoff....
209 +
210 + 2005-07-29 14:38  gezelter
211 +
212 +        * src/UseTheForce/doForces.F90: fixes in progress
213 +
214 + 2005-07-29 12:34  tim
215 +
216 +        * src/UseTheForce/doForces.F90: fix a bug which does not update
217 +        me_i and me_j correctly
218 +
219 + 2005-07-28 17:12  chuckv
220 +
221 +        * src/UseTheForce/: doForces.F90, notifyCutoffs.F90: Changed
222 +        cutoffs... Segfaults nicely now...
223 +
224 + 2005-07-20 12:04  gezelter
225 +
226 +        * configure, ac-tools/aclocal.m4: fixed ACX_MPI to ignore some text
227 +        error messages from pathscale compiler
228 +
229 + 2005-07-13 11:48  tim
230 +
231 +        * src/applications/staticProps/DensityPlot.cpp: std::bind2nd is in
232 +        <functional>
233 +
234 + 2005-07-13 10:54  tim
235 +
236 +        * src/: UseTheForce/fSwitchingFunction.h,
237 +        UseTheForce/mpiComponentPlan.h,
238 +        UseTheForce/DarkSide/fInteractionMap.h, brains/fSimulation.h,
239 +        io/BASS_interface.h, io/BASS_parse.c, io/BASS_parse.h,
240 +        io/BASSlex.l, io/BASSyacc.y, io/interface.c, io/make_nodes.c,
241 +        io/mpiBASS.c, io/mpiBASS.h, io/node_list.h, io/parse_tree.c,
242 +        io/parse_tree.h, math/MatVec3.c, utils/residentMem.c,
243 +        utils/simError.c, utils/simError.h: replace c++ style comment in c
244 +        files
245 +
246 + 2005-07-03 15:53  chuckv
247 +
248 +        * src/: UseTheForce/doForces.F90, UseTheForce/notifyCutoffs.F90,
249 +        UseTheForce/DarkSide/simulation.F90, utils/oopseMPI.F90: Added
250 +        subroutine to set cuttoff for Interaction map and function in
251 +        simulation.F90 to determine if a particular atype is present in a
252 +        simulation.
253 +
254 + 2005-06-28 08:58  gezelter
255 +
256 +        * src/UseTheForce/doForces.F90: [no log message]
257 +
258 + 2005-06-27 17:21  chuckv
259 +
260 +        * src/UseTheForce/doForces.F90: More breaking and destruction of
261 +        force code. Does not build at this point...
262 +
263 + 2005-06-27 16:01  gezelter
264 +
265 +        * src/: UseTheForce/doForces.F90, UseTheForce/DarkSide/atype.F90,
266 +        UseTheForce/DarkSide/fInteractionMap.h,
267 +        UseTheForce/DarkSide/interactions.F90, utils/definitions.F90:
268 +        Breaky breaky!
269 +
270 + 2005-06-20 11:03  gezelter
271 +
272 +        * samples/water/ssd/ssd.md,
273 +        src/applications/staticProps/DensityPlot.cpp: fixed a bug and ran a
274 +        simulation
275 +
276 + 2005-06-13 13:25  tim
277 +
278 +        * src/: applications/staticProps/DensityPlot.cpp,
279 +        applications/staticProps/DensityPlot.hpp,
280 +        applications/staticProps/SCDOrderParameter.cpp,
281 +        applications/staticProps/StaticProps.cpp,
282 +        io/AtomTypesSectionParser.cpp: working version of DensityPlot
283 +
284 + 2005-05-31 17:31  chuckv
285 +
286 +        * src/: brains/SimInfo.cpp, integrators/Velocitizer.cpp: Changes to
287 +        remove angular momentum.
288 +
289 + 2005-05-31 12:34  chuckv
290 +
291 +        * src/applications/nanoRodBuilder/nanorodBuilder.cpp: Fixed bug in
292 +        typo in nanorodBuilder.
293 +
294 + 2005-05-30 09:01  chuckv
295 +
296 +        * src/: applications/nanoRodBuilder/nanorodBuilder.cpp,
297 +        brains/SimInfo.cpp, brains/SimInfo.hpp, brains/Stats.cpp,
298 +        brains/Stats.hpp, integrators/Velocitizer.cpp,
299 +        integrators/Velocitizer.hpp: Added method to remove system angular
300 +        momentum to velocitizer and added method to calculate system
301 +        angular momentum to siminfo.
302 +
303 + 2005-05-29 16:16  chrisfen
304 +
305 +        * src/UseTheForce/DarkSide/: electrostatic.F90, sticky.F90: Removed
306 +        balance from the Darkside (files)
307 +
308 + 2005-05-29 16:15  chrisfen
309 +
310 +        * src/UseTheForce/doForces.F90: Removed balance from doForces
311 +
312 + 2005-05-29 16:15  chrisfen
313 +
314 +        * samples/water/tap/: tap.in, tap.md: Updated tap sample
315 +
316 + 2005-05-29 16:15  chrisfen
317 +
318 +        * samples/water/dimer/: Makefile, tap.in, tap.md: Included a tap
319 +        dimer for testing purposes
320 +
321 + 2005-05-29 16:14  chrisfen
322 +
323 +        * forceFields/DUFF2.frc: Re-entered the TIP4P-Ew water model. It
324 +        was apparently wiped earlier this month...
325 +
326 + 2005-05-29 16:13  chrisfen
327 +
328 +        * ChangeLog: ran make cvslog
329 +
330   2005-05-28 19:16  tim
331  
332          * src/visitors/: AtomNameVisitor.cpp, AtomNameVisitor.hpp: adding

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