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Comparing trunk/OOPSE-3.0/ChangeLog (file contents):
Revision 1490 by gezelter, Fri Sep 24 04:16:43 2004 UTC vs.
Revision 1625 by tim, Thu Oct 21 16:22:01 2004 UTC

#	Line 1 | Line 1
1	<	2004-07-23 15:31  tim
1	>	2004-10-20 17:54  tim
2
3	<	* samples/lipid/5x5.bass: modify 5x5.bass
3	>	* ChangeLog, src/utils/PropertyMap.cpp, src/utils/PropertyMap.hpp,
4	>	test/utils/GenericDataTestCase.cpp, test/utils/Makefile,
5	>	test/utils/PropertyMapTestCase.cpp,
6	>	test/utils/PropertyMapTestCase.hpp, test/utils/UtilTest:
7	>	GenericData and PropertyMap  pass unit test.
8
9	<	2004-07-23 15:25  tim
9	>	2004-10-20 16:52  gezelter
10
11	<	* samples/water/tip3p_ice/: 200.in, tp3.bass: [no log message]
11	>	* src/UseTheForce/: DUFF.cpp, WATER.cpp, DarkSide/sticky.F90,
12	>	DarkSide/sticky_interface.h: fixed a fortran name problem
13
14	<	2004-07-23 15:18  tim
14	>	2004-10-20 16:38  tim
15
16	<	* samples/: water/ssde/ssde.bass, argon/500.bass,
17	<	argon/argonNVT.bass: [no log message]
16	>	* test/utils/: GenericData.hpp, GenericDataTestCase.cpp,
17	>	GenericDataTestCase.hpp, Makefile, PropertyMapTestCase.hpp,
18	>	UtilTest, UtilTest.cpp: adding generic data test case
19
20	<	2004-07-23 15:12  tim
20	>	2004-10-20 16:16  chuckv
21
22	<	* samples/water/: dimer/two.in, spce/spce.in, ssd/ssd.in,
23	<	ssde/ssde.in, tip3p_ice/tp3.in, tip4p/tp4.in: add init files
22	>	* configure, ac-tools/aclocal.m4,
23	>	src/UseTheForce/DarkSide/Makefile,
24	>	src/UseTheForce/DarkSide/mpiSimulation.F90,
25	>	src/UseTheForce/DarkSide/mpiSimulation_interface.h,
26	>	src/UseTheForce/DarkSide/simParallel.F90,
27	>	src/UseTheForce/DarkSide/simParallel_interface.h,
28	>	src/brains/mpiSimulation.cpp, src/brains/mpiSimulation.hpp:
29	>	Fortran/C++ interface de-obfuscation project appears to be
30	>	complete!  Woo hoo!
31
32	<	2004-07-23 15:10  tim
32	>	2004-10-20 15:47  chuckv
33
34	<	* samples/minimizer/: ssdEM.in, tip4p_two.in: add init file
34	>	* src/UseTheForce/: fortranWrapDefines.hpp, fortranWrappers.cpp,
35	>	fortranWrappers.hpp: Fortran/C++ interface de-obfuscation project
36	>	continues
37
38	<	2004-07-23 15:09  tim
38	>	2004-10-20 15:46  chuckv
39
40	<	* samples/argon/: NVT.bass, argonNVT.bass, argonNVT.in: rename
41	<	NVT.bass to argonNVT.bass
40	>	* src/: UseTheForce/DUFF.cpp, UseTheForce/EAM_FF.cpp,
41	>	UseTheForce/ForceFields.cpp, UseTheForce/ForceFields.hpp,
42	>	UseTheForce/LJFF.cpp, UseTheForce/Makefile, UseTheForce/WATER.cpp,
43	>	UseTheForce/doForces_interface.h,
44	>	UseTheForce/notifyCutoffs_interface.h, UseTheForce/wrappers.F90,
45	>	UseTheForce/DarkSide/atype_interface.h,
46	>	UseTheForce/DarkSide/eam_interface.h,
47	>	UseTheForce/DarkSide/gb_interface.h,
48	>	UseTheForce/DarkSide/mpiSimulation_interface.h,
49	>	UseTheForce/DarkSide/shapes_interface.h,
50	>	UseTheForce/DarkSide/simulation_interface.h,
51	>	UseTheForce/DarkSide/sticky_interface.h, brains/ForceFields.cpp,
52	>	brains/SimInfo.cpp, brains/SimInfo.hpp: Fortran/C++ interface
53	>	de-obfuscation project (It is a very long story)
54
55	<	2004-07-23 15:07  tim
55	>	2004-10-20 13:07  tim
56
57	<	* samples/lipid/5x5.in: add 5x5.in
57	>	* ChangeLog, src/math/SquareMatrix.hpp, src/math/SquareMatrix3.hpp,
58	>	test/math/SquareMatrix3TestCase.cpp,
59	>	test/math/SquareMatrixTestCase.cpp,
60	>	test/math/SquareMatrixTestCase.hpp: Math library pass the unit test
61
62	<	2004-07-23 15:06  tim
62	>	2004-10-20 00:52  tim
63
64	<	* samples/alkane/: butane.in, init_butane.eor: add butane.in
64	>	* src/brains/: Snapshot.hpp, SnapshotManager.hpp: Snapshot and
65	>	SnapshotManager in design phase
66
67	<	2004-07-23 14:57  gezelter
67	>	2004-10-19 23:54  gezelter
68
69	<	* libBASS/Globals.cpp, samples/minimizer/ssdEM.bass,
70	<	samples/minimizer/tip4p_two.bass: changed minimizer keywords
69	>	* src/: brains/SimSetup.cpp, utils/StringUtils.cpp: namespace
70	>	problem prevented linking
71
72	<	2004-07-23 14:34  gezelter
72	>	2004-10-19 23:54  gezelter
73
74	<	* configure, ac-tools/configure.in: fixed typo
74	>	* src/UseTheForce/Shapes_FF.cpp: fixed include
75
76	<	2004-07-23 14:32  gezelter
76	>	2004-10-19 23:26  gezelter
77
78	<	* samples/minimizer/Makefile.in: fixed sample makefile
78	>	* src/utils/: Makefile, definitions.F90, definitions_module.F90,
79	>	oopseMPI.F90, oopseMPI_module.F90, status.F90, status_module.F90:
80	>	more fortran name mangling
81
82	<	2004-07-23 14:31  gezelter
82	>	2004-10-19 23:23  gezelter
83
84	<	* configure, ac-tools/configure.in, samples/minimizer/Makefile.in,
52	<	samples/minimizer/WATER.frc, samples/minimizer/ssdEM.bass,
53	<	samples/minimizer/tip4p_two.bass, samples/minimizer/water.mdl:
54	<	minimizer sample changes
84	>	* src/profiling/timing.F90: yet more fortran renaming
85
86	<	2004-07-23 14:15  gezelter
86	>	2004-10-19 23:19  gezelter
87
88	<	* configure, ac-tools/configure.in: removed beadLipid
88	>	* src/UseTheForce/: Makefile, doForces.F90, doForces_interface.h,
89	>	do_Forces.F90, do_Forces.h, notifyCutoffs.F90,
90	>	notifyCutoffs_interface.h, notifycutoffs_module_interface.h,
91	>	wrappers.F90: Fortran name cleanup continues
92
93	<	2004-07-23 14:08  tim
93	>	2004-10-19 23:12  gezelter
94
95	<	* samples/Makefile.in: remove beadLipid
95	>	* src/UseTheForce/DarkSide/: atype.F90, simulation.F90: fixing some
96	>	broken fortran stuff
97
98	<	2004-07-23 14:03  chuckv
98	>	2004-10-19 23:02  gezelter
99
100	<	* samples/metals/: Au_nanoparticle.eor,
101	<	Au_nanoparticle_coreshell_12-20.bass,
102	<	Au_nanoparticle_coreshell_12-20.in: Added core-shell nanoparticle
103	<	files.
100	>	* src/UseTheForce/DarkSide/: LJ.F90, Makefile, atype.F90,
101	>	atype_interface.h, atype_module.F90, atype_module_interface.h,
102	>	calc_LJ_FF.F90, calc_charge_charge.F90, calc_dipole_dipole.F90,
103	>	calc_eam.F90, calc_gb.F90, calc_reaction_field.F90,
104	>	calc_shapes.F90, calc_sticky_pair.F90, charge.F90, dipole.F90,
105	>	eam.F90, eam_interface.h, eam_module_inteface.h, gb.F90,
106	>	gb_interface.h, gb_module_interface.h, mpiSimulation.F90,
107	>	mpiSimulation_interface.h, mpiSimulation_module.F90,
108	>	mpisimulation_module_interface.h, reactionField.F90, shapes.F90,
109	>	shapes_interface.h, shapes_module.h, simulation.F90,
110	>	simulation_interface.h, simulation_module.F90,
111	>	simulation_module_interface.h, sticky.F90, sticky_interface.h,
112	>	sticky_pair_module_interface.h, switch_module.F90, switcheroo.F90:
113	>	name sanity on the fortran side
114
115	<	2004-07-23 13:51  tim
115	>	2004-10-19 19:18  tim
116
117	<	* samples/water/tip4p/TP4init.in: remove TP4init.in
117	>	* test/math/SquareMatrix3TestCase.hpp: [no log message]
118
119	<	2004-07-23 13:50  tim
119	>	2004-10-19 18:01  tim
120
121	<	* samples/water/tip4p/: Makefile.in, tp4.bass: change init file
122	<	name for tip4p and tip3p_ice
121	>	* src/math/RectMatrix.hpp, src/math/SquareMatrix.hpp,
122	>	src/math/SquareMatrix3.hpp, test/math/SquareMatrix3TestCase.cpp:
123	>	except diagonalize(), all of functions in math library pass the
124	>	test
125
126	<	2004-07-23 13:48  tim
126	>	2004-10-19 17:43  chuckv
127
128	<	* samples/water/ssde/: Makefile.in, SSDEinit.in: [no log message]
128	>	* src/UseTheForce/do_Forces.h: Added correct prototypes for
129	>	C-fortran interface functions.
130
131	<	2004-07-23 13:48  tim
131	>	2004-10-19 17:37  chuckv
132
133	<	* samples/water/ssd/: Makefile.in, init_ssd.eor, ssd.bass: change
134	<	init file name for ssd
133	>	* src/UseTheForce/DarkSide/: atype_module_interface.h,
134	>	eam_module_inteface.h, gb_module_interface.h,
135	>	mpisimulation_module_interface.h, simulation_module_interface.h,
136	>	sticky_pair_module_interface.h: Added correct prototypes for
137	>	C-fortran interface functions.
138
139	<	2004-07-23 13:46  tim
139	>	2004-10-19 16:28  tim
140
141	<	* samples/water/spce/: Makefile.in, SPCEinit.in, spce.bass: remove
142	<	SPCEInit.in
141	>	* ChangeLog, src/math/Quaternion.hpp, src/math/RectMatrix.hpp,
142	>	src/math/SquareMatrix.hpp, src/math/Vector.hpp,
143	>	test/math/QuaternionTestCase.cpp, test/math/QuaternionTestCase.hpp,
144	>	test/math/RectMatrixTestCase.cpp,
145	>	test/math/SquareMatrix3TestCase.cpp, test/math/Vector3TestCase.cpp,
146	>	test/math/Vector3TestCase.hpp, test/math/VectorTestCase.cpp: more
147	>	bugs get fixed at math library
148
149	<	2004-07-23 13:45  tim
149	>	2004-10-19 15:43  chuckv
150
151	<	* samples/water/dimer/: Makefile.in, two.bass, two.init: change
152	<	names for init file
151	>	* src/UseTheForce/: DarkSide/atype_module_interface.h,
152	>	DarkSide/eam_module_inteface.h, DarkSide/gb_module_interface.h,
153	>	DarkSide/mpisimulation_module_interface.h,
154	>	DarkSide/simulation_module_interface.h,
155	>	DarkSide/sticky_pair_module_interface.h, DarkSide/calc_eam.F90,
156	>	DarkSide/atype_module.F90, DarkSide/calc_gb.F90,
157	>	DarkSide/calc_sticky_pair.F90, DarkSide/mpiSimulation_module.F90,
158	>	DarkSide/simulation_module.F90, do_Forces.F90,
159	>	fortranWrapDefines.hpp, mpiComponentPlan.h, notifyCutoffs.F90,
160	>	notifycutoffs_module_interface.h: Added new files for fortran
161	>	interface.
162
163	<	2004-07-23 13:40  tim
163	>	2004-10-19 15:43  gezelter
164
165	<	* samples/lipid/: 5x5.bass, 5x5.eor, Makefile.in, init_5x5.eor:
102	<	change init file name in lipid directory
165	>	* src/UseTheForce/Makefile: regressing
166
167	<	2004-07-23 13:36  tim
167	>	2004-10-19 15:40  gezelter
168
169	<	* samples/argon/init_argon.eor: remove init_argon.eor
169	>	* src/: UseTheForce/DarkSide/calc_shapes.F90,
170	>	UseTheForce/DarkSide/shapes_module.h, utils/StringUtils.cpp:
171	>	working on shapes for portability
172
173	<	2004-07-23 13:34  tim
173	>	2004-10-19 15:40  gezelter
174
175	<	* samples/: alkane/Makefile.in, alkane/butane.bass,
111	<	alkane/butane.eor, argon/500.eor, argon/ar864.eor: [no log message]
175	>	* src/UseTheForce/: Makefile, Shapes_FF.cpp: working on shapes
176
177	<	2004-07-23 13:33  tim
177	>	2004-10-19 13:21  chrisfen
178
179	<	* samples/argon/Makefile.in: remove eor file
179	>	* src/utils/: StringUtils.cpp, StringUtils.hpp: changed around
180	>	findBegin
181
182	<	2004-07-23 13:31  tim
182	>	2004-10-18 23:34  tim
183
184	<	* samples/argon/: Makefile.in, argon.bass, argon.eor, argonEM.bass:
185	<	change names for argon
184	>	* src/math/Vector.hpp, test/math/RectMatrixTestCase.cpp: more bugs
185	>	are fixed in Vector class
186
187	<	2004-07-23 11:47  tim
187	>	2004-10-18 23:28  tim
188
189	<	* samples/water/ssde/SSDEinit.in: [no log message]
189	>	* test/math/: RectMatrixTestCase.cpp, RectMatrixTestCase.hpp: fix
190	>	some bugs in RectMatrixTestCase
191
192	<	2004-07-23 11:45  tim
192	>	2004-10-18 23:21  tim
193
194	<	* samples/water/ssde/SSDEinit.in: add init file for ssde
194	>	* src/math/Vector.hpp, test/math/RectMatrixTestCase.cpp,
195	>	test/math/RectMatrixTestCase.hpp, test/math/Vector3TestCase.cpp,
196	>	test/math/Vector3TestCase.hpp, test/math/VectorTestCase.cpp,
197	>	test/math/VectorTestCase.hpp: implement more test cases
198
199	<	2004-07-23 11:43  chuckv
199	>	2004-10-18 18:13  tim
200
201	<	* libmdtools/calc_eam.F90: Fixed bug in calc_eam with mixtures and
202	<	cutoffs associated with mixture.
201	>	* ChangeLog, make/Doxyfile, src/math/Matrix3x3d.hpp,
202	>	src/math/RectMatrix.hpp, src/math/SquareMatrix.hpp,
203	>	src/math/SquareMatrix3.hpp, src/math/Vector.hpp,
204	>	src/utils/StringTokenizer.hpp, test/math/Makefile,
205	>	test/math/VectorTestCase.cpp, test/math/VectorTestCase.hpp: more
206	>	tests on math library
207
208	<	2004-07-23 10:35  tim
208	>	2004-10-18 16:03  tim
209
210	<	* libmdtools/: AtomVisitor.cpp, AtomVisitor.hpp: support SSD_E
211	<	SSD_RF SSD1
210	>	* test/math/: Makefile, QuaternionTestCase.cpp,
211	>	QuaternionTestCase.hpp, RectMatrixTestCase.cpp,
212	>	SquareMatrix3TestCase.cpp, Vector3TestCase.cpp,
213	>	Vector3TestCase.hpp, VectorTestCase.cpp, VectorTestCase.hpp: adding
214	>	more testing units
215
216	<	2004-07-23 09:53  tim
216	>	2004-10-18 12:07  tim
217
218	<	* libmdtools/AtomVisitor.cpp: SSDVisitor support SSD_RF, SSD_E,
219	<	SSD1 now
218	>	* src/: brains/SimSetup.hpp, io/FileReader.hpp, math/Euler3.cpp,
219	>	math/Euler3.hpp, math/Quaternion.hpp, math/SquareMatrix3.hpp,
220	>	math/Vector3.hpp, types/ShapeType.cpp, types/ShapeType.hpp,
221	>	utils/GenericFactory.hpp: fix some bugs in Quaternion class
222
223	<	2004-07-23 09:19  tim
146	<
147	<	* libmdtools/ZConsReader.cpp: remove ^M from ZConsReader.cpp
223	>	2004-10-18 11:30  gezelter
224
225	<	2004-07-23 09:18  tim
225	>	* src/math/: RealSphericalHarmonic.cpp, RealSphericalHarmonic.hpp:
226	>	Your basic run of the mill real-valued versions of Y_l^m(\theta,
227	>	\phi)
228
229	<	* samples/lipid/5x5.bass: remove unsupport keyword
229	>	2004-10-18 11:29  gezelter
230
231	<	2004-07-22 16:01  chuckv
231	>	* src/: math/Makefile, math/Matrix3x3d.hpp, math/Vector3.hpp,
232	>	types/Makefile, types/ShapeType.cpp, types/ShapeType.hpp,
233	>	utils/StringUtils.cpp, utils/StringUtils.hpp: Working on getting
234	>	Shapes into OOPSE
235
236	<	* samples/metals/: init_Au_bulk.in, init_Au_nanoparticle.in:
156	<	Changed init files to be more OOPSE like...
236	>	2004-10-18 10:21  gezelter
237
238	<	2004-07-22 10:11  gezelter
238	>	* src/types/: ShapeType.cpp, ShapeType.hpp: Added ShapeType
239
240	<	* configure, ac-tools/configure.in: added sample directory
240	>	2004-10-18 00:23  tim
241
242	<	2004-07-22 10:06  chrisfen
242	>	* test/math/VectorTestCase.hpp: adding  vector test case
243
244	<	* src/Makefile.in: fixed icc7 incompatibility in linking
244	>	2004-10-18 00:23  tim
245
246	<	2004-07-21 17:03  chrisfen
246	>	* src/utils/GenericFactory.hpp: adding generic factory and vector
247	>	test case
248
249	<	* samples/water/: Makefile.in, tip3p_ice/200.in,
169	<	tip3p_ice/Makefile.in, tip3p_ice/tp3.bass, tip3p_ice/water.mdl:
170	<	Added tip3p_ice to Makefile
249	>	2004-10-16 20:19  tim
250
251	<	2004-07-21 16:46  chuckv
251	>	* src/math/: Quaternion.hpp, RectMatrix.hpp, SquareMatrix.hpp,
252	>	SquareMatrix3.hpp, Vector.hpp, Vector3.hpp: math library in
253	>	progress
254
255	<	* samples/metals/: Au.bass, Au.eor, Au_bulk_FBD.bass,
175	<	Au_bulk_voter.bass, Au_nanoparticle.bass, Au_nanoparticle.eor,
176	<	init_Au_bulk.in, init_Au_nanoparticle.in, init_au.in: Added sample
177	<	files for bulk metals and a bass file for both voter and FBD
178	<	formulations of EAM.
255	>	2004-10-15 20:31  tim
256
257	<	2004-07-21 14:53  gezelter
257	>	* src/math/Quaternion.hpp: add quaternion class
258
259	<	* samples/water/dimer/two.bass: Checked a bug where eor file wasn't
183	<	being written at the end of the run
259	>	2004-10-15 16:11  tim
260
261	<	2004-07-21 14:53  gezelter
261	>	* test/io/: DUFF.frc, IfstrstreamTestCase.cpp,
262	>	IfstrstreamTestCase.hpp: adding test file
263
264	<	* libmdtools/Integrator.cpp: Fixed a bug where eor file wasn't
188	<	being written at the end of the run
264	>	2004-10-15 16:10  tim
265
266	<	2004-07-21 09:11  gezelter
266	>	* src/io/basic_ifstrstream.hpp: fix a bunch of bugs
267
268	<	* README: [no log message]
268	>	2004-10-15 15:42  tim
269
270	<	2004-07-21 09:08  gezelter
270	>	* src/io/basic_ifstrstream.hpp: change const_cast to statc_const
271
272	<	* samples/argon/machines: cleaning up for export
272	>	2004-10-15 15:35  tim
273
274	<	2004-07-21 09:04  gezelter
274	>	* src/io/basic_ifstrstream.hpp: fix a bug in basic_ifstrstream.hpp
275
276	<	* NEWS, README: cleaning up for export
276	>	2004-10-15 15:34  tim
277
278	<	2004-07-21 08:45  gezelter
278	>	* test/io/: IfstrstreamTestCase.cpp, Makefile: forget to use
279	>	namespace oopse
280
281	<	* configure, ac-tools/configure.in: removing staticProps from cvs
205	<	tree
281	>	2004-10-15 14:38  chuckv
282
283	<	2004-07-20 12:07  gezelter
283	>	* configure, ac-tools/aclocal.m4: Changed optimization flags for
284	>	XLF and XLC.
285
286	<	* configure, ac-tools/aclocal.m4, utils/Makefile.in,
210	<	utils/quickLate.c, utils/sysbuilder/Makefile.in: [no log message]
286	>	2004-10-15 13:28  tim
287
288	<	2004-07-20 10:17  gezelter
288	>	* test/io/: IfstrstreamTestCase.cpp, IfstrstreamTestCase.hpp:
289	>	adding ifstrstream test case
290
291	<	* configure, ac-tools/aclocal.m4, ac-tools/configure.in,
215	<	third-party/gnugetopt.h, utils/getopt.c, utils/getopt1.c,
216	<	utils/gnugetopt.h: fixing getopt_long
291	>	2004-10-15 13:20  tim
292
293	<	2004-07-19 16:58  gezelter
293	>	* src/io/basic_ifstrstream.hpp: fix include
294
295	<	* configure, ac-tools/configure.in, libmdtools/ReadWrite.hpp,
221	<	libmdtools/ZConsWriter.hpp, src/Makefile.in,
222	<	third-party/gnugetopt.h, utils/Dump2XYZCmd.c, utils/Make.dep,
223	<	utils/Makefile.in, utils/sysbuilder/Makefile.in,
224	<	utils/sysbuilder/latticeBuilder.cpp: [no log message]
295	>	2004-10-15 13:18  tim
296
297	<	2004-07-19 16:52  tim
297	>	* src/math/SquareMatrix.hpp: fix incompatible declaration in jacobi
298
299	<	* utils/quickLate.c: minor fix of format string in quicklate.c
299	>	2004-10-15 13:17  tim
300
301	<	2004-07-19 16:30  tim
301	>	* test/math/: Makefile, RectMatrixTestCase.cpp: adding Makefile
302
303	<	* utils/zsub: remove zsub from cvs tree
303	>	2004-10-15 13:16  tim
304
305	<	2004-07-19 16:25  tim
305	>	* test/io/: Makefile, ifstrstreamTestCase.cpp,
306	>	ifstrstreamTestCase.hpp: adding test case for ifstrstream
307
308	<	* libmdtools/ZConstraint.cpp, utils/Dump2XYZ.cpp: remove some
237	<	comment lines
308	>	2004-10-15 10:37  tim
309
310	<	2004-07-19 16:00  tim
310	>	* test/io/: IOTest.cpp, ifstrstreamTestCase.cpp,
311	>	ifstrstreamTestCase.hpp: add ifstrstreamTestCase
312
313	<	* libmdtools/OOPSEMinimizer.hpp: remove an extra semicolon from
242	<	OOPSEMinimizer.hpp
313	>	2004-10-15 10:20  tim
314
315	<	2004-07-19 13:55  gezelter
315	>	* src/io/basic_ifstrstream.hpp: add checkFilename Option
316
317	<	* libBASS/y.tab.h: Shouldn't have been in CVS
317	>	2004-10-15 10:19  tim
318
319	<	2004-07-19 13:54  gezelter
319	>	* test/math/: RectMatrixTestCase.cpp, RectMatrixTestCase.hpp,
320	>	SquareMatrixTestCase.cpp, SquareMatrixTestCase.hpp: add
321	>	SquareMatrixTestCase class
322
323	<	* libBASS/y.tab.h, libmdtools/ForceFields.cpp: Fix for
251	<	thermodynamic integration of rigid bodies
323	>	2004-10-15 02:52  tim
324
325	<	2004-07-19 12:00  gezelter
325	>	* src/io/basic_ifstrstream.hpp: adding basic_ifstrstream
326
327	<	* libBASS/: BASSlex.c, BASSyacc.c, BASSyacc.h: These can be
256	<	generated via lex and yacc at compile time
327	>	2004-10-14 18:28  tim
328
329	<	2004-07-19 11:47  gezelter
329	>	* src/math/: RectMatrix.hpp, SquareMatrix.hpp, SquareMatrix3.hpp,
330	>	Vector.hpp: math library in progress
331
332	<	* libBASS/BASSlex.c, libBASS/BASSyacc.c, libBASS/BASSyacc.h,
261	<	libBASS/make_nodes.c, libBASS/y.tab.h, libmdtools/Makefile.in,
262	<	libmdtools/MatVec3.c, src/Makefile.in: [no log message]
332	>	2004-10-14 18:27  tim
333
334	<	2004-07-19 11:32  gezelter
334	>	* src/io/FileReader.hpp: FileReader in progress
335
336	<	* configure, ac-tools/aclocal.m4, ac-tools/configure.in,
267	<	third-party/gnugetopt.h, utils/Makefile.in,
268	<	utils/sysbuilder/Makefile.in: changes for gnu getopt and fixed
269	<	SPRNG configure script
336	>	2004-10-13 18:53  tim
337
338	<	2004-07-16 16:49  gezelter
338	>	* src/math/: RectMatrix.hpp, SquareMatrix.hpp: Matrix in progress,
339	>	test in isOrthogonal of SquareMatrix is failed by some reasons
340
341	<	* libBASS/: BASSlex.c, BASSyacc.c, BASSyacc.h: fixing for machines
274	<	that don't have lex and yacc
341	>	2004-10-13 17:28  tim
342
343	<	2004-07-16 15:55  gezelter
343	>	* src/utils/: PropertyMap.cpp, PropertyMap.hpp: adding PropertyMap
344	>	class
345
346	<	* Makefile: Makefiles don't belong in cvs repository
346	>	2004-10-13 17:27  tim
347
348	<	2004-07-16 15:54  gezelter
348	>	* test/math/: MainTest.cpp, RectMatrixTestCase.cpp,
349	>	RectMatrixTestCase.hpp: adding testing unit
350
351	<	* Makefile, forceFields/Makefile, libBASS/Makefile,
283	<	libmdtools/Makefile, samples/Makefile, src/Makefile,
284	<	third-party/Makefile, utils/Makefile, utils/sysbuilder/Makefile:
285	<	Makefiles don't belong in repository
351	>	2004-10-13 17:24  tim
352
353	<	2004-07-16 15:49  gezelter
353	>	* src/math/: RectMatrix.hpp, Vector.hpp: adding RectMatrix
354
355	+	2004-10-13 01:51  tim
356	+
357	+	* src/math/: SquareMatrix.hpp, SquareMatrix3.hpp, Vector.hpp,
358	+	Vector3.hpp: refactory vector and matrix classes
359	+
360	+	2004-10-13 01:50  tim
361	+
362	+	* src/math/Vector3d.hpp: Remove some Makefile.in
363	+
364	+	2004-10-12 18:57  tim
365	+
366	+	* src/math/: Matrix3x3d.hpp, Vector3d.hpp: add Vector3d.hpp and
367	+	Matrix3x3d.hpp
368	+
369	+	2004-10-12 14:08  tim
370	+
371	+	* doc/: cppstyle.html, style.css: adding c++ coding style
372	+
373	+	2004-10-11 17:15  tim
374	+
375	+	* src/: constraints/AbstractClasses.hpp,
376	+	integrators/AbstractClasses.hpp, primitives/AbstractClasses.hpp:
377	+	change #include "mpi.h" to #include <mpi.h> in AbstractClasses.hpp
378	+
379	+	2004-10-11 16:54  tim
380	+
381	+	* scripts/filepp: fix a bug in filepp
382	+
383	+	2004-10-11 16:13  tim
384	+
385	+	* make/Makefile.in: using filepp to generate dependencies instead
386	+	of compilers
387	+
388	+	2004-10-11 16:10  tim
389	+
390	+	* scripts/filepp: filepp can be used to generate dependencies for
391	+	c/c++ now
392	+
393	+	2004-10-11 13:40  tim
394	+
395	+	* make/Makefile.in: remove -module from F90Options
396	+
397	+	2004-10-11 13:01  tim
398	+
399	+	* make/Makefile.in: adding rules to move fortran 90 module to
400	+	target directory
401	+
402	+	2004-10-11 10:43  gezelter
403	+
404	+	* make/Makefile.in: fixed makefile.in
405	+
406	+	2004-10-11 09:51  tim
407	+
408	+	* scripts/filepp: remove "use bytes" which causes problem in sgi
409	+	machine
410	+
411	+	2004-10-11 09:26  tim
412	+
413	+	* forceFields/Makefile: add Makefile
414	+
415	+	2004-10-11 09:23  tim
416	+
417	+	* samples/: water/dimer/Makefile, water/spce/Makefile,
418	+	water/ssd/Makefile, water/ssde/Makefile, water/tip3p_ice/Makefile,
419	+	water/tip4p/Makefile, zcons/Makefile: fix Makefile under water
420	+	directory
421	+
422	+	2004-10-11 09:23  tim
423	+
424	+	* samples/argon/Makefile: remove argon.dump and argon.eor from
425	+	Makefile
426	+
427	+	2004-10-09 01:01  tim
428	+
429	+	* samples/: alkane/Makefile.in, argon/Makefile.in,
430	+	lipid/Makefile.in, metals/Makefile.in, minimizer/Makefile.in:
431	+	Remove some Makefile.in
432	+
433	+	2004-10-08 18:15  tim
434	+
435	+	* make/Makefile.in: [no log message]
436	+
437	+	2004-10-08 17:51  tim
438	+
439	+	* make/Makefile.in: fix make install
440	+
441	+	2004-10-08 17:10  tim
442	+
443	+	* make/Makefile.in: adding make install
444	+
445	+	2004-10-08 17:04  tim
446	+
447		* samples/: alkane/Makefile, argon/Makefile, lipid/Makefile,
448	<	metals/Makefile: Makefiles don't belong in repository
448	>	metals/Makefile, minimizer/Makefile, water/Makefile.in,
449	>	water/dimer/Makefile, water/dimer/Makefile.in, water/spce/Makefile,
450	>	water/spce/Makefile.in, water/ssd/Makefile, water/ssd/Makefile.in,
451	>	water/ssde/Makefile, water/ssde/Makefile.in,
452	>	water/tip3p_ice/Makefile, water/tip3p_ice/Makefile.in,
453	>	water/tip4p/Makefile, water/tip4p/Makefile.in, zcons/Makefile,
454	>	zcons/Makefile.in: add Makefile to sample directory
455
456	<	2004-07-16 15:20  chrisfen
456	>	2004-10-06 18:03  gezelter
457
458	<	* Makefile, configure, ac-tools/configure.in, forceFields/Makefile,
459	<	libBASS/Makefile, libmdtools/Makefile, samples/alkane/Makefile,
296	<	samples/argon/Makefile, samples/lipid/Makefile,
297	<	samples/metals/Makefile, src/Makefile, utils/Makefile,
298	<	utils/sysbuilder/Makefile: Updated configure for new samples
458	>	* src/utils/: getopt.c, getopt1.c, gnugetopt.h: moved the getopt
459	>	stuff
460
461	<	2004-07-16 14:57  chrisfen
461	>	2004-10-06 18:03  gezelter
462
463	<	* samples/water/tip4p/Makefile.in: tip4p makefile.in added
463	>	* configure, ac-tools/aclocal.m4, ac-tools/configure.in,
464	>	make/Doxyfile, src/applications/getopt.c,
465	>	src/applications/getopt1.c, src/applications/gnugetopt.h: more
466	>	build fixes
467
468	<	2004-07-16 14:57  chrisfen
468	>	2004-10-06 17:20  tim
469
470	<	* samples/water/ssde/: 256init.in, Makefile.in, ssde.bass: ssde
307	<	makefile.in added
470	>	* make/: Doxyfile, Makefile.in: adding doxygen configuration file
471
472	<	2004-07-16 14:57  chrisfen
472	>	2004-10-06 17:19  tim
473
474	<	* samples/water/ssd/: Makefile.in, init_ssd.eor, ssd.bass,
475	<	water.mdl: ssd files sorted added
474	>	* scripts/filepp: filepp can handle different fortran module case
475	>	and suffix
476
477	<	2004-07-16 14:57  chrisfen
477	>	2004-10-06 16:27  gezelter
478
479	<	* samples/water/spce/Makefile.in: spce makefile.in added
479	>	* src/restraints/Restraints.cpp: Chris doesn't know about the
480	>	OOPSE-2.0 directory structure yet
481
482	<	2004-07-16 14:56  chrisfen
482	>	2004-10-06 16:27  gezelter
483
484	<	* samples/water/dimer/: Makefile.in, two.bass, two.init, water.mdl:
321	<	dimer files added
484	>	* ChangeLog: Yeah yeah, we'lll get around to it later
485
486	<	2004-07-16 14:56  chrisfen
486	>	2004-10-06 16:22  gezelter
487
488	<	* samples/water/: 200.in, Makefile, Makefile.in, init_ssd.eor,
489	<	spce.bass, spce.eor, ssd.bass, ssd.eor, tim.bass, tim.eor,
327	<	tim.init, tim.xyz, tip3p.bass, tip3p.eor, tip3p.init, two.bass,
328	<	two.eor, two.init, two.xyz, water.mdl: Cleaned up this file
329	<	considerably
488	>	* configure, ac-tools/configure.in, ac-tools/fortran90.m4,
489	>	make/Makefile.in: cleaning up build process
490
491	<	2004-07-16 13:57  gezelter
491	>	2004-10-06 15:01  chrisfen
492
493	<	* AUTHORS, ChangeLog, LICENSE, Makefile, Makefile.in, NEWS, README,
494	<	configure, ac-tools/Make.conf.in, ac-tools/aclocal.m4,
495	<	ac-tools/config.guess, ac-tools/config.sub, ac-tools/configure.in,
496	<	ac-tools/fortran90.m4, ac-tools/install-sh, ac-tools/shtool,
497	<	forceFields/Ag.VC.funcfl, forceFields/Ag.u3.funcfl,
498	<	forceFields/Ag.u6.funcfl, forceFields/Al.VC.funcfl,
499	<	forceFields/Au.VC.funcfl, forceFields/Au.u3.funcfl,
493	>	* src/restraints/Restraints.cpp: made the file reading in
494	>	restraints more intelligent - no longer gives uninformative seg
495	>	faults
496	>
497	>	2004-10-06 14:55  gezelter
498	>
499	>	* src/applications/simpleBuilder/Make.ftemp.old: cleaning up
500	>
501	>	2004-10-06 14:51  gezelter
502	>
503	>	* LICENSE, MPIobj/dummy, make/Makefile, obj/dummy,
504	>	scripts/cleanSrc, src/brains/Makedepend: Cleaning up a bit
505	>
506	>	2004-10-06 13:53  tim
507	>
508	>	* make/: Makefile, Makefile.in: fix make statistics
509	>
510	>	2004-10-06 13:18  tim
511	>
512	>	* make/: Makefile, Makefile.in: adding GNU make functions to
513	>	combine all of the static libraries to a big library
514	>
515	>	2004-10-05 17:57  tim
516	>
517	>	* make/: Makefile, Makefile.in:  adding shared library flag
518	>
519	>	2004-10-05 14:37  tim
520	>
521	>	* src/: Makefile, UseTheForce/Makefile,
522	>	UseTheForce/mpiSimulation_module.F90,
523	>	UseTheForce/DarkSide/Makefile,
524	>	UseTheForce/DarkSide/mpiSimulation_module.F90, math/Makefile: move
525	>	mpiSimulation_module to DarkSide
526	>
527	>	2004-10-05 14:35  tim
528	>
529	>	* make/: Makefile, Makefile.in: building MPI version;using static
530	>	library instead of shared library
531	>
532	>	2004-10-05 09:14  tim
533	>
534	>	* make/: Makefile, Makefile.in: pass __FORTRAN90 instead of __F90
535	>	to filepp
536	>
537	>	2004-10-04 15:56  tim
538	>
539	>	* make/: Makefile, Makefile.in: add make cvslog
540	>
541	>	2004-10-04 11:24  gezelter
542	>
543	>	* make/: Makefile, Makefile.in: more work on the parallel build
544	>
545	>	2004-10-04 11:06  gezelter
546	>
547	>	* make/: Makefile, Makefile.in: changes to backport declare flags
548	>
549	>	2004-10-04 10:27  gezelter
550	>
551	>	* src/UseTheForce/: ForceFields.hpp, Shapes_FF.cpp,
552	>	DarkSide/Makefile, DarkSide/calc_shapes.F90: Started work merging
553	>	shapes
554	>
555	>	2004-10-01 23:40  tim
556	>
557	>	* scripts/: filepp, sfmakedepend: remove sfmakedepend from cvs tree
558	>
559	>	2004-10-01 23:22  tim
560	>
561	>	* make/: Makefile, Makefile.in: add oopse_ as library prefix
562	>
563	>	2004-10-01 16:59  tim
564	>
565	>	* make/: Makefile, Makefile.in: fix a space trimming bug in filepp
566	>
567	>	2004-10-01 16:22  gezelter
568	>
569	>	* Makefile, ac-tools/aclocal.m4, make/Makefile, make/Makefile.in: A
570	>	few minor build changes
571	>
572	>	2004-10-01 16:11  tim
573	>
574	>	* scripts/filepp: adding fortran90 make dependency tool
575	>
576	>	2004-09-30 10:41  tim
577	>
578	>	* make/: Makefile, Makefile.in: make clean is smart enough to only
579	>	remove object files belong to current package.  turn off silent
580	>	mode
581	>
582	>	2004-09-29 16:55  tim
583	>
584	>	* src/: Makefile, UseTheForce/Makefile,
585	>	UseTheForce/DarkSide/Makefile, applications/dump2Xyz/Makefile,
586	>	applications/oopse/Makefile, applications/simpleBuilder/Makefile,
587	>	brains/Makedepend, brains/Makefile, constraints/Makefile,
588	>	integrators/Makefile, io/Makefile, math/Makefile,
589	>	minimizers/Makefile, primitives/Makefile, profiling/Makefile,
590	>	restraints/Makefile, types/Makefile, utils/Makefile,
591	>	visitors/Makefile: define DEV_ROOT as relative path
592	>
593	>	2004-09-29 16:54  tim
594	>
595	>	* make/: Makefile, Makefile.in: get the relative path by shell
596	>	script
597	>
598	>	2004-09-29 16:32  tim
599	>
600	>	* make/Makefile: eliminate DEV_ROOT by relative path
601	>
602	>	2004-09-29 13:37  tim
603	>
604	>	* make/Makefile.in: add PackageLibs;  fix dependency rule
605	>
606	>	2004-09-29 12:57  gezelter
607	>
608	>	* configure, ac-tools/configure.in: updates
609	>
610	>	2004-09-29 12:56  gezelter
611	>
612	>	* make/: Make.conf.in, Makefile.in: Working on make stuff
613	>
614	>	2004-09-29 12:46  tim
615	>
616	>	* Makefile: If makefile does not exist, print error message
617	>
618	>	2004-09-29 12:12  tim
619	>
620	>	* make/: Make.conf.in, Makefile: fix dependencies rule
621	>
622	>	2004-09-29 10:58  gezelter
623	>
624	>	* Makefile, make/Makefile: still working on build process
625	>
626	>	2004-09-29 10:00  tim
627	>
628	>	* make/Makefile: add print statment to rules
629	>
630	>	2004-09-29 09:59  tim
631	>
632	>	* src/: UseTheForce/Makefile, UseTheForce/DarkSide/Makefile,
633	>	applications/dump2Xyz/Makefile, applications/oopse/Makefile,
634	>	applications/simpleBuilder/Makefile, brains/Makefile,
635	>	constraints/Makefile, integrators/Makefile, io/Makefile,
636	>	math/Makefile, minimizers/Makefile, primitives/Makefile,
637	>	profiling/Makefile, restraints/Makefile, types/Makefile,
638	>	utils/Makefile, visitors/Makefile: change Makefile to relative path
639	>
640	>	2004-09-28 21:55  tim
641	>
642	>	* src/utils/: StringUtils.c, StringUtils.h: remove StringUtils.c
643	>	which cause headache in bulding libutils
644	>
645	>	2004-09-28 18:24  tim
646	>
647	>	* src/applications/: BaseLattice.cpp, BaseLattice.hpp,
648	>	Dump2XYZ.cpp, Dump2XYZ.ggo, Dump2XYZCmd.c, Dump2XYZCmd.h,
649	>	Lattice.cpp, Lattice.hpp, LatticeCreator.cpp, LatticeCreator.hpp,
650	>	LatticeFactory.cpp, LatticeFactory.hpp, MoLocator.cpp,
651	>	MoLocator.hpp, Vector3d.hpp, cmdline.c, cmdline.h, nanoBuilder.cpp,
652	>	nanoBuilder.hpp, oopse.cpp, simpleBuilder.cpp, simpleBuilder.ggo,
653	>	simpleBuilderCmd.c, simpleBuilderCmd.h, dump2Xyz/Dump2XYZ.cpp,
654	>	dump2Xyz/Dump2XYZ.ggo, dump2Xyz/Dump2XYZCmd.c,
655	>	dump2Xyz/Dump2XYZCmd.h, dump2Xyz/Makefile, oopse/Makefile,
656	>	oopse/oopse.cpp, simpleBuilder/BaseLattice.cpp,
657	>	simpleBuilder/BaseLattice.hpp, simpleBuilder/Lattice.cpp,
658	>	simpleBuilder/Lattice.hpp, simpleBuilder/LatticeCreator.cpp,
659	>	simpleBuilder/LatticeCreator.hpp, simpleBuilder/LatticeFactory.cpp,
660	>	simpleBuilder/LatticeFactory.hpp, simpleBuilder/Make.ftemp.old,
661	>	simpleBuilder/Makefile, simpleBuilder/MoLocator.cpp,
662	>	simpleBuilder/MoLocator.hpp, simpleBuilder/Vector3d.hpp,
663	>	simpleBuilder/simpleBuilder.cpp, simpleBuilder/simpleBuilder.ggo,
664	>	simpleBuilder/simpleBuilderCmd.c, simpleBuilder/simpleBuilderCmd.h:
665	>	change directory structure of application. Every executable file is
666	>	replaced in seperate directory
667	>
668	>	2004-09-28 17:15  gezelter
669	>
670	>	* lib/dummy: Keep that lib around, please.
671	>
672	>	2004-09-28 17:14  gezelter
673	>
674	>	* Makefile, configure, ac-tools/configure.in, make/Make.conf.in:
675	>	starting a configure version
676	>
677	>	2004-09-28 16:08  tim
678	>
679	>	* src/: UseTheForce/Makefile, UseTheForce/notifyCutoffs.F90,
680	>	UseTheForce/DarkSide/Makefile,
681	>	UseTheForce/DarkSide/notifyCutoffs.F90,
682	>	UseTheForce/DarkSide/simulation_module.F90, brains/Makedepend,
683	>	brains/Makefile, brains/simulation_module.F90: move fortran files
684	>	around to solve dependency problem
685	>
686	>	2004-09-28 15:43  tim
687	>
688	>	* Makefile, src/UseTheForce/ForceFields.hpp,
689	>	src/UseTheForce/Makefile, src/applications/BaseLattice.hpp,
690	>	src/applications/Makedepend, src/applications/Makefile,
691	>	src/brains/Makedepend, src/brains/simulation_module.F90,
692	>	src/integrators/AllIntegrator.hpp, src/math/Euler3.cpp,
693	>	src/math/Makefile, src/minimizers/OOPSEMinimizer.cpp,
694	>	src/utils/Makefile: [no log message]
695	>
696	>	2004-09-28 15:41  tim
697	>
698	>	* make/Makefile, scripts/sfmakedepend: fix fortran dependency
699	>	problem
700	>
701	>	2004-09-28 11:13  tim
702	>
703	>	* make/Makefile, src/io/BASSlex.l, src/io/BASSyacc.y,
704	>	src/io/Makefile: add yacc and lex rules
705	>
706	>	2004-09-27 15:24  tim
707	>
708	>	* make/Makefile: adding include path to F90Options
709	>
710	>	2004-09-27 15:13  tim
711	>
712	>	* make/Makefile: change suffix from .cc to .cpp
713	>
714	>	2004-09-24 11:27  tim
715	>
716	>	* src/: UseTheForce/DUFF.cpp, UseTheForce/EAM_FF.cpp,
717	>	UseTheForce/ForceFields.cpp, UseTheForce/ForceFields.hpp,
718	>	UseTheForce/LJFF.cpp, UseTheForce/WATER.cpp,
719	>	UseTheForce/do_Forces.F90, UseTheForce/fortranWrapDefines.hpp,
720	>	UseTheForce/fortranWrappers.cpp, UseTheForce/fortranWrappers.hpp,
721	>	UseTheForce/mpiForceField.c, UseTheForce/mpiSimulation_module.F90,
722	>	UseTheForce/DarkSide/calc_LJ_FF.F90,
723	>	UseTheForce/DarkSide/notifyCutoffs.F90,
724	>	UseTheForce/DarkSide/switch_module.F90,
725	>	applications/BaseLattice.cpp, applications/Dump2XYZ.cpp,
726	>	applications/Dump2XYZCmd.c, applications/Lattice.cpp,
727	>	applications/Lattice.hpp, applications/LatticeCreator.cpp,
728	>	applications/LatticeCreator.hpp, applications/LatticeFactory.cpp,
729	>	applications/MoLocator.cpp, applications/MoLocator.hpp,
730	>	applications/cmdline.c, applications/nanoBuilder.cpp,
731	>	applications/oopse.cpp, applications/simpleBuilder.cpp,
732	>	applications/simpleBuilderCmd.c, brains/Exclude.cpp,
733	>	brains/ForceFields.cpp, brains/SimInfo.cpp, brains/SimInfo.hpp,
734	>	brains/SimSetup.cpp, brains/SimSetup.hpp, brains/SimState.cpp,
735	>	brains/SkipList.cpp, brains/Thermo.cpp, brains/Thermo.hpp,
736	>	brains/mpiSimulation.cpp, brains/mpiSimulation.hpp,
737	>	constraints/AbstractClasses.hpp, constraints/ZConstraint.cpp,
738	>	integrators/AbstractClasses.hpp, integrators/Integrator.cpp,
739	>	integrators/Integrator.hpp, integrators/NPT.cpp,
740	>	integrators/NPTf.cpp, integrators/NPTi.cpp, integrators/NPTxyz.cpp,
741	>	integrators/NVT.cpp, io/BASS_interface.cpp, io/BASS_parse.c,
742	>	io/DumpReader.cpp, io/DumpWriter.cpp, io/Globals.cpp,
743	>	io/Globals.hpp, io/InitializeFromFile.cpp, io/LinkedAssign.cpp,
744	>	io/LinkedCommand.cpp, io/ReadWrite.hpp, io/StatWriter.cpp,
745	>	io/ZConsReader.cpp, io/ZConsReader.hpp, io/ZConsWriter.cpp,
746	>	io/ZConsWriter.hpp, io/interface.c, io/make_nodes.c,
747	>	io/make_nodes.h, io/mpiBASS.c, io/mpiBASS.h, io/parse_interface.h,
748	>	io/parse_tree.c, io/parse_tree.h, math/Euler3.cpp, math/MatVec3.c,
749	>	math/MatVec3.h, math/randomSPRNG.cpp,
750	>	minimizers/CGFamilyMinimizer.cpp, minimizers/OOPSEMinimizer.cpp,
751	>	minimizers/OOPSEMinimizer.hpp, minimizers/PRCG.cpp,
752	>	minimizers/SDMinimizer.cpp, primitives/AbstractClasses.hpp,
753	>	primitives/Atom.cpp, primitives/Atom.hpp, primitives/Bend.cpp,
754	>	primitives/BendExtensions.cpp, primitives/Bond.cpp,
755	>	primitives/BondExtensions.cpp, primitives/CutoffGroup.hpp,
756	>	primitives/DirectionalAtom.cpp, primitives/DirectionalAtom.hpp,
757	>	primitives/GhostBend.cpp, primitives/Molecule.cpp,
758	>	primitives/Molecule.hpp, primitives/RigidBody.cpp,
759	>	primitives/RigidBody.hpp, primitives/SRI.hpp,
760	>	primitives/StuntDouble.cpp, primitives/StuntDouble.hpp,
761	>	primitives/Torsion.cpp, primitives/TorsionExtensions.cpp,
762	>	profiling/mdProfile.cpp, restraints/Restraints.cpp,
763	>	restraints/Restraints.hpp, types/AtomStamp.cpp,
764	>	types/AtomStamp.hpp, types/BendStamp.cpp, types/BendStamp.hpp,
765	>	types/BondStamp.cpp, types/BondStamp.hpp, types/Component.cpp,
766	>	types/CutoffGroupStamp.cpp, types/CutoffGroupStamp.hpp,
767	>	types/MakeStamps.cpp, types/MakeStamps.hpp,
768	>	types/MoleculeStamp.cpp, types/MoleculeStamp.hpp,
769	>	types/RigidBodyStamp.cpp, types/RigidBodyStamp.hpp,
770	>	types/TorsionStamp.cpp, types/TorsionStamp.hpp,
771	>	types/ZconStamp.cpp, types/ZconStamp.hpp, utils/GenericData.cpp,
772	>	utils/StreamTokenizer.cpp, utils/StringUtils.c,
773	>	utils/StringUtils.cpp, utils/Utility.cpp, utils/fError.c,
774	>	utils/simError.c, visitors/AtomVisitor.cpp,
775	>	visitors/AtomVisitor.hpp, visitors/CompositeVisitor.cpp,
776	>	visitors/CompositeVisitor.hpp, visitors/OtherVisitor.cpp,
777	>	visitors/OtherVisitor.hpp, visitors/RigidBodyVisitor.cpp,
778	>	visitors/RigidBodyVisitor.hpp, visitors/ZconsVisitor.cpp,
779	>	visitors/ZconsVisitor.hpp: change the #include in source files
780	>
781	>	2004-09-23 23:16  gezelter
782	>
783	>	* AUTHORS, ChangeLog, LICENSE, Makefile, README, configure,
784	>	src/Makefile, src/config.h.in, src/constraints/AbstractClasses.hpp,
785	>	src/constraints/Makefile, src/constraints/ZConstraint.cpp,
786	>	src/UseTheForce/DUFF.cpp, src/UseTheForce/EAM_FF.cpp,
787	>	src/UseTheForce/ForceFields.cpp, src/UseTheForce/ForceFields.hpp,
788	>	src/UseTheForce/LJFF.cpp, src/UseTheForce/Makefile,
789	>	src/UseTheForce/WATER.cpp, src/UseTheForce/do_Forces.F90,
790	>	src/UseTheForce/fForceField.h,
791	>	src/UseTheForce/fSwitchingFunction.h,
792	>	src/UseTheForce/fortranWrapDefines.hpp,
793	>	src/UseTheForce/fortranWrappers.cpp,
794	>	src/UseTheForce/fortranWrappers.hpp,
795	>	src/UseTheForce/mpiComponentPlan.h,
796	>	src/UseTheForce/mpiForceField.c, src/UseTheForce/mpiForceField.h,
797	>	src/UseTheForce/mpiSimulation_module.F90,
798	>	src/UseTheForce/wrappers.F90, src/UseTheForce/DarkSide/Makefile,
799	>	src/UseTheForce/DarkSide/atype_module.F90,
800	>	src/UseTheForce/DarkSide/calc_LJ_FF.F90,
801	>	src/UseTheForce/DarkSide/calc_charge_charge.F90,
802	>	src/UseTheForce/DarkSide/calc_dipole_dipole.F90,
803	>	src/UseTheForce/DarkSide/calc_eam.F90,
804	>	src/UseTheForce/DarkSide/calc_gb.F90,
805	>	src/UseTheForce/DarkSide/calc_reaction_field.F90,
806	>	src/UseTheForce/DarkSide/calc_sticky_pair.F90,
807	>	src/UseTheForce/DarkSide/force_globals.F90,
808	>	src/UseTheForce/DarkSide/neighborLists.F90,
809	>	src/UseTheForce/DarkSide/notifyCutoffs.F90,
810	>	src/UseTheForce/DarkSide/switch_module.F90,
811	>	src/io/BASS_interface.h, src/io/BASS_parse.c, src/io/BASS_parse.h,
812	>	src/io/BASSlex.l, src/io/BASSyacc.y, src/io/DumpReader.cpp,
813	>	src/io/DumpWriter.cpp, src/io/Globals.cpp,
814	>	src/io/InitializeFromFile.cpp, src/io/LinkedAssign.hpp,
815	>	src/io/LinkedCommand.cpp, src/io/LinkedCommand.hpp,
816	>	src/io/Makefile, src/io/ReadWrite.hpp, src/io/StatWriter.cpp,
817	>	src/io/ZConsReader.hpp, src/io/ZConsWriter.cpp,
818	>	src/io/ZConsWriter.hpp, src/io/interface.c, src/io/make_nodes.c,
819	>	src/io/make_nodes.h, src/io/mpiBASS.c, src/io/mpiBASS.h,
820	>	src/io/node_list.h, src/io/parse_interface.h, src/io/parse_me.h,
821	>	src/io/parse_tree.c, src/io/parse_tree.h, src/types/AtomStamp.cpp,
822	>	src/types/AtomStamp.hpp, src/types/BendStamp.cpp,
823	>	src/types/BendStamp.hpp, src/types/BondStamp.cpp,
824	>	src/types/BondStamp.hpp, src/types/Component.cpp,
825	>	src/types/Component.hpp, src/types/CutoffGroupStamp.cpp,
826	>	src/types/CutoffGroupStamp.hpp, src/types/MakeStamps.cpp,
827	>	src/types/MakeStamps.hpp, src/types/Makefile,
828	>	src/types/MoleculeStamp.cpp, src/types/MoleculeStamp.hpp,
829	>	src/types/RigidBodyStamp.cpp, src/types/RigidBodyStamp.hpp,
830	>	src/types/TorsionStamp.cpp, src/types/TorsionStamp.hpp,
831	>	src/types/ZconStamp.cpp, src/types/ZconStamp.hpp,
832	>	src/applications/simpleBuilderCmd.h, src/brains/Exclude.cpp,
833	>	src/brains/Exclude.hpp, src/brains/ForceFields.cpp,
834	>	src/brains/Makedepend, src/brains/Makefile, src/brains/SimInfo.cpp,
835	>	src/brains/SimInfo.hpp, src/brains/SimSetup.cpp,
836	>	src/brains/SimSetup.hpp, src/brains/SimState.cpp,
837	>	src/brains/SimState.hpp, src/brains/SkipList.cpp,
838	>	src/brains/SkipList.hpp, src/brains/Thermo.cpp,
839	>	src/brains/Thermo.hpp, src/brains/fSimulation.h,
840	>	src/brains/mpiSimulation.cpp, src/brains/mpiSimulation.hpp,
841	>	src/brains/simulation_module.F90, src/io/BASS_interface.cpp,
842	>	src/io/Globals.hpp, src/io/LinkedAssign.cpp,
843	>	src/io/ZConsReader.cpp, src/math/Euler3.cpp, src/math/Euler3.hpp,
844	>	src/math/Makefile, src/math/MatVec3.c, src/math/MatVec3.h,
845	>	src/math/mt19937ar.c, src/math/randomSPRNG.cpp,
846	>	src/math/randomSPRNG.hpp, src/minimizers/CGFamilyMinimizer.cpp,
847	>	src/minimizers/Makefile, src/minimizers/MinimizerParameterSet.hpp,
848	>	src/minimizers/OOPSEMinimizer.cpp,
849	>	src/minimizers/OOPSEMinimizer.hpp, src/minimizers/PRCG.cpp,
850	>	src/minimizers/SDMinimizer.cpp, src/primitives/AbstractClasses.hpp,
851	>	src/primitives/Atom.cpp, src/primitives/Atom.hpp,
852	>	src/primitives/Bend.cpp, src/primitives/BendExtensions.cpp,
853	>	src/primitives/Bond.cpp, src/primitives/BondExtensions.cpp,
854	>	src/primitives/CutoffGroup.hpp, src/primitives/DirectionalAtom.cpp,
855	>	src/primitives/DirectionalAtom.hpp, src/primitives/GhostBend.cpp,
856	>	src/primitives/Makefile, src/primitives/Molecule.cpp,
857	>	src/primitives/Molecule.hpp, src/primitives/RigidBody.cpp,
858	>	src/primitives/RigidBody.hpp, src/primitives/SRI.hpp,
859	>	src/primitives/StuntDouble.cpp, src/primitives/StuntDouble.hpp,
860	>	src/primitives/Torsion.cpp, src/primitives/TorsionExtensions.cpp,
861	>	src/restraints/Makefile, src/restraints/Restraints.cpp,
862	>	src/restraints/Restraints.hpp, src/utils/GenericData.cpp,
863	>	src/utils/GenericData.hpp, src/utils/Makefile,
864	>	src/utils/StreamTokenizer.cpp, src/utils/StreamTokenizer.hpp,
865	>	src/utils/StringUtils.c, src/utils/StringUtils.cpp,
866	>	src/utils/StringUtils.h, src/utils/StringUtils.hpp,
867	>	src/utils/TypeInfo.hpp, src/utils/Utility.cpp,
868	>	src/utils/Utility.hpp, src/utils/definitions_module.F90,
869	>	src/utils/fError.c, src/utils/oopseMPI_module.F90,
870	>	src/utils/simError.c, src/utils/simError.h,
871	>	src/utils/status_module.F90, src/utils/vector_class.F90,
872	>	src/visitors/AtomVisitor.cpp, src/visitors/AtomVisitor.hpp,
873	>	src/visitors/BaseVisitor.hpp, src/visitors/CompositeVisitor.cpp,
874	>	src/visitors/CompositeVisitor.hpp, src/visitors/Makefile,
875	>	src/visitors/OtherVisitor.cpp, src/visitors/OtherVisitor.hpp,
876	>	src/visitors/RigidBodyVisitor.cpp,
877	>	src/visitors/RigidBodyVisitor.hpp, src/visitors/ZconsVisitor.cpp,
878	>	src/visitors/ZconsVisitor.hpp, make/Makefile, samples/Makefile.in,
879	>	samples/metals/Au-Core-Ag-Shell_Nanoparticle.in,
880	>	samples/metals/Au-Core-Ag-Shell_Nanoparticle.md,
881	>	samples/metals/Au_bulk_FBD.md, samples/metals/Au_bulk_voter.md,
882	>	samples/metals/Au_nanoparticle.md, samples/metals/Makefile.in,
883	>	samples/zcons/Makefile.in, samples/zcons/water.md,
884	>	samples/zcons/zconsFixed.in, samples/zcons/zconsFixed.md,
885	>	samples/zcons/zconsMoving.in, samples/zcons/zconsMoving.md,
886	>	src/applications/BaseLattice.cpp, src/applications/BaseLattice.hpp,
887	>	src/applications/Dump2XYZ.cpp, src/applications/Dump2XYZ.ggo,
888	>	src/applications/Dump2XYZCmd.c, src/applications/Dump2XYZCmd.h,
889	>	src/applications/Lattice.cpp, src/applications/Lattice.hpp,
890	>	src/applications/LatticeCreator.cpp,
891	>	src/applications/LatticeCreator.hpp,
892	>	src/applications/LatticeFactory.cpp,
893	>	src/applications/LatticeFactory.hpp, src/applications/Makedepend,
894	>	src/applications/Makefile, src/applications/MoLocator.cpp,
895	>	src/applications/MoLocator.hpp, src/applications/Vector3d.hpp,
896	>	src/applications/cmdline.c, src/applications/cmdline.h,
897	>	src/applications/getopt.c, src/applications/getopt1.c,
898	>	src/applications/gnugetopt.h, src/applications/nanoBuilder.cpp,
899	>	src/applications/nanoBuilder.hpp, src/applications/oopse.cpp,
900	>	src/applications/quickLate.c, src/applications/simpleBuilder.cpp,
901	>	src/applications/simpleBuilder.ggo,
902	>	src/applications/simpleBuilderCmd.c,
903	>	src/integrators/AbstractClasses.hpp,
904	>	src/integrators/AllIntegrator.hpp, src/integrators/Integrator.cpp,
905	>	src/integrators/Integrator.hpp, src/integrators/Makefile,
906	>	src/integrators/NPT.cpp, src/integrators/NPTf.cpp,
907	>	src/integrators/NPTi.cpp, src/integrators/NPTxyz.cpp,
908	>	src/integrators/NVT.cpp, src/profiling/Makefile,
909	>	src/profiling/mdProfile.cpp, src/profiling/mdProfile.hpp,
910	>	src/profiling/timing.F90, samples/metals/Au_bulk.in,
911	>	samples/metals/Au_nanoparticle.in, samples/metals/metals.md,
912	>	samples/water/Makefile.in, samples/water/dimer/Makefile.in,
913	>	samples/water/dimer/two.in, samples/water/dimer/two.md,
914	>	samples/water/dimer/water.md, samples/water/spce/Makefile.in,
915	>	samples/water/spce/spce.in, samples/water/spce/spce.md,
916	>	samples/water/spce/water.md, samples/water/ssde/Makefile.in,
917	>	samples/water/ssde/ssde.in, samples/water/ssde/ssde.md,
918	>	samples/water/ssde/water.md, samples/water/tip3p_ice/Makefile.in,
919	>	samples/water/tip3p_ice/tp3.in, samples/water/tip3p_ice/tp3.md,
920	>	samples/water/tip3p_ice/water.md, samples/water/ssd/Makefile.in,
921	>	samples/water/ssd/ssd.in, samples/water/ssd/ssd.md,
922	>	samples/water/ssd/water.md, samples/water/tip4p/tp4.in,
923	>	samples/water/tip4p/tp4.md, samples/water/tip4p/water.md,
924	>	samples/alkane/Makefile.in, samples/alkane/alkanes.md,
925	>	samples/alkane/butane.in, samples/alkane/butane.md,
926	>	samples/argon/500.in, samples/argon/500.md,
927	>	samples/argon/Makefile.in, samples/argon/ar864.in,
928	>	samples/argon/ar864.md, samples/argon/argonNVT.in,
929	>	samples/argon/argonNVT.md, samples/argon/lj.md,
930	>	samples/lipid/5x5.in, samples/lipid/5x5.md,
931	>	samples/lipid/Makefile.in, samples/lipid/lipid.md,
932	>	samples/lipid/water.md, samples/minimizer/Makefile.in,
933	>	samples/minimizer/WATER.frc, samples/minimizer/ssdEM.in,
934	>	samples/minimizer/ssdEM.md, samples/minimizer/tip4p_two.in,
935	>	samples/minimizer/tip4p_two.md, samples/minimizer/water.md,
936	>	samples/water/tip4p/Makefile.in, forceFields/Ag.VC.funcfl,
937	>	forceFields/Ag.u3.funcfl, forceFields/Ag.u6.funcfl,
938		forceFields/Au.u6.funcfl, forceFields/Cu.VC.funcfl,
939		forceFields/Cu.u3.funcfl, forceFields/Cu.u6.funcfl,
940		forceFields/DUFF.frc, forceFields/DipoleTest.frc,
941		forceFields/EAM.VC.frc, forceFields/EAM.frc,
942		forceFields/EAM.u3.frc, forceFields/EAM.u6.frc,
943	<	forceFields/LJFF.frc, forceFields/Makefile,
944	<	forceFields/Makefile.in, forceFields/Ni.VC.funcfl,
945	<	forceFields/Ni.u3.funcfl, forceFields/Ni.u6.funcfl,
946	<	forceFields/Pd.VC.funcfl, forceFields/Pd.u3.funcfl,
947	<	forceFields/Pd.u6.funcfl, forceFields/Pt.VC.funcfl,
948	<	forceFields/Pt.u3.funcfl, forceFields/Pt.u6.funcfl,
949	<	forceFields/WATER.frc, libBASS/AtomStamp.cpp,
950	<	libBASS/AtomStamp.hpp, libBASS/BASS_interface.cpp,
951	<	libBASS/BASS_interface.h, libBASS/BASS_parse.c,
952	<	libBASS/BASS_parse.h, libBASS/BASSlex.l, libBASS/BASSyacc.y,
953	<	libBASS/BendStamp.cpp, libBASS/BendStamp.hpp,
954	<	libBASS/BondStamp.cpp, libBASS/BondStamp.hpp,
357	<	libBASS/Component.cpp, libBASS/Component.hpp,
358	<	libBASS/CutoffGroupStamp.cpp, libBASS/CutoffGroupStamp.hpp,
359	<	libBASS/Globals.cpp, libBASS/Globals.hpp, libBASS/LinkedAssign.cpp,
360	<	libBASS/LinkedAssign.hpp, libBASS/LinkedCommand.cpp,
361	<	libBASS/LinkedCommand.hpp, libBASS/Make.dep,
362	<	libBASS/MakeStamps.cpp, libBASS/MakeStamps.hpp, libBASS/Makefile,
363	<	libBASS/Makefile.in, libBASS/MoleculeStamp.cpp,
364	<	libBASS/MoleculeStamp.hpp, libBASS/RigidBodyStamp.cpp,
365	<	libBASS/RigidBodyStamp.hpp, libBASS/TorsionStamp.cpp,
366	<	libBASS/TorsionStamp.hpp, libBASS/ZconStamp.cpp,
367	<	libBASS/ZconStamp.hpp, libBASS/config.h.in, libBASS/fError.c,
368	<	libBASS/interface.c, libBASS/make_nodes.c, libBASS/make_nodes.h,
369	<	libBASS/mpiBASS.c, libBASS/mpiBASS.h, libBASS/node_list.h,
370	<	libBASS/parse_interface.h, libBASS/parse_me.h,
371	<	libBASS/parse_tree.c, libBASS/parse_tree.h, libBASS/simError.c,
372	<	libBASS/simError.h, libBASS/y.tab.h, libBASS/MPIobj/dummy,
373	<	libBASS/obj/dummy, libmdtools/AbstractClasses.hpp,
374	<	libmdtools/AllIntegrator.hpp, libmdtools/Atom.cpp,
375	<	libmdtools/Atom.hpp, libmdtools/AtomVisitor.cpp,
376	<	libmdtools/AtomVisitor.hpp, libmdtools/BaseVisitor.hpp,
377	<	libmdtools/Bend.cpp, libmdtools/BendExtensions.cpp,
378	<	libmdtools/Bond.cpp, libmdtools/BondExtensions.cpp,
379	<	libmdtools/CGFamilyMinimizer.cpp, libmdtools/CompositeVisitor.cpp,
380	<	libmdtools/CompositeVisitor.hpp, libmdtools/CutoffGroup.hpp,
381	<	libmdtools/DUFF.cpp, libmdtools/DirectionalAtom.cpp,
382	<	libmdtools/DirectionalAtom.hpp, libmdtools/DumpReader.cpp,
383	<	libmdtools/DumpWriter.cpp, libmdtools/EAM_FF.cpp,
384	<	libmdtools/Euler3.cpp, libmdtools/Euler3.hpp,
385	<	libmdtools/Exclude.cpp, libmdtools/Exclude.hpp,
386	<	libmdtools/ForceFields.cpp, libmdtools/ForceFields.hpp,
387	<	libmdtools/GenericData.cpp, libmdtools/GenericData.hpp,
388	<	libmdtools/GhostBend.cpp, libmdtools/InitializeFromFile.cpp,
389	<	libmdtools/Integrator.cpp, libmdtools/Integrator.hpp,
390	<	libmdtools/LJFF.cpp, libmdtools/Make.dep, libmdtools/Makefile,
391	<	libmdtools/Makefile.in, libmdtools/MatVec3.c, libmdtools/MatVec3.h,
392	<	libmdtools/MinimizerParameterSet.hpp, libmdtools/Molecule.cpp,
393	<	libmdtools/Molecule.hpp, libmdtools/NPT.cpp, libmdtools/NPTf.cpp,
394	<	libmdtools/NPTi.cpp, libmdtools/NPTxyz.cpp, libmdtools/NVT.cpp,
395	<	libmdtools/OOPSEMinimizer.cpp, libmdtools/OOPSEMinimizer.hpp,
396	<	libmdtools/OtherVisitor.cpp, libmdtools/OtherVisitor.hpp,
397	<	libmdtools/PRCG.cpp, libmdtools/ReadWrite.hpp,
398	<	libmdtools/Restraints.cpp, libmdtools/Restraints.hpp,
399	<	libmdtools/RigidBody.cpp, libmdtools/RigidBody.hpp,
400	<	libmdtools/RigidBodyVisitor.cpp, libmdtools/RigidBodyVisitor.hpp,
401	<	libmdtools/SDMinimizer.cpp, libmdtools/SRI.hpp,
402	<	libmdtools/SimInfo.cpp, libmdtools/SimInfo.hpp,
403	<	libmdtools/SimSetup.cpp, libmdtools/SimSetup.hpp,
404	<	libmdtools/SimState.cpp, libmdtools/SimState.hpp,
405	<	libmdtools/SkipList.cpp, libmdtools/SkipList.hpp,
406	<	libmdtools/StatWriter.cpp, libmdtools/StreamTokenizer.cpp,
407	<	libmdtools/StreamTokenizer.hpp, libmdtools/StringUtils.c,
408	<	libmdtools/StringUtils.h, libmdtools/StuntDouble.cpp,
409	<	libmdtools/StuntDouble.hpp, libmdtools/Thermo.cpp,
410	<	libmdtools/Thermo.hpp, libmdtools/Torsion.cpp,
411	<	libmdtools/TorsionExtensions.cpp, libmdtools/TypeInfo.hpp,
412	<	libmdtools/Utility.cpp, libmdtools/Utility.hpp,
413	<	libmdtools/WATER.cpp, libmdtools/ZConsReader.cpp,
414	<	libmdtools/ZConsReader.hpp, libmdtools/ZConsWriter.cpp,
415	<	libmdtools/ZConsWriter.hpp, libmdtools/ZConstraint.cpp,
416	<	libmdtools/ZconsVisitor.cpp, libmdtools/ZconsVisitor.hpp,
417	<	libmdtools/atype_module.F90, libmdtools/calc_LJ_FF.F90,
418	<	libmdtools/calc_charge_charge.F90,
419	<	libmdtools/calc_dipole_dipole.F90, libmdtools/calc_eam.F90,
420	<	libmdtools/calc_gb.F90, libmdtools/calc_reaction_field.F90,
421	<	libmdtools/calc_sticky_pair.F90, libmdtools/config.h.in,
422	<	libmdtools/definitions_module.F90, libmdtools/do_Forces.F90,
423	<	libmdtools/fForceField.h, libmdtools/fSimulation.h,
424	<	libmdtools/fSwitchingFunction.h, libmdtools/forceFactory.hpp,
425	<	libmdtools/force_globals.F90, libmdtools/fortranWrapDefines.hpp,
426	<	libmdtools/fortranWrappers.cpp, libmdtools/fortranWrappers.hpp,
427	<	libmdtools/mdProfile.cpp, libmdtools/mdProfile.hpp,
428	<	libmdtools/mpiComponentPlan.h, libmdtools/mpiForceField.c,
429	<	libmdtools/mpiForceField.h, libmdtools/mpiSimulation.cpp,
430	<	libmdtools/mpiSimulation.hpp, libmdtools/mpiSimulation_module.F90,
431	<	libmdtools/neighborLists.F90, libmdtools/notifyCutoffs.F90,
432	<	libmdtools/oopseMPI_module.F90, libmdtools/randomSPRNG.cpp,
433	<	libmdtools/randomSPRNG.hpp, libmdtools/simulation_module.F90,
434	<	libmdtools/status_module.F90, libmdtools/switch_module.F90,
435	<	libmdtools/timing.F90, libmdtools/vector_class.F90,
436	<	libmdtools/wrappers.F90, libmdtools/MPIobj/dummy,
437	<	libmdtools/obj/dummy, samples/Makefile, samples/Makefile.in,
438	<	samples/alkane/Makefile, samples/alkane/Makefile.in,
439	<	samples/alkane/alkanes.mdl, samples/alkane/butane.bass,
440	<	samples/alkane/butane.eor, samples/alkane/init_butane.eor,
441	<	samples/argon/500.bass, samples/argon/500.eor,
442	<	samples/argon/500.in, samples/argon/Makefile,
443	<	samples/argon/Makefile.in, samples/argon/NVT.bass,
444	<	samples/argon/ar864.bass, samples/argon/ar864.eor,
445	<	samples/argon/ar864.in, samples/argon/argon.bass,
446	<	samples/argon/argon.eor, samples/argon/argonEM.bass,
447	<	samples/argon/init_argon.eor, samples/argon/lj.mdl,
448	<	samples/argon/machines, samples/lipid/5x5.bass,
449	<	samples/lipid/5x5.eor, samples/lipid/Makefile,
450	<	samples/lipid/Makefile.in, samples/lipid/init_5x5.eor,
451	<	samples/lipid/lipid.mdl, samples/lipid/water.mdl,
452	<	samples/metals/Au.bass, samples/metals/Au.eor,
453	<	samples/metals/Makefile, samples/metals/Makefile.in,
454	<	samples/metals/init_au.in, samples/metals/metals.mdl,
455	<	samples/water/200.in, samples/water/Makefile,
456	<	samples/water/Makefile.in, samples/water/init_ssd.eor,
457	<	samples/water/spce.bass, samples/water/spce.eor,
458	<	samples/water/ssd.bass, samples/water/ssd.eor,
459	<	samples/water/tim.bass, samples/water/tim.eor,
460	<	samples/water/tim.init, samples/water/tim.xyz,
461	<	samples/water/tip3p.bass, samples/water/tip3p.eor,
462	<	samples/water/tip3p.init, samples/water/two.bass,
463	<	samples/water/two.eor, samples/water/two.init,
464	<	samples/water/two.xyz, samples/water/water.mdl,
465	<	samples/water/spce/SPCEinit.in, samples/water/spce/spce.bass,
466	<	samples/water/spce/water.mdl, samples/water/ssde/256init.in,
467	<	samples/water/ssde/ssde.bass, samples/water/ssde/water.mdl,
468	<	samples/water/tip4p/TP4init.in, samples/water/tip4p/tp4.bass,
469	<	samples/water/tip4p/water.mdl, scripts/cleanSrc, scripts/cvs2cl.pl,
470	<	scripts/sfmakedepend, src/Make.dep, src/Makefile, src/Makefile.in,
471	<	src/oopse.cpp, src/oose.cpp, src/MPIobj/dummy, src/obj/dummy,
472	<	third-party/Makefile, third-party/Makefile.in,
473	<	third-party/mt19937ar.c, utils/Dump2XYZ.cpp, utils/Dump2XYZ.ggo,
474	<	utils/Dump2XYZCmd.c, utils/Dump2XYZCmd.h, utils/Make.dep,
475	<	utils/Makefile, utils/Makefile.in, utils/quickLate.c, utils/zsub,
476	<	utils/MPIobj/placeHolder, utils/obj/placeHolder,
477	<	utils/sysbuilder/Make.dep, utils/sysbuilder/Makefile,
478	<	utils/sysbuilder/Makefile.in, utils/sysbuilder/MoLocator.cpp,
479	<	utils/sysbuilder/MoLocator.hpp, utils/sysbuilder/cmdline.c,
480	<	utils/sysbuilder/cmdline.h, utils/sysbuilder/latticeBilayer.cpp,
481	<	utils/sysbuilder/latticeBuilder.cpp,
482	<	utils/sysbuilder/latticeBuilder.hpp,
483	<	utils/sysbuilder/nanoBuilder.cpp, utils/sysbuilder/nanoBuilder.hpp,
484	<	utils/sysbuilder/randomBilayer.cpp, utils/sysbuilder/sysBuild.cpp,
485	<	utils/sysbuilder/sysBuild.ggo, utils/sysbuilder/sysBuild.hpp,
486	<	utils/sysbuilder/MPIobj/placeHolder,
487	<	utils/sysbuilder/obj/placeHolder: Initial import of OOPSE-1.0
488	<	source tree
943	>	forceFields/Makefile.in, forceFields/Ni.u3.funcfl,
944	>	forceFields/Ni.u6.funcfl, forceFields/Pd.VC.funcfl,
945	>	forceFields/Pd.u6.funcfl, forceFields/Pt.u3.funcfl,
946	>	forceFields/Pt.u6.funcfl, forceFields/WATER.frc, scripts/cleanSrc,
947	>	scripts/cvs2cl.pl, scripts/makers, scripts/sfmakedepend,
948	>	ac-tools/Make.conf.in, ac-tools/aclocal.m4, ac-tools/config.guess,
949	>	ac-tools/config.sub, ac-tools/configure.in, ac-tools/fortran90.m4,
950	>	ac-tools/install-sh, ac-tools/shtool, doc/OOPSE.pdf,
951	>	forceFields/Al.VC.funcfl, forceFields/Au.VC.funcfl,
952	>	forceFields/Au.u3.funcfl, forceFields/LJFF.frc,
953	>	forceFields/Ni.VC.funcfl, forceFields/Pd.u3.funcfl,
954	>	forceFields/Pt.VC.funcfl: Import of OOPSE v. 2.0
955
956	<	2004-07-16 13:57  gezelter
956	>	2004-09-23 23:16  gezelter
957
958	<	* AUTHORS, ChangeLog, LICENSE, Makefile, Makefile.in, NEWS, README,
959	<	configure, ac-tools/Make.conf.in, ac-tools/aclocal.m4,
960	<	ac-tools/config.guess, ac-tools/config.sub, ac-tools/configure.in,
961	<	ac-tools/fortran90.m4, ac-tools/install-sh, ac-tools/shtool,
962	<	forceFields/Ag.VC.funcfl, forceFields/Ag.u3.funcfl,
963	<	forceFields/Ag.u6.funcfl, forceFields/Al.VC.funcfl,
964	<	forceFields/Au.VC.funcfl, forceFields/Au.u3.funcfl,
958	>	* AUTHORS, ChangeLog, LICENSE, Makefile, README, configure,
959	>	src/Makefile, src/config.h.in, src/constraints/AbstractClasses.hpp,
960	>	src/constraints/Makefile, src/constraints/ZConstraint.cpp,
961	>	src/UseTheForce/DUFF.cpp, src/UseTheForce/EAM_FF.cpp,
962	>	src/UseTheForce/ForceFields.cpp, src/UseTheForce/ForceFields.hpp,
963	>	src/UseTheForce/LJFF.cpp, src/UseTheForce/Makefile,
964	>	src/UseTheForce/WATER.cpp, src/UseTheForce/do_Forces.F90,
965	>	src/UseTheForce/fForceField.h,
966	>	src/UseTheForce/fSwitchingFunction.h,
967	>	src/UseTheForce/fortranWrapDefines.hpp,
968	>	src/UseTheForce/fortranWrappers.cpp,
969	>	src/UseTheForce/fortranWrappers.hpp,
970	>	src/UseTheForce/mpiComponentPlan.h,
971	>	src/UseTheForce/mpiForceField.c, src/UseTheForce/mpiForceField.h,
972	>	src/UseTheForce/mpiSimulation_module.F90,
973	>	src/UseTheForce/wrappers.F90, src/UseTheForce/DarkSide/Makefile,
974	>	src/UseTheForce/DarkSide/atype_module.F90,
975	>	src/UseTheForce/DarkSide/calc_LJ_FF.F90,
976	>	src/UseTheForce/DarkSide/calc_charge_charge.F90,
977	>	src/UseTheForce/DarkSide/calc_dipole_dipole.F90,
978	>	src/UseTheForce/DarkSide/calc_eam.F90,
979	>	src/UseTheForce/DarkSide/calc_gb.F90,
980	>	src/UseTheForce/DarkSide/calc_reaction_field.F90,
981	>	src/UseTheForce/DarkSide/calc_sticky_pair.F90,
982	>	src/UseTheForce/DarkSide/force_globals.F90,
983	>	src/UseTheForce/DarkSide/neighborLists.F90,
984	>	src/UseTheForce/DarkSide/notifyCutoffs.F90,
985	>	src/UseTheForce/DarkSide/switch_module.F90,
986	>	src/io/BASS_interface.h, src/io/BASS_parse.c, src/io/BASS_parse.h,
987	>	src/io/BASSlex.l, src/io/BASSyacc.y, src/io/DumpReader.cpp,
988	>	src/io/DumpWriter.cpp, src/io/Globals.cpp,
989	>	src/io/InitializeFromFile.cpp, src/io/LinkedAssign.hpp,
990	>	src/io/LinkedCommand.cpp, src/io/LinkedCommand.hpp,
991	>	src/io/Makefile, src/io/ReadWrite.hpp, src/io/StatWriter.cpp,
992	>	src/io/ZConsReader.hpp, src/io/ZConsWriter.cpp,
993	>	src/io/ZConsWriter.hpp, src/io/interface.c, src/io/make_nodes.c,
994	>	src/io/make_nodes.h, src/io/mpiBASS.c, src/io/mpiBASS.h,
995	>	src/io/node_list.h, src/io/parse_interface.h, src/io/parse_me.h,
996	>	src/io/parse_tree.c, src/io/parse_tree.h, src/types/AtomStamp.cpp,
997	>	src/types/AtomStamp.hpp, src/types/BendStamp.cpp,
998	>	src/types/BendStamp.hpp, src/types/BondStamp.cpp,
999	>	src/types/BondStamp.hpp, src/types/Component.cpp,
1000	>	src/types/Component.hpp, src/types/CutoffGroupStamp.cpp,
1001	>	src/types/CutoffGroupStamp.hpp, src/types/MakeStamps.cpp,
1002	>	src/types/MakeStamps.hpp, src/types/Makefile,
1003	>	src/types/MoleculeStamp.cpp, src/types/MoleculeStamp.hpp,
1004	>	src/types/RigidBodyStamp.cpp, src/types/RigidBodyStamp.hpp,
1005	>	src/types/TorsionStamp.cpp, src/types/TorsionStamp.hpp,
1006	>	src/types/ZconStamp.cpp, src/types/ZconStamp.hpp,
1007	>	src/applications/simpleBuilderCmd.h, src/brains/Exclude.cpp,
1008	>	src/brains/Exclude.hpp, src/brains/ForceFields.cpp,
1009	>	src/brains/Makedepend, src/brains/Makefile, src/brains/SimInfo.cpp,
1010	>	src/brains/SimInfo.hpp, src/brains/SimSetup.cpp,
1011	>	src/brains/SimSetup.hpp, src/brains/SimState.cpp,
1012	>	src/brains/SimState.hpp, src/brains/SkipList.cpp,
1013	>	src/brains/SkipList.hpp, src/brains/Thermo.cpp,
1014	>	src/brains/Thermo.hpp, src/brains/fSimulation.h,
1015	>	src/brains/mpiSimulation.cpp, src/brains/mpiSimulation.hpp,
1016	>	src/brains/simulation_module.F90, src/io/BASS_interface.cpp,
1017	>	src/io/Globals.hpp, src/io/LinkedAssign.cpp,
1018	>	src/io/ZConsReader.cpp, src/math/Euler3.cpp, src/math/Euler3.hpp,
1019	>	src/math/Makefile, src/math/MatVec3.c, src/math/MatVec3.h,
1020	>	src/math/mt19937ar.c, src/math/randomSPRNG.cpp,
1021	>	src/math/randomSPRNG.hpp, src/minimizers/CGFamilyMinimizer.cpp,
1022	>	src/minimizers/Makefile, src/minimizers/MinimizerParameterSet.hpp,
1023	>	src/minimizers/OOPSEMinimizer.cpp,
1024	>	src/minimizers/OOPSEMinimizer.hpp, src/minimizers/PRCG.cpp,
1025	>	src/minimizers/SDMinimizer.cpp, src/primitives/AbstractClasses.hpp,
1026	>	src/primitives/Atom.cpp, src/primitives/Atom.hpp,
1027	>	src/primitives/Bend.cpp, src/primitives/BendExtensions.cpp,
1028	>	src/primitives/Bond.cpp, src/primitives/BondExtensions.cpp,
1029	>	src/primitives/CutoffGroup.hpp, src/primitives/DirectionalAtom.cpp,
1030	>	src/primitives/DirectionalAtom.hpp, src/primitives/GhostBend.cpp,
1031	>	src/primitives/Makefile, src/primitives/Molecule.cpp,
1032	>	src/primitives/Molecule.hpp, src/primitives/RigidBody.cpp,
1033	>	src/primitives/RigidBody.hpp, src/primitives/SRI.hpp,
1034	>	src/primitives/StuntDouble.cpp, src/primitives/StuntDouble.hpp,
1035	>	src/primitives/Torsion.cpp, src/primitives/TorsionExtensions.cpp,
1036	>	src/restraints/Makefile, src/restraints/Restraints.cpp,
1037	>	src/restraints/Restraints.hpp, src/utils/GenericData.cpp,
1038	>	src/utils/GenericData.hpp, src/utils/Makefile,
1039	>	src/utils/StreamTokenizer.cpp, src/utils/StreamTokenizer.hpp,
1040	>	src/utils/StringUtils.c, src/utils/StringUtils.cpp,
1041	>	src/utils/StringUtils.h, src/utils/StringUtils.hpp,
1042	>	src/utils/TypeInfo.hpp, src/utils/Utility.cpp,
1043	>	src/utils/Utility.hpp, src/utils/definitions_module.F90,
1044	>	src/utils/fError.c, src/utils/oopseMPI_module.F90,
1045	>	src/utils/simError.c, src/utils/simError.h,
1046	>	src/utils/status_module.F90, src/utils/vector_class.F90,
1047	>	src/visitors/AtomVisitor.cpp, src/visitors/AtomVisitor.hpp,
1048	>	src/visitors/BaseVisitor.hpp, src/visitors/CompositeVisitor.cpp,
1049	>	src/visitors/CompositeVisitor.hpp, src/visitors/Makefile,
1050	>	src/visitors/OtherVisitor.cpp, src/visitors/OtherVisitor.hpp,
1051	>	src/visitors/RigidBodyVisitor.cpp,
1052	>	src/visitors/RigidBodyVisitor.hpp, src/visitors/ZconsVisitor.cpp,
1053	>	src/visitors/ZconsVisitor.hpp, make/Makefile, samples/Makefile.in,
1054	>	samples/metals/Au-Core-Ag-Shell_Nanoparticle.in,
1055	>	samples/metals/Au-Core-Ag-Shell_Nanoparticle.md,
1056	>	samples/metals/Au_bulk_FBD.md, samples/metals/Au_bulk_voter.md,
1057	>	samples/metals/Au_nanoparticle.md, samples/metals/Makefile.in,
1058	>	samples/zcons/Makefile.in, samples/zcons/water.md,
1059	>	samples/zcons/zconsFixed.in, samples/zcons/zconsFixed.md,
1060	>	samples/zcons/zconsMoving.in, samples/zcons/zconsMoving.md,
1061	>	src/applications/BaseLattice.cpp, src/applications/BaseLattice.hpp,
1062	>	src/applications/Dump2XYZ.cpp, src/applications/Dump2XYZ.ggo,
1063	>	src/applications/Dump2XYZCmd.c, src/applications/Dump2XYZCmd.h,
1064	>	src/applications/Lattice.cpp, src/applications/Lattice.hpp,
1065	>	src/applications/LatticeCreator.cpp,
1066	>	src/applications/LatticeCreator.hpp,
1067	>	src/applications/LatticeFactory.cpp,
1068	>	src/applications/LatticeFactory.hpp, src/applications/Makedepend,
1069	>	src/applications/Makefile, src/applications/MoLocator.cpp,
1070	>	src/applications/MoLocator.hpp, src/applications/Vector3d.hpp,
1071	>	src/applications/cmdline.c, src/applications/cmdline.h,
1072	>	src/applications/getopt.c, src/applications/getopt1.c,
1073	>	src/applications/gnugetopt.h, src/applications/nanoBuilder.cpp,
1074	>	src/applications/nanoBuilder.hpp, src/applications/oopse.cpp,
1075	>	src/applications/quickLate.c, src/applications/simpleBuilder.cpp,
1076	>	src/applications/simpleBuilder.ggo,
1077	>	src/applications/simpleBuilderCmd.c,
1078	>	src/integrators/AbstractClasses.hpp,
1079	>	src/integrators/AllIntegrator.hpp, src/integrators/Integrator.cpp,
1080	>	src/integrators/Integrator.hpp, src/integrators/Makefile,
1081	>	src/integrators/NPT.cpp, src/integrators/NPTf.cpp,
1082	>	src/integrators/NPTi.cpp, src/integrators/NPTxyz.cpp,
1083	>	src/integrators/NVT.cpp, src/profiling/Makefile,
1084	>	src/profiling/mdProfile.cpp, src/profiling/mdProfile.hpp,
1085	>	src/profiling/timing.F90, samples/metals/Au_bulk.in,
1086	>	samples/metals/Au_nanoparticle.in, samples/metals/metals.md,
1087	>	samples/water/Makefile.in, samples/water/dimer/Makefile.in,
1088	>	samples/water/dimer/two.in, samples/water/dimer/two.md,
1089	>	samples/water/dimer/water.md, samples/water/spce/Makefile.in,
1090	>	samples/water/spce/spce.in, samples/water/spce/spce.md,
1091	>	samples/water/spce/water.md, samples/water/ssde/Makefile.in,
1092	>	samples/water/ssde/ssde.in, samples/water/ssde/ssde.md,
1093	>	samples/water/ssde/water.md, samples/water/tip3p_ice/Makefile.in,
1094	>	samples/water/tip3p_ice/tp3.in, samples/water/tip3p_ice/tp3.md,
1095	>	samples/water/tip3p_ice/water.md, samples/water/ssd/Makefile.in,
1096	>	samples/water/ssd/ssd.in, samples/water/ssd/ssd.md,
1097	>	samples/water/ssd/water.md, samples/water/tip4p/tp4.in,
1098	>	samples/water/tip4p/tp4.md, samples/water/tip4p/water.md,
1099	>	samples/alkane/Makefile.in, samples/alkane/alkanes.md,
1100	>	samples/alkane/butane.in, samples/alkane/butane.md,
1101	>	samples/argon/500.in, samples/argon/500.md,
1102	>	samples/argon/Makefile.in, samples/argon/ar864.in,
1103	>	samples/argon/ar864.md, samples/argon/argonNVT.in,
1104	>	samples/argon/argonNVT.md, samples/argon/lj.md,
1105	>	samples/lipid/5x5.in, samples/lipid/5x5.md,
1106	>	samples/lipid/Makefile.in, samples/lipid/lipid.md,
1107	>	samples/lipid/water.md, samples/minimizer/Makefile.in,
1108	>	samples/minimizer/WATER.frc, samples/minimizer/ssdEM.in,
1109	>	samples/minimizer/ssdEM.md, samples/minimizer/tip4p_two.in,
1110	>	samples/minimizer/tip4p_two.md, samples/minimizer/water.md,
1111	>	samples/water/tip4p/Makefile.in, forceFields/Ag.VC.funcfl,
1112	>	forceFields/Ag.u3.funcfl, forceFields/Ag.u6.funcfl,
1113		forceFields/Au.u6.funcfl, forceFields/Cu.VC.funcfl,
1114		forceFields/Cu.u3.funcfl, forceFields/Cu.u6.funcfl,
1115		forceFields/DUFF.frc, forceFields/DipoleTest.frc,
1116		forceFields/EAM.VC.frc, forceFields/EAM.frc,
1117		forceFields/EAM.u3.frc, forceFields/EAM.u6.frc,
1118	<	forceFields/LJFF.frc, forceFields/Makefile,
1119	<	forceFields/Makefile.in, forceFields/Ni.VC.funcfl,
1120	<	forceFields/Ni.u3.funcfl, forceFields/Ni.u6.funcfl,
1121	<	forceFields/Pd.VC.funcfl, forceFields/Pd.u3.funcfl,
1122	<	forceFields/Pd.u6.funcfl, forceFields/Pt.VC.funcfl,
1123	<	forceFields/Pt.u3.funcfl, forceFields/Pt.u6.funcfl,
1124	<	forceFields/WATER.frc, libBASS/AtomStamp.cpp,
1125	<	libBASS/AtomStamp.hpp, libBASS/BASS_interface.cpp,
1126	<	libBASS/BASS_interface.h, libBASS/BASS_parse.c,
1127	<	libBASS/BASS_parse.h, libBASS/BASSlex.l, libBASS/BASSyacc.y,
1128	<	libBASS/BendStamp.cpp, libBASS/BendStamp.hpp,
1129	<	libBASS/BondStamp.cpp, libBASS/BondStamp.hpp,
516	<	libBASS/Component.cpp, libBASS/Component.hpp,
517	<	libBASS/CutoffGroupStamp.cpp, libBASS/CutoffGroupStamp.hpp,
518	<	libBASS/Globals.cpp, libBASS/Globals.hpp, libBASS/LinkedAssign.cpp,
519	<	libBASS/LinkedAssign.hpp, libBASS/LinkedCommand.cpp,
520	<	libBASS/LinkedCommand.hpp, libBASS/Make.dep,
521	<	libBASS/MakeStamps.cpp, libBASS/MakeStamps.hpp, libBASS/Makefile,
522	<	libBASS/Makefile.in, libBASS/MoleculeStamp.cpp,
523	<	libBASS/MoleculeStamp.hpp, libBASS/RigidBodyStamp.cpp,
524	<	libBASS/RigidBodyStamp.hpp, libBASS/TorsionStamp.cpp,
525	<	libBASS/TorsionStamp.hpp, libBASS/ZconStamp.cpp,
526	<	libBASS/ZconStamp.hpp, libBASS/config.h.in, libBASS/fError.c,
527	<	libBASS/interface.c, libBASS/make_nodes.c, libBASS/make_nodes.h,
528	<	libBASS/mpiBASS.c, libBASS/mpiBASS.h, libBASS/node_list.h,
529	<	libBASS/parse_interface.h, libBASS/parse_me.h,
530	<	libBASS/parse_tree.c, libBASS/parse_tree.h, libBASS/simError.c,
531	<	libBASS/simError.h, libBASS/y.tab.h, libBASS/MPIobj/dummy,
532	<	libBASS/obj/dummy, libmdtools/AbstractClasses.hpp,
533	<	libmdtools/AllIntegrator.hpp, libmdtools/Atom.cpp,
534	<	libmdtools/Atom.hpp, libmdtools/AtomVisitor.cpp,
535	<	libmdtools/AtomVisitor.hpp, libmdtools/BaseVisitor.hpp,
536	<	libmdtools/Bend.cpp, libmdtools/BendExtensions.cpp,
537	<	libmdtools/Bond.cpp, libmdtools/BondExtensions.cpp,
538	<	libmdtools/CGFamilyMinimizer.cpp, libmdtools/CompositeVisitor.cpp,
539	<	libmdtools/CompositeVisitor.hpp, libmdtools/CutoffGroup.hpp,
540	<	libmdtools/DUFF.cpp, libmdtools/DirectionalAtom.cpp,
541	<	libmdtools/DirectionalAtom.hpp, libmdtools/DumpReader.cpp,
542	<	libmdtools/DumpWriter.cpp, libmdtools/EAM_FF.cpp,
543	<	libmdtools/Euler3.cpp, libmdtools/Euler3.hpp,
544	<	libmdtools/Exclude.cpp, libmdtools/Exclude.hpp,
545	<	libmdtools/ForceFields.cpp, libmdtools/ForceFields.hpp,
546	<	libmdtools/GenericData.cpp, libmdtools/GenericData.hpp,
547	<	libmdtools/GhostBend.cpp, libmdtools/InitializeFromFile.cpp,
548	<	libmdtools/Integrator.cpp, libmdtools/Integrator.hpp,
549	<	libmdtools/LJFF.cpp, libmdtools/Make.dep, libmdtools/Makefile,
550	<	libmdtools/Makefile.in, libmdtools/MatVec3.c, libmdtools/MatVec3.h,
551	<	libmdtools/MinimizerParameterSet.hpp, libmdtools/Molecule.cpp,
552	<	libmdtools/Molecule.hpp, libmdtools/NPT.cpp, libmdtools/NPTf.cpp,
553	<	libmdtools/NPTi.cpp, libmdtools/NPTxyz.cpp, libmdtools/NVT.cpp,
554	<	libmdtools/OOPSEMinimizer.cpp, libmdtools/OOPSEMinimizer.hpp,
555	<	libmdtools/OtherVisitor.cpp, libmdtools/OtherVisitor.hpp,
556	<	libmdtools/PRCG.cpp, libmdtools/ReadWrite.hpp,
557	<	libmdtools/Restraints.cpp, libmdtools/Restraints.hpp,
558	<	libmdtools/RigidBody.cpp, libmdtools/RigidBody.hpp,
559	<	libmdtools/RigidBodyVisitor.cpp, libmdtools/RigidBodyVisitor.hpp,
560	<	libmdtools/SDMinimizer.cpp, libmdtools/SRI.hpp,
561	<	libmdtools/SimInfo.cpp, libmdtools/SimInfo.hpp,
562	<	libmdtools/SimSetup.cpp, libmdtools/SimSetup.hpp,
563	<	libmdtools/SimState.cpp, libmdtools/SimState.hpp,
564	<	libmdtools/SkipList.cpp, libmdtools/SkipList.hpp,
565	<	libmdtools/StatWriter.cpp, libmdtools/StreamTokenizer.cpp,
566	<	libmdtools/StreamTokenizer.hpp, libmdtools/StringUtils.c,
567	<	libmdtools/StringUtils.h, libmdtools/StuntDouble.cpp,
568	<	libmdtools/StuntDouble.hpp, libmdtools/Thermo.cpp,
569	<	libmdtools/Thermo.hpp, libmdtools/Torsion.cpp,
570	<	libmdtools/TorsionExtensions.cpp, libmdtools/TypeInfo.hpp,
571	<	libmdtools/Utility.cpp, libmdtools/Utility.hpp,
572	<	libmdtools/WATER.cpp, libmdtools/ZConsReader.cpp,
573	<	libmdtools/ZConsReader.hpp, libmdtools/ZConsWriter.cpp,
574	<	libmdtools/ZConsWriter.hpp, libmdtools/ZConstraint.cpp,
575	<	libmdtools/ZconsVisitor.cpp, libmdtools/ZconsVisitor.hpp,
576	<	libmdtools/atype_module.F90, libmdtools/calc_LJ_FF.F90,
577	<	libmdtools/calc_charge_charge.F90,
578	<	libmdtools/calc_dipole_dipole.F90, libmdtools/calc_eam.F90,
579	<	libmdtools/calc_gb.F90, libmdtools/calc_reaction_field.F90,
580	<	libmdtools/calc_sticky_pair.F90, libmdtools/config.h.in,
581	<	libmdtools/definitions_module.F90, libmdtools/do_Forces.F90,
582	<	libmdtools/fForceField.h, libmdtools/fSimulation.h,
583	<	libmdtools/fSwitchingFunction.h, libmdtools/forceFactory.hpp,
584	<	libmdtools/force_globals.F90, libmdtools/fortranWrapDefines.hpp,
585	<	libmdtools/fortranWrappers.cpp, libmdtools/fortranWrappers.hpp,
586	<	libmdtools/mdProfile.cpp, libmdtools/mdProfile.hpp,
587	<	libmdtools/mpiComponentPlan.h, libmdtools/mpiForceField.c,
588	<	libmdtools/mpiForceField.h, libmdtools/mpiSimulation.cpp,
589	<	libmdtools/mpiSimulation.hpp, libmdtools/mpiSimulation_module.F90,
590	<	libmdtools/neighborLists.F90, libmdtools/notifyCutoffs.F90,
591	<	libmdtools/oopseMPI_module.F90, libmdtools/randomSPRNG.cpp,
592	<	libmdtools/randomSPRNG.hpp, libmdtools/simulation_module.F90,
593	<	libmdtools/status_module.F90, libmdtools/switch_module.F90,
594	<	libmdtools/timing.F90, libmdtools/vector_class.F90,
595	<	libmdtools/wrappers.F90, libmdtools/MPIobj/dummy,
596	<	libmdtools/obj/dummy, samples/Makefile, samples/Makefile.in,
597	<	samples/alkane/Makefile, samples/alkane/Makefile.in,
598	<	samples/alkane/alkanes.mdl, samples/alkane/butane.bass,
599	<	samples/alkane/butane.eor, samples/alkane/init_butane.eor,
600	<	samples/argon/500.bass, samples/argon/500.eor,
601	<	samples/argon/500.in, samples/argon/Makefile,
602	<	samples/argon/Makefile.in, samples/argon/NVT.bass,
603	<	samples/argon/ar864.bass, samples/argon/ar864.eor,
604	<	samples/argon/ar864.in, samples/argon/argon.bass,
605	<	samples/argon/argon.eor, samples/argon/argonEM.bass,
606	<	samples/argon/init_argon.eor, samples/argon/lj.mdl,
607	<	samples/argon/machines, samples/lipid/5x5.bass,
608	<	samples/lipid/5x5.eor, samples/lipid/Makefile,
609	<	samples/lipid/Makefile.in, samples/lipid/init_5x5.eor,
610	<	samples/lipid/lipid.mdl, samples/lipid/water.mdl,
611	<	samples/metals/Au.bass, samples/metals/Au.eor,
612	<	samples/metals/Makefile, samples/metals/Makefile.in,
613	<	samples/metals/init_au.in, samples/metals/metals.mdl,
614	<	samples/water/200.in, samples/water/Makefile,
615	<	samples/water/Makefile.in, samples/water/init_ssd.eor,
616	<	samples/water/spce.bass, samples/water/spce.eor,
617	<	samples/water/ssd.bass, samples/water/ssd.eor,
618	<	samples/water/tim.bass, samples/water/tim.eor,
619	<	samples/water/tim.init, samples/water/tim.xyz,
620	<	samples/water/tip3p.bass, samples/water/tip3p.eor,
621	<	samples/water/tip3p.init, samples/water/two.bass,
622	<	samples/water/two.eor, samples/water/two.init,
623	<	samples/water/two.xyz, samples/water/water.mdl,
624	<	samples/water/spce/SPCEinit.in, samples/water/spce/spce.bass,
625	<	samples/water/spce/water.mdl, samples/water/ssde/256init.in,
626	<	samples/water/ssde/ssde.bass, samples/water/ssde/water.mdl,
627	<	samples/water/tip4p/TP4init.in, samples/water/tip4p/tp4.bass,
628	<	samples/water/tip4p/water.mdl, scripts/cleanSrc, scripts/cvs2cl.pl,
629	<	scripts/sfmakedepend, src/Make.dep, src/Makefile, src/Makefile.in,
630	<	src/oopse.cpp, src/oose.cpp, src/MPIobj/dummy, src/obj/dummy,
631	<	third-party/Makefile, third-party/Makefile.in,
632	<	third-party/mt19937ar.c, utils/Dump2XYZ.cpp, utils/Dump2XYZ.ggo,
633	<	utils/Dump2XYZCmd.c, utils/Dump2XYZCmd.h, utils/Make.dep,
634	<	utils/Makefile, utils/Makefile.in, utils/quickLate.c, utils/zsub,
635	<	utils/MPIobj/placeHolder, utils/obj/placeHolder,
636	<	utils/sysbuilder/Make.dep, utils/sysbuilder/Makefile,
637	<	utils/sysbuilder/Makefile.in, utils/sysbuilder/MoLocator.cpp,
638	<	utils/sysbuilder/MoLocator.hpp, utils/sysbuilder/cmdline.c,
639	<	utils/sysbuilder/cmdline.h, utils/sysbuilder/latticeBilayer.cpp,
640	<	utils/sysbuilder/latticeBuilder.cpp,
641	<	utils/sysbuilder/latticeBuilder.hpp,
642	<	utils/sysbuilder/nanoBuilder.cpp, utils/sysbuilder/nanoBuilder.hpp,
643	<	utils/sysbuilder/randomBilayer.cpp, utils/sysbuilder/sysBuild.cpp,
644	<	utils/sysbuilder/sysBuild.ggo, utils/sysbuilder/sysBuild.hpp,
645	<	utils/sysbuilder/MPIobj/placeHolder,
646	<	utils/sysbuilder/obj/placeHolder: Initial revision
1118	>	forceFields/Makefile.in, forceFields/Ni.u3.funcfl,
1119	>	forceFields/Ni.u6.funcfl, forceFields/Pd.VC.funcfl,
1120	>	forceFields/Pd.u6.funcfl, forceFields/Pt.u3.funcfl,
1121	>	forceFields/Pt.u6.funcfl, forceFields/WATER.frc, scripts/cleanSrc,
1122	>	scripts/cvs2cl.pl, scripts/makers, scripts/sfmakedepend,
1123	>	ac-tools/Make.conf.in, ac-tools/aclocal.m4, ac-tools/config.guess,
1124	>	ac-tools/config.sub, ac-tools/configure.in, ac-tools/fortran90.m4,
1125	>	ac-tools/install-sh, ac-tools/shtool, doc/OOPSE.pdf,
1126	>	forceFields/Al.VC.funcfl, forceFields/Au.VC.funcfl,
1127	>	forceFields/Au.u3.funcfl, forceFields/LJFF.frc,
1128	>	forceFields/Ni.VC.funcfl, forceFields/Pd.u3.funcfl,
1129	>	forceFields/Pt.VC.funcfl: Initial revision
1130

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