--- trunk/OOPSE-3.0/configure	2004/09/24 04:16:43	1490
+++ trunk/OOPSE-3.0/configure	2005/02/15 05:05:33	2024
@@ -1,10 +1,11 @@
 #! /bin/sh
 # Guess values for system-dependent variables and create Makefiles.
-# Generated by GNU Autoconf 2.59 for OOPSE 1.0.
+# Generated by GNU Autoconf 2.57 for OOPSE 2.0.
 #
 # Report bugs to <gezelter@nd.edu>.
 #
-# Copyright (C) 2003 Free Software Foundation, Inc.
+# Copyright 1992, 1993, 1994, 1995, 1996, 1998, 1999, 2000, 2001, 2002
+# Free Software Foundation, Inc.
 # This configure script is free software; the Free Software Foundation
 # gives unlimited permission to copy, distribute and modify it.
 ## --------------------- ##
@@ -21,10 +22,9 @@ DUALCASE=1; export DUALCASE # for MKS sh
 elif test -n "${BASH_VERSION+set}" && (set -o posix) >/dev/null 2>&1; then
   set -o posix
 fi
-DUALCASE=1; export DUALCASE # for MKS sh
 
 # Support unset when possible.
-if ( (MAIL=60; unset MAIL) || exit) >/dev/null 2>&1; then
+if (FOO=FOO; unset FOO) >/dev/null 2>&1; then
   as_unset=unset
 else
   as_unset=false
@@ -43,7 +43,7 @@ do
   LC_MEASUREMENT LC_MESSAGES LC_MONETARY LC_NAME LC_NUMERIC LC_PAPER \
   LC_TELEPHONE LC_TIME
 do
-  if (set +x; test -z "`(eval $as_var=C; export $as_var) 2>&1`"); then
+  if (set +x; test -n "`(eval $as_var=C; export $as_var) 2>&1`"); then
     eval $as_var=C; export $as_var
   else
     $as_unset $as_var
@@ -220,17 +220,16 @@ else
 if mkdir -p . 2>/dev/null; then
   as_mkdir_p=:
 else
-  test -d ./-p && rmdir ./-p
   as_mkdir_p=false
 fi
 
 as_executable_p="test -f"
 
 # Sed expression to map a string onto a valid CPP name.
-as_tr_cpp="eval sed 'y%*$as_cr_letters%P$as_cr_LETTERS%;s%[^_$as_cr_alnum]%_%g'"
+as_tr_cpp="sed y%*$as_cr_letters%P$as_cr_LETTERS%;s%[^_$as_cr_alnum]%_%g"
 
 # Sed expression to map a string onto a valid variable name.
-as_tr_sh="eval sed 'y%*+%pp%;s%[^_$as_cr_alnum]%_%g'"
+as_tr_sh="sed y%*+%pp%;s%[^_$as_cr_alnum]%_%g"
 
 
 # IFS
@@ -269,11 +268,11 @@ PACKAGE_VERSION='1.0'
 # Identity of this package.
 PACKAGE_NAME='OOPSE'
 PACKAGE_TARNAME='oopse'
-PACKAGE_VERSION='1.0'
-PACKAGE_STRING='OOPSE 1.0'
+PACKAGE_VERSION='2.0'
+PACKAGE_STRING='OOPSE 2.0'
 PACKAGE_BUGREPORT='gezelter@nd.edu'
 
-ac_unique_file="src/oopse.cpp"
+ac_unique_file="src/applications/oopse/oopse.cpp"
 ac_default_prefix="/usr/local"
 # Factoring default headers for most tests.
 ac_includes_default="\
@@ -312,7 +311,7 @@ ac_subst_vars='SHELL PATH_SEPARATOR PACKAGE_NAME PACKA
 # include <unistd.h>
 #endif"
 
-ac_subst_vars='SHELL PATH_SEPARATOR PACKAGE_NAME PACKAGE_TARNAME PACKAGE_VERSION PACKAGE_STRING PACKAGE_BUGREPORT exec_prefix prefix program_transform_name bindir sbindir libexecdir datadir sysconfdir sharedstatedir localstatedir libdir includedir oldincludedir infodir mandir build_alias host_alias target_alias DEFS ECHO_C ECHO_N ECHO_T LIBS PROGNAME debug build build_cpu build_vendor build_os host host_cpu host_vendor host_os CC CFLAGS LDFLAGS CPPFLAGS ac_ct_CC EXEEXT OBJEXT CXX CXXFLAGS ac_ct_CXX OOPSE_TEMPLATE_FLAGS EXTRA_CC_FLAG F90 F90FLAGS ac_ct_F90 PREPFLAG PREPDEFFLAG F90LIBS F90_FUNC F90_FUNC_ MOD F90_WORK_FILES_ARG MODDIRFLAG F90MODINCSPEC CPP EGREP LIBOBJS INSTALL_PROGRAM INSTALL_SCRIPT INSTALL_DATA LN_S SET_MAKE RANLIB ac_ct_RANLIB YACC LEX LEXLIB LEX_OUTPUT_ROOT AR MPI_LIB_DIR MPI_INC_DIR MPI_F90_INC MPI_LIB MPI_F90_LIB USE_MPI SPRNG_LIB_DIR SPRNG_INC_DIR SPRNG_LIB USE_SPRNG MKL_LIBDIR MKL_LIB MKL_INC HAVE_MKL BATEXT MKINSTALLDIRS OOPSE OOPSE_HOME SUBDIRS FFLAGS LTLIBOBJS'
+ac_subst_vars='SHELL PATH_SEPARATOR PACKAGE_NAME PACKAGE_TARNAME PACKAGE_VERSION PACKAGE_STRING PACKAGE_BUGREPORT exec_prefix prefix program_transform_name bindir sbindir libexecdir datadir sysconfdir sharedstatedir localstatedir libdir includedir oldincludedir infodir mandir build_alias host_alias target_alias DEFS ECHO_C ECHO_N ECHO_T LIBS PROGNAME debug build build_cpu build_vendor build_os host host_cpu host_vendor host_os CC CFLAGS LDFLAGS CPPFLAGS ac_ct_CC EXEEXT OBJEXT CXX CXXFLAGS ac_ct_CXX OOPSE_TEMPLATE_FLAGS EXTRA_CC_FLAG F90 F90FLAGS ac_ct_F90 PREPFLAG PREPDEFFLAG F90LIBS F90_FUNC F90_FUNC_ MOD F90_WORK_FILES_ARG MODDIRFLAG F90MODINCSPEC F90_MODULE_NAMES CPP EGREP LIBOBJS INSTALL_PROGRAM INSTALL_SCRIPT INSTALL_DATA LN_S SET_MAKE RANLIB ac_ct_RANLIB YACC LEX LEXLIB LEX_OUTPUT_ROOT AR PS MPI_LIB_DIR MPI_INC_DIR MPI_F90_INC MPI_LIB MPI_F90_LIB USE_MPI SPRNG_LIB_DIR SPRNG_INC_DIR SPRNG_LIB USE_SPRNG MKL_LIBDIR MKL_LIB MKL_INC HAVE_MKL DOXYGEN DOT DOC enable_dot enable_html_docs enable_latex_docs BATEXT MKINSTALLDIRS OOPSE OOPSE_HOME SUBDIRS FFLAGS LTLIBOBJS'
 ac_subst_files=''
 
 # Initialize some variables set by options.
@@ -671,7 +670,7 @@ for ac_var in bindir sbindir libexecdir datadir syscon
 
 # Be sure to have absolute paths.
 for ac_var in bindir sbindir libexecdir datadir sysconfdir sharedstatedir \
-	      localstatedir libdir includedir oldincludedir infodir mandir
+              localstatedir libdir includedir oldincludedir infodir mandir
 do
   eval ac_val=$`echo $ac_var`
   case $ac_val in
@@ -711,10 +710,10 @@ $as_expr X"$0" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
   # Try the directory containing this script, then its parent.
   ac_confdir=`(dirname "$0") 2>/dev/null ||
 $as_expr X"$0" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
-	 X"$0" : 'X\(//\)[^/]' \| \
-	 X"$0" : 'X\(//\)$' \| \
-	 X"$0" : 'X\(/\)' \| \
-	 .     : '\(.\)' 2>/dev/null ||
+         X"$0" : 'X\(//\)[^/]' \| \
+         X"$0" : 'X\(//\)$' \| \
+         X"$0" : 'X\(/\)' \| \
+         .     : '\(.\)' 2>/dev/null ||
 echo X"$0" |
     sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{ s//\1/; q; }
   	  /^X\(\/\/\)[^/].*/{ s//\1/; q; }
@@ -797,7 +796,7 @@ if test "$ac_init_help" = "long"; then
   # Omit some internal or obsolete options to make the list less imposing.
   # This message is too long to be a string in the A/UX 3.1 sh.
   cat <<_ACEOF
-\`configure' configures OOPSE 1.0 to adapt to many kinds of systems.
+\`configure' configures OOPSE 2.0 to adapt to many kinds of systems.
 
 Usage: $0 [OPTION]... [VAR=VALUE]...
 
@@ -822,9 +821,9 @@ Installation directories:
   cat <<_ACEOF
 Installation directories:
   --prefix=PREFIX         install architecture-independent files in PREFIX
-			  [$ac_default_prefix]
+                          [$ac_default_prefix]
   --exec-prefix=EPREFIX   install architecture-dependent files in EPREFIX
-			  [PREFIX]
+                          [PREFIX]
 
 By default, \`make install' will install all the files in
 \`$ac_default_prefix/bin', \`$ac_default_prefix/lib' etc.  You can specify
@@ -858,7 +857,7 @@ if test -n "$ac_init_help"; then
 
 if test -n "$ac_init_help"; then
   case $ac_init_help in
-     short | recursive ) echo "Configuration of OOPSE 1.0:";;
+     short | recursive ) echo "Configuration of OOPSE 2.0:";;
    esac
   cat <<\_ACEOF
 
@@ -866,6 +865,10 @@ Optional Features:
   --disable-FEATURE       do not include FEATURE (same as --enable-FEATURE=no)
   --enable-FEATURE[=ARG]  include FEATURE [ARG=yes]
   --enable-debug          Compile OOPSE in debug mode
+  --enable-doxygen        enable documentation generation with doxygen (auto)
+  --enable-dot            use 'dot' to generate graphs in doxygen (auto)
+  --enable-html-docs      enable HTML generation with doxygen (yes)
+  --enable-latex-docs     enable LaTeX documentation generation with doxygen (no)
   --enable-oopse-home=DIR      define oopse home dir PREFIX/oopse
 
 Optional Packages:
@@ -926,45 +929,12 @@ esac
     ac_srcdir=$ac_top_builddir$srcdir$ac_dir_suffix
     ac_top_srcdir=$ac_top_builddir$srcdir ;;
 esac
-
-# Do not use `cd foo && pwd` to compute absolute paths, because
-# the directories may not exist.
-case `pwd` in
-.) ac_abs_builddir="$ac_dir";;
-*)
-  case "$ac_dir" in
-  .) ac_abs_builddir=`pwd`;;
-  [\\/]* | ?:[\\/]* ) ac_abs_builddir="$ac_dir";;
-  *) ac_abs_builddir=`pwd`/"$ac_dir";;
-  esac;;
-esac
-case $ac_abs_builddir in
-.) ac_abs_top_builddir=${ac_top_builddir}.;;
-*)
-  case ${ac_top_builddir}. in
-  .) ac_abs_top_builddir=$ac_abs_builddir;;
-  [\\/]* | ?:[\\/]* ) ac_abs_top_builddir=${ac_top_builddir}.;;
-  *) ac_abs_top_builddir=$ac_abs_builddir/${ac_top_builddir}.;;
-  esac;;
-esac
-case $ac_abs_builddir in
-.) ac_abs_srcdir=$ac_srcdir;;
-*)
-  case $ac_srcdir in
-  .) ac_abs_srcdir=$ac_abs_builddir;;
-  [\\/]* | ?:[\\/]* ) ac_abs_srcdir=$ac_srcdir;;
-  *) ac_abs_srcdir=$ac_abs_builddir/$ac_srcdir;;
-  esac;;
-esac
-case $ac_abs_builddir in
-.) ac_abs_top_srcdir=$ac_top_srcdir;;
-*)
-  case $ac_top_srcdir in
-  .) ac_abs_top_srcdir=$ac_abs_builddir;;
-  [\\/]* | ?:[\\/]* ) ac_abs_top_srcdir=$ac_top_srcdir;;
-  *) ac_abs_top_srcdir=$ac_abs_builddir/$ac_top_srcdir;;
-  esac;;
-esac
+# Don't blindly perform a `cd "$ac_dir"/$ac_foo && pwd` since $ac_foo can be
+# absolute.
+ac_abs_builddir=`cd "$ac_dir" && cd $ac_builddir && pwd`
+ac_abs_top_builddir=`cd "$ac_dir" && cd ${ac_top_builddir}. && pwd`
+ac_abs_srcdir=`cd "$ac_dir" && cd $ac_srcdir && pwd`
+ac_abs_top_srcdir=`cd "$ac_dir" && cd $ac_top_srcdir && pwd`
 
     cd $ac_dir
     # Check for guested configure; otherwise get Cygnus style configure.
@@ -975,7 +945,7 @@ esac
       echo
       $SHELL $ac_srcdir/configure  --help=recursive
     elif test -f $ac_srcdir/configure.ac ||
-	   test -f $ac_srcdir/configure.in; then
+           test -f $ac_srcdir/configure.in; then
       echo
       $ac_configure --help
     else
@@ -988,10 +958,11 @@ OOPSE configure 1.0
 test -n "$ac_init_help" && exit 0
 if $ac_init_version; then
   cat <<\_ACEOF
-OOPSE configure 1.0
-generated by GNU Autoconf 2.59
+OOPSE configure 2.0
+generated by GNU Autoconf 2.57
 
-Copyright (C) 2003 Free Software Foundation, Inc.
+Copyright 1992, 1993, 1994, 1995, 1996, 1998, 1999, 2000, 2001, 2002
+Free Software Foundation, Inc.
 This configure script is free software; the Free Software Foundation
 gives unlimited permission to copy, distribute and modify it.
 _ACEOF
@@ -1002,8 +973,8 @@ It was created by OOPSE $as_me 1.0, which was
 This file contains any messages produced by compilers while
 running configure, to aid debugging if configure makes a mistake.
 
-It was created by OOPSE $as_me 1.0, which was
-generated by GNU Autoconf 2.59.  Invocation command line was
+It was created by OOPSE $as_me 2.0, which was
+generated by GNU Autoconf 2.57.  Invocation command line was
 
   $ $0 $@
 
@@ -1080,19 +1051,19 @@ do
     2)
       ac_configure_args1="$ac_configure_args1 '$ac_arg'"
       if test $ac_must_keep_next = true; then
-	ac_must_keep_next=false # Got value, back to normal.
+        ac_must_keep_next=false # Got value, back to normal.
       else
-	case $ac_arg in
-	  *=* | --config-cache | -C | -disable-* | --disable-* \
-	  | -enable-* | --enable-* | -gas | --g* | -nfp | --nf* \
-	  | -q | -quiet | --q* | -silent | --sil* | -v | -verb* \
-	  | -with-* | --with-* | -without-* | --without-* | --x)
-	    case "$ac_configure_args0 " in
-	      "$ac_configure_args1"*" '$ac_arg' "* ) continue ;;
-	    esac
-	    ;;
-	  -* ) ac_must_keep_next=true ;;
-	esac
+        case $ac_arg in
+          *=* | --config-cache | -C | -disable-* | --disable-* \
+          | -enable-* | --enable-* | -gas | --g* | -nfp | --nf* \
+          | -q | -quiet | --q* | -silent | --sil* | -v | -verb* \
+          | -with-* | --with-* | -without-* | --without-* | --x)
+            case "$ac_configure_args0 " in
+              "$ac_configure_args1"*" '$ac_arg' "* ) continue ;;
+            esac
+            ;;
+          -* ) ac_must_keep_next=true ;;
+        esac
       fi
       ac_configure_args="$ac_configure_args$ac_sep'$ac_arg'"
       # Get rid of the leading space.
@@ -1126,12 +1097,12 @@ _ASBOX
     case `(ac_space='"'"' '"'"'; set | grep ac_space) 2>&1` in
     *ac_space=\ *)
       sed -n \
-	"s/'"'"'/'"'"'\\\\'"'"''"'"'/g;
-	  s/^\\([_$as_cr_alnum]*_cv_[_$as_cr_alnum]*\\)=\\(.*\\)/\\1='"'"'\\2'"'"'/p"
+        "s/'"'"'/'"'"'\\\\'"'"''"'"'/g;
+    	  s/^\\([_$as_cr_alnum]*_cv_[_$as_cr_alnum]*\\)=\\(.*\\)/\\1='"'"'\\2'"'"'/p"
       ;;
     *)
       sed -n \
-	"s/^\\([_$as_cr_alnum]*_cv_[_$as_cr_alnum]*\\)=\\(.*\\)/\\1=\\2/p"
+        "s/^\\([_$as_cr_alnum]*_cv_[_$as_cr_alnum]*\\)=\\(.*\\)/\\1=\\2/p"
       ;;
     esac;
 }
@@ -1160,7 +1131,7 @@ _ASBOX
       for ac_var in $ac_subst_files
       do
 	eval ac_val=$`echo $ac_var`
-	echo "$ac_var='"'"'$ac_val'"'"'"
+        echo "$ac_var='"'"'$ac_val'"'"'"
       done | sort
       echo
     fi
@@ -1179,7 +1150,7 @@ _ASBOX
       echo "$as_me: caught signal $ac_signal"
     echo "$as_me: exit $exit_status"
   } >&5
-  rm -f core *.core &&
+  rm -f core core.* *.core &&
   rm -rf conftest* confdefs* conf$$* $ac_clean_files &&
     exit $exit_status
      ' 0
@@ -1259,7 +1230,7 @@ for ac_var in `(set) 2>&1 |
 # value.
 ac_cache_corrupted=false
 for ac_var in `(set) 2>&1 |
-	       sed -n 's/^ac_env_\([a-zA-Z_0-9]*\)_set=.*/\1/p'`; do
+               sed -n 's/^ac_env_\([a-zA-Z_0-9]*\)_set=.*/\1/p'`; do
   eval ac_old_set=\$ac_cv_env_${ac_var}_set
   eval ac_new_set=\$ac_env_${ac_var}_set
   eval ac_old_val="\$ac_cv_env_${ac_var}_value"
@@ -1276,13 +1247,13 @@ echo "$as_me: error: \`$ac_var' was not set in the pre
     ,);;
     *)
       if test "x$ac_old_val" != "x$ac_new_val"; then
-	{ echo "$as_me:$LINENO: error: \`$ac_var' has changed since the previous run:" >&5
+        { echo "$as_me:$LINENO: error: \`$ac_var' has changed since the previous run:" >&5
 echo "$as_me: error: \`$ac_var' has changed since the previous run:" >&2;}
-	{ echo "$as_me:$LINENO:   former value:  $ac_old_val" >&5
+        { echo "$as_me:$LINENO:   former value:  $ac_old_val" >&5
 echo "$as_me:   former value:  $ac_old_val" >&2;}
-	{ echo "$as_me:$LINENO:   current value: $ac_new_val" >&5
+        { echo "$as_me:$LINENO:   current value: $ac_new_val" >&5
 echo "$as_me:   current value: $ac_new_val" >&2;}
-	ac_cache_corrupted=:
+        ac_cache_corrupted=:
       fi;;
   esac
   # Pass precious variables to config.status.
@@ -1813,6 +1784,13 @@ ac_configure="$SHELL $ac_aux_dir/configure" # This sho
 # $SHELLVAR to the Fortran 95 mangled name.  If the SHELLVAR
 # argument is not supplied, it defaults to NAME.
 # AC_F95_FUNC
+
+# AC_F90_MODULE_NAMES
+# -------------------
+#
+# Figure out how the Fortran 90 compiler constructs module file names
+#
+ # AC_F90_MODULE_NAMES
 
 
 
@@ -1868,6 +1846,10 @@ ac_configure="$SHELL $ac_aux_dir/configure" # This sho
 
 
 
+
+
+
+
 # set program name
 PROGNAME="oopse"
 
@@ -1947,6 +1929,8 @@ ac_ext=c
 
 
 
+
+
 ac_ext=c
 ac_cpp='$CPP $CPPFLAGS'
 ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
@@ -2066,6 +2050,7 @@ cat >conftest.$ac_ext <<_ACEOF
   (exit $ac_status); }
 
 cat >conftest.$ac_ext <<_ACEOF
+#line $LINENO "configure"
 /* confdefs.h.  */
 _ACEOF
 cat confdefs.h >>conftest.$ac_ext
@@ -2085,8 +2070,8 @@ echo "$as_me:$LINENO: checking for C compiler default 
 # Try to create an executable without -o first, disregard a.out.
 # It will help us diagnose broken compilers, and finding out an intuition
 # of exeext.
-echo "$as_me:$LINENO: checking for C compiler default output file name" >&5
-echo $ECHO_N "checking for C compiler default output file name... $ECHO_C" >&6
+echo "$as_me:$LINENO: checking for C compiler default output" >&5
+echo $ECHO_N "checking for C compiler default output... $ECHO_C" >&6
 ac_link_default=`echo "$ac_link" | sed 's/ -o *conftest[^ ]*//'`
 if { (eval echo "$as_me:$LINENO: \"$ac_link_default\"") >&5
   (eval $ac_link_default) 2>&5
@@ -2106,23 +2091,23 @@ do
   test -f "$ac_file" || continue
   case $ac_file in
     *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg | *.o | *.obj )
-	;;
+        ;;
     conftest.$ac_ext )
-	# This is the source file.
-	;;
+        # This is the source file.
+        ;;
     [ab].out )
-	# We found the default executable, but exeext='' is most
-	# certainly right.
-	break;;
+        # We found the default executable, but exeext='' is most
+        # certainly right.
+        break;;
     *.* )
-	ac_cv_exeext=`expr "$ac_file" : '[^.]*\(\..*\)'`
-	# FIXME: I believe we export ac_cv_exeext for Libtool,
-	# but it would be cool to find out if it's true.  Does anybody
-	# maintain Libtool? --akim.
-	export ac_cv_exeext
-	break;;
+        ac_cv_exeext=`expr "$ac_file" : '[^.]*\(\..*\)'`
+        # FIXME: I believe we export ac_cv_exeext for Libtool,
+        # but it would be cool to find out if it's true.  Does anybody
+        # maintain Libtool? --akim.
+        export ac_cv_exeext
+        break;;
     * )
-	break;;
+        break;;
   esac
 done
 else
@@ -2196,8 +2181,8 @@ for ac_file in conftest.exe conftest conftest.*; do
   case $ac_file in
     *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg | *.o | *.obj ) ;;
     *.* ) ac_cv_exeext=`expr "$ac_file" : '[^.]*\(\..*\)'`
-	  export ac_cv_exeext
-	  break;;
+          export ac_cv_exeext
+          break;;
     * ) break;;
   esac
 done
@@ -2222,6 +2207,7 @@ else
   echo $ECHO_N "(cached) $ECHO_C" >&6
 else
   cat >conftest.$ac_ext <<_ACEOF
+#line $LINENO "configure"
 /* confdefs.h.  */
 _ACEOF
 cat confdefs.h >>conftest.$ac_ext
@@ -2272,6 +2258,7 @@ else
   echo $ECHO_N "(cached) $ECHO_C" >&6
 else
   cat >conftest.$ac_ext <<_ACEOF
+#line $LINENO "configure"
 /* confdefs.h.  */
 _ACEOF
 cat confdefs.h >>conftest.$ac_ext
@@ -2291,25 +2278,15 @@ if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
 _ACEOF
 rm -f conftest.$ac_objext
 if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-  (eval $ac_compile) 2>conftest.er1
+  (eval $ac_compile) 2>&5
   ac_status=$?
-  grep -v '^ *+' conftest.er1 >conftest.err
-  rm -f conftest.er1
-  cat conftest.err >&5
   echo "$as_me:$LINENO: \$? = $ac_status" >&5
   (exit $ac_status); } &&
-	 { ac_try='test -z "$ac_c_werror_flag"
-			 || test ! -s conftest.err'
+         { ac_try='test -s conftest.$ac_objext'
   { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
   (eval $ac_try) 2>&5
   ac_status=$?
   echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; } &&
-	 { ac_try='test -s conftest.$ac_objext'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
   (exit $ac_status); }; }; then
   ac_compiler_gnu=yes
 else
@@ -2318,7 +2295,7 @@ rm -f conftest.err conftest.$ac_objext conftest.$ac_ex
 
 ac_compiler_gnu=no
 fi
-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
+rm -f conftest.$ac_objext conftest.$ac_ext
 ac_cv_c_compiler_gnu=$ac_compiler_gnu
 
 fi
@@ -2334,6 +2311,7 @@ else
   echo $ECHO_N "(cached) $ECHO_C" >&6
 else
   cat >conftest.$ac_ext <<_ACEOF
+#line $LINENO "configure"
 /* confdefs.h.  */
 _ACEOF
 cat confdefs.h >>conftest.$ac_ext
@@ -2350,25 +2328,15 @@ if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
 _ACEOF
 rm -f conftest.$ac_objext
 if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-  (eval $ac_compile) 2>conftest.er1
+  (eval $ac_compile) 2>&5
   ac_status=$?
-  grep -v '^ *+' conftest.er1 >conftest.err
-  rm -f conftest.er1
-  cat conftest.err >&5
   echo "$as_me:$LINENO: \$? = $ac_status" >&5
   (exit $ac_status); } &&
-	 { ac_try='test -z "$ac_c_werror_flag"
-			 || test ! -s conftest.err'
+         { ac_try='test -s conftest.$ac_objext'
   { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
   (eval $ac_try) 2>&5
   ac_status=$?
   echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; } &&
-	 { ac_try='test -s conftest.$ac_objext'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
   (exit $ac_status); }; }; then
   ac_cv_prog_cc_g=yes
 else
@@ -2377,7 +2345,7 @@ rm -f conftest.err conftest.$ac_objext conftest.$ac_ex
 
 ac_cv_prog_cc_g=no
 fi
-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
+rm -f conftest.$ac_objext conftest.$ac_ext
 fi
 echo "$as_me:$LINENO: result: $ac_cv_prog_cc_g" >&5
 echo "${ECHO_T}$ac_cv_prog_cc_g" >&6
@@ -2404,6 +2372,7 @@ cat >conftest.$ac_ext <<_ACEOF
   ac_cv_prog_cc_stdc=no
 ac_save_CC=$CC
 cat >conftest.$ac_ext <<_ACEOF
+#line $LINENO "configure"
 /* confdefs.h.  */
 _ACEOF
 cat confdefs.h >>conftest.$ac_ext
@@ -2431,16 +2400,6 @@ static char *f (char * (*g) (char **, int), char **p, 
   va_end (v);
   return s;
 }
-
-/* OSF 4.0 Compaq cc is some sort of almost-ANSI by default.  It has
-   function prototypes and stuff, but not '\xHH' hex character constants.
-   These don't provoke an error unfortunately, instead are silently treated
-   as 'x'.  The following induces an error, until -std1 is added to get
-   proper ANSI mode.  Curiously '\x00'!='x' always comes out true, for an
-   array size at least.  It's necessary to write '\x00'==0 to get something
-   that's true only with -std1.  */
-int osf4_cc_array ['\x00' == 0 ? 1 : -1];
-
 int test (int i, double x);
 struct s1 {int (*f) (int a);};
 struct s2 {int (*f) (double a);};
@@ -2467,25 +2426,15 @@ if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
   CC="$ac_save_CC $ac_arg"
   rm -f conftest.$ac_objext
 if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-  (eval $ac_compile) 2>conftest.er1
+  (eval $ac_compile) 2>&5
   ac_status=$?
-  grep -v '^ *+' conftest.er1 >conftest.err
-  rm -f conftest.er1
-  cat conftest.err >&5
   echo "$as_me:$LINENO: \$? = $ac_status" >&5
   (exit $ac_status); } &&
-	 { ac_try='test -z "$ac_c_werror_flag"
-			 || test ! -s conftest.err'
+         { ac_try='test -s conftest.$ac_objext'
   { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
   (eval $ac_try) 2>&5
   ac_status=$?
   echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; } &&
-	 { ac_try='test -s conftest.$ac_objext'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
   (exit $ac_status); }; }; then
   ac_cv_prog_cc_stdc=$ac_arg
 break
@@ -2494,7 +2443,7 @@ rm -f conftest.err conftest.$ac_objext
 sed 's/^/| /' conftest.$ac_ext >&5
 
 fi
-rm -f conftest.err conftest.$ac_objext
+rm -f conftest.$ac_objext
 done
 rm -f conftest.$ac_ext conftest.$ac_objext
 CC=$ac_save_CC
@@ -2522,28 +2471,19 @@ if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
 _ACEOF
 rm -f conftest.$ac_objext
 if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-  (eval $ac_compile) 2>conftest.er1
+  (eval $ac_compile) 2>&5
   ac_status=$?
-  grep -v '^ *+' conftest.er1 >conftest.err
-  rm -f conftest.er1
-  cat conftest.err >&5
   echo "$as_me:$LINENO: \$? = $ac_status" >&5
   (exit $ac_status); } &&
-	 { ac_try='test -z "$ac_c_werror_flag"
-			 || test ! -s conftest.err'
+         { ac_try='test -s conftest.$ac_objext'
   { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
   (eval $ac_try) 2>&5
   ac_status=$?
   echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; } &&
-	 { ac_try='test -s conftest.$ac_objext'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
   (exit $ac_status); }; }; then
   for ac_declaration in \
-   '' \
+   ''\
+   '#include <stdlib.h>' \
    'extern "C" void std::exit (int) throw (); using std::exit;' \
    'extern "C" void std::exit (int); using std::exit;' \
    'extern "C" void exit (int) throw ();' \
@@ -2551,13 +2491,14 @@ do
    'void exit (int);'
 do
   cat >conftest.$ac_ext <<_ACEOF
+#line $LINENO "configure"
 /* confdefs.h.  */
 _ACEOF
 cat confdefs.h >>conftest.$ac_ext
 cat >>conftest.$ac_ext <<_ACEOF
 /* end confdefs.h.  */
-$ac_declaration
 #include <stdlib.h>
+$ac_declaration
 int
 main ()
 {
@@ -2568,25 +2509,15 @@ if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
 _ACEOF
 rm -f conftest.$ac_objext
 if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-  (eval $ac_compile) 2>conftest.er1
+  (eval $ac_compile) 2>&5
   ac_status=$?
-  grep -v '^ *+' conftest.er1 >conftest.err
-  rm -f conftest.er1
-  cat conftest.err >&5
   echo "$as_me:$LINENO: \$? = $ac_status" >&5
   (exit $ac_status); } &&
-	 { ac_try='test -z "$ac_c_werror_flag"
-			 || test ! -s conftest.err'
+         { ac_try='test -s conftest.$ac_objext'
   { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
   (eval $ac_try) 2>&5
   ac_status=$?
   echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; } &&
-	 { ac_try='test -s conftest.$ac_objext'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
   (exit $ac_status); }; }; then
   :
 else
@@ -2595,8 +2526,9 @@ rm -f conftest.err conftest.$ac_objext conftest.$ac_ex
 
 continue
 fi
-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
+rm -f conftest.$ac_objext conftest.$ac_ext
   cat >conftest.$ac_ext <<_ACEOF
+#line $LINENO "configure"
 /* confdefs.h.  */
 _ACEOF
 cat confdefs.h >>conftest.$ac_ext
@@ -2613,25 +2545,15 @@ if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
 _ACEOF
 rm -f conftest.$ac_objext
 if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-  (eval $ac_compile) 2>conftest.er1
+  (eval $ac_compile) 2>&5
   ac_status=$?
-  grep -v '^ *+' conftest.er1 >conftest.err
-  rm -f conftest.er1
-  cat conftest.err >&5
   echo "$as_me:$LINENO: \$? = $ac_status" >&5
   (exit $ac_status); } &&
-	 { ac_try='test -z "$ac_c_werror_flag"
-			 || test ! -s conftest.err'
+         { ac_try='test -s conftest.$ac_objext'
   { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
   (eval $ac_try) 2>&5
   ac_status=$?
   echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; } &&
-	 { ac_try='test -s conftest.$ac_objext'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
   (exit $ac_status); }; }; then
   break
 else
@@ -2639,7 +2561,7 @@ rm -f conftest.err conftest.$ac_objext conftest.$ac_ex
 sed 's/^/| /' conftest.$ac_ext >&5
 
 fi
-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
+rm -f conftest.$ac_objext conftest.$ac_ext
 done
 rm -f conftest*
 if test -n "$ac_declaration"; then
@@ -2653,7 +2575,7 @@ rm -f conftest.err conftest.$ac_objext conftest.$ac_ex
 sed 's/^/| /' conftest.$ac_ext >&5
 
 fi
-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
+rm -f conftest.$ac_objext conftest.$ac_ext
 ac_ext=c
 ac_cpp='$CPP $CPPFLAGS'
 ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
@@ -2780,6 +2702,7 @@ else
   echo $ECHO_N "(cached) $ECHO_C" >&6
 else
   cat >conftest.$ac_ext <<_ACEOF
+#line $LINENO "configure"
 /* confdefs.h.  */
 _ACEOF
 cat confdefs.h >>conftest.$ac_ext
@@ -2799,21 +2722,11 @@ if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
 _ACEOF
 rm -f conftest.$ac_objext
 if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-  (eval $ac_compile) 2>conftest.er1
+  (eval $ac_compile) 2>&5
   ac_status=$?
-  grep -v '^ *+' conftest.er1 >conftest.err
-  rm -f conftest.er1
-  cat conftest.err >&5
   echo "$as_me:$LINENO: \$? = $ac_status" >&5
   (exit $ac_status); } &&
-	 { ac_try='test -z "$ac_cxx_werror_flag"
-			 || test ! -s conftest.err'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; } &&
-	 { ac_try='test -s conftest.$ac_objext'
+         { ac_try='test -s conftest.$ac_objext'
   { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
   (eval $ac_try) 2>&5
   ac_status=$?
@@ -2826,7 +2739,7 @@ rm -f conftest.err conftest.$ac_objext conftest.$ac_ex
 
 ac_compiler_gnu=no
 fi
-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
+rm -f conftest.$ac_objext conftest.$ac_ext
 ac_cv_cxx_compiler_gnu=$ac_compiler_gnu
 
 fi
@@ -2842,6 +2755,7 @@ else
   echo $ECHO_N "(cached) $ECHO_C" >&6
 else
   cat >conftest.$ac_ext <<_ACEOF
+#line $LINENO "configure"
 /* confdefs.h.  */
 _ACEOF
 cat confdefs.h >>conftest.$ac_ext
@@ -2858,25 +2772,15 @@ if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
 _ACEOF
 rm -f conftest.$ac_objext
 if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-  (eval $ac_compile) 2>conftest.er1
+  (eval $ac_compile) 2>&5
   ac_status=$?
-  grep -v '^ *+' conftest.er1 >conftest.err
-  rm -f conftest.er1
-  cat conftest.err >&5
   echo "$as_me:$LINENO: \$? = $ac_status" >&5
   (exit $ac_status); } &&
-	 { ac_try='test -z "$ac_cxx_werror_flag"
-			 || test ! -s conftest.err'
+         { ac_try='test -s conftest.$ac_objext'
   { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
   (eval $ac_try) 2>&5
   ac_status=$?
   echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; } &&
-	 { ac_try='test -s conftest.$ac_objext'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
   (exit $ac_status); }; }; then
   ac_cv_prog_cxx_g=yes
 else
@@ -2885,7 +2789,7 @@ rm -f conftest.err conftest.$ac_objext conftest.$ac_ex
 
 ac_cv_prog_cxx_g=no
 fi
-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
+rm -f conftest.$ac_objext conftest.$ac_ext
 fi
 echo "$as_me:$LINENO: result: $ac_cv_prog_cxx_g" >&5
 echo "${ECHO_T}$ac_cv_prog_cxx_g" >&6
@@ -2905,7 +2809,8 @@ for ac_declaration in \
   fi
 fi
 for ac_declaration in \
-   '' \
+   ''\
+   '#include <stdlib.h>' \
    'extern "C" void std::exit (int) throw (); using std::exit;' \
    'extern "C" void std::exit (int); using std::exit;' \
    'extern "C" void exit (int) throw ();' \
@@ -2913,13 +2818,14 @@ do
    'void exit (int);'
 do
   cat >conftest.$ac_ext <<_ACEOF
+#line $LINENO "configure"
 /* confdefs.h.  */
 _ACEOF
 cat confdefs.h >>conftest.$ac_ext
 cat >>conftest.$ac_ext <<_ACEOF
 /* end confdefs.h.  */
-$ac_declaration
 #include <stdlib.h>
+$ac_declaration
 int
 main ()
 {
@@ -2930,25 +2836,15 @@ if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
 _ACEOF
 rm -f conftest.$ac_objext
 if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-  (eval $ac_compile) 2>conftest.er1
+  (eval $ac_compile) 2>&5
   ac_status=$?
-  grep -v '^ *+' conftest.er1 >conftest.err
-  rm -f conftest.er1
-  cat conftest.err >&5
   echo "$as_me:$LINENO: \$? = $ac_status" >&5
   (exit $ac_status); } &&
-	 { ac_try='test -z "$ac_cxx_werror_flag"
-			 || test ! -s conftest.err'
+         { ac_try='test -s conftest.$ac_objext'
   { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
   (eval $ac_try) 2>&5
   ac_status=$?
   echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; } &&
-	 { ac_try='test -s conftest.$ac_objext'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
   (exit $ac_status); }; }; then
   :
 else
@@ -2957,8 +2853,9 @@ rm -f conftest.err conftest.$ac_objext conftest.$ac_ex
 
 continue
 fi
-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
+rm -f conftest.$ac_objext conftest.$ac_ext
   cat >conftest.$ac_ext <<_ACEOF
+#line $LINENO "configure"
 /* confdefs.h.  */
 _ACEOF
 cat confdefs.h >>conftest.$ac_ext
@@ -2975,25 +2872,15 @@ if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
 _ACEOF
 rm -f conftest.$ac_objext
 if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-  (eval $ac_compile) 2>conftest.er1
+  (eval $ac_compile) 2>&5
   ac_status=$?
-  grep -v '^ *+' conftest.er1 >conftest.err
-  rm -f conftest.er1
-  cat conftest.err >&5
   echo "$as_me:$LINENO: \$? = $ac_status" >&5
   (exit $ac_status); } &&
-	 { ac_try='test -z "$ac_cxx_werror_flag"
-			 || test ! -s conftest.err'
+         { ac_try='test -s conftest.$ac_objext'
   { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
   (eval $ac_try) 2>&5
   ac_status=$?
   echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; } &&
-	 { ac_try='test -s conftest.$ac_objext'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
   (exit $ac_status); }; }; then
   break
 else
@@ -3001,7 +2888,7 @@ rm -f conftest.err conftest.$ac_objext conftest.$ac_ex
 sed 's/^/| /' conftest.$ac_ext >&5
 
 fi
-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
+rm -f conftest.$ac_objext conftest.$ac_ext
 done
 rm -f conftest*
 if test -n "$ac_declaration"; then
@@ -3186,25 +3073,15 @@ if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
 _ACEOF
 rm -f conftest.$ac_objext
 if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-  (eval $ac_compile) 2>conftest.er1
+  (eval $ac_compile) 2>&5
   ac_status=$?
-  grep -v '^ *+' conftest.er1 >conftest.err
-  rm -f conftest.er1
-  cat conftest.err >&5
   echo "$as_me:$LINENO: \$? = $ac_status" >&5
   (exit $ac_status); } &&
-	 { ac_try='test -z "$ac_f90_werror_flag"
-			 || test ! -s conftest.err'
+         { ac_try='test -s conftest.$ac_objext'
   { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
   (eval $ac_try) 2>&5
   ac_status=$?
   echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; } &&
-	 { ac_try='test -s conftest.$ac_objext'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
   (exit $ac_status); }; }; then
   ac_compiler_gnu=yes
 else
@@ -3213,7 +3090,7 @@ rm -f conftest.err conftest.$ac_objext conftest.$ac_ex
 
 ac_compiler_gnu=no
 fi
-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
+rm -f conftest.$ac_objext conftest.$ac_ext
 ac_cv_f90_compiler_gnu=$ac_compiler_gnu
 
 fi
@@ -3287,25 +3164,15 @@ if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
 _ACEOF
 rm -f conftest.$ac_objext
 if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-  (eval $ac_compile) 2>conftest.er1
+  (eval $ac_compile) 2>&5
   ac_status=$?
-  grep -v '^ *+' conftest.er1 >conftest.err
-  rm -f conftest.er1
-  cat conftest.err >&5
   echo "$as_me:$LINENO: \$? = $ac_status" >&5
   (exit $ac_status); } &&
-	 { ac_try='test -z "$ac_f90_werror_flag"
-			 || test ! -s conftest.err'
+         { ac_try='test -s conftest.$ac_objext'
   { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
   (eval $ac_try) 2>&5
   ac_status=$?
   echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; } &&
-	 { ac_try='test -s conftest.$ac_objext'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
   (exit $ac_status); }; }; then
   prepflagworks=1
 else
@@ -3314,7 +3181,7 @@ rm -f conftest.err conftest.$ac_objext conftest.$ac_ex
 
 prepflagworks=0
 fi
-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
+rm -f conftest.$ac_objext conftest.$ac_ext
 
   F90FLAGS=$ac_save_F90FLAGS
   ac_ext=$ac_save_ext
@@ -3402,25 +3269,15 @@ if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
 _ACEOF
 rm -f conftest.$ac_objext
 if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-  (eval $ac_compile) 2>conftest.er1
+  (eval $ac_compile) 2>&5
   ac_status=$?
-  grep -v '^ *+' conftest.er1 >conftest.err
-  rm -f conftest.er1
-  cat conftest.err >&5
   echo "$as_me:$LINENO: \$? = $ac_status" >&5
   (exit $ac_status); } &&
-	 { ac_try='test -z "$ac_f90_werror_flag"
-			 || test ! -s conftest.err'
+         { ac_try='test -s conftest.$ac_objext'
   { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
   (eval $ac_try) 2>&5
   ac_status=$?
   echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; } &&
-	 { ac_try='test -s conftest.$ac_objext'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
   (exit $ac_status); }; }; then
   prepdefflagworks=1
 else
@@ -3429,7 +3286,7 @@ rm -f conftest.err conftest.$ac_objext conftest.$ac_ex
 
 prepdefflagworks=0
 fi
-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
+rm -f conftest.$ac_objext conftest.$ac_ext
 
   F90FLAGS=$ac_save_F90FLAGS
   ac_ext=$ac_save_ext
@@ -3481,21 +3338,11 @@ if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
 _ACEOF
 rm -f conftest.$ac_objext
 if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-  (eval $ac_compile) 2>conftest.er1
+  (eval $ac_compile) 2>&5
   ac_status=$?
-  grep -v '^ *+' conftest.er1 >conftest.err
-  rm -f conftest.er1
-  cat conftest.err >&5
   echo "$as_me:$LINENO: \$? = $ac_status" >&5
   (exit $ac_status); } &&
-	 { ac_try='test -z "$ac_f90_werror_flag"
-			 || test ! -s conftest.err'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; } &&
-	 { ac_try='test -s conftest.$ac_objext'
+         { ac_try='test -s conftest.$ac_objext'
   { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
   (eval $ac_try) 2>&5
   ac_status=$?
@@ -3525,7 +3372,7 @@ F90FLAGS="$F90FLAGS $ac_verb"
 ac_save_F90FLAGS=$F90FLAGS
 F90FLAGS="$F90FLAGS $ac_verb"
 
-(eval echo $as_me:3528: \"$ac_link\") >&5
+(eval echo $as_me:3375: \"$ac_link\") >&5
 ac_f90_v_output=`eval $ac_link 5>&1 2>&1 | grep -v 'Driving:'`
 echo "$ac_f90_v_output" >&5
 F90FLAGS=$ac_save_F90FLAGS
@@ -3567,7 +3414,7 @@ rm -f conftest.err conftest.$ac_objext conftest.$ac_ex
 { echo "$as_me:$LINENO: WARNING: compilation failed" >&5
 echo "$as_me: WARNING: compilation failed" >&2;}
 fi
-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
+rm -f conftest.$ac_objext conftest.$ac_ext
 
 fi
 echo "$as_me:$LINENO: result: $ac_cv_prog_f90_v" >&5
@@ -3602,7 +3449,7 @@ F90FLAGS="$F90FLAGS $ac_cv_prog_f90_v"
 ac_save_F90FLAGS=$F90FLAGS
 F90FLAGS="$F90FLAGS $ac_cv_prog_f90_v"
 
-(eval echo $as_me:3605: \"$ac_link\") >&5
+(eval echo $as_me:3452: \"$ac_link\") >&5
 ac_f90_v_output=`eval $ac_link 5>&1 2>&1 | grep -v 'Driving:'`
 echo "$ac_f90_v_output" >&5
 F90FLAGS=$ac_save_F90FLAGS
@@ -3784,25 +3631,15 @@ if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
 _ACEOF
 rm -f conftest.$ac_objext
 if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-  (eval $ac_compile) 2>conftest.er1
+  (eval $ac_compile) 2>&5
   ac_status=$?
-  grep -v '^ *+' conftest.er1 >conftest.err
-  rm -f conftest.er1
-  cat conftest.err >&5
   echo "$as_me:$LINENO: \$? = $ac_status" >&5
   (exit $ac_status); } &&
-	 { ac_try='test -z "$ac_f90_werror_flag"
-			 || test ! -s conftest.err'
+         { ac_try='test -s conftest.$ac_objext'
   { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
   (eval $ac_try) 2>&5
   ac_status=$?
   echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; } &&
-	 { ac_try='test -s conftest.$ac_objext'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
   (exit $ac_status); }; }; then
   mv conftest.$ac_objext cf90_test.$ac_objext
 
@@ -3820,6 +3657,7 @@ ac_compiler_gnu=$ac_cv_c_compiler_gnu
     for ac_underscore in "" "_"; do
       ac_func="$ac_foobar$ac_underscore"
       cat >conftest.$ac_ext <<_ACEOF
+#line $LINENO "configure"
 /* confdefs.h.  */
 _ACEOF
 cat confdefs.h >>conftest.$ac_ext
@@ -3843,25 +3681,15 @@ if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
 _ACEOF
 rm -f conftest.$ac_objext conftest$ac_exeext
 if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-  (eval $ac_link) 2>conftest.er1
+  (eval $ac_link) 2>&5
   ac_status=$?
-  grep -v '^ *+' conftest.er1 >conftest.err
-  rm -f conftest.er1
-  cat conftest.err >&5
   echo "$as_me:$LINENO: \$? = $ac_status" >&5
   (exit $ac_status); } &&
-	 { ac_try='test -z "$ac_c_werror_flag"
-			 || test ! -s conftest.err'
+         { ac_try='test -s conftest$ac_exeext'
   { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
   (eval $ac_try) 2>&5
   ac_status=$?
   echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; } &&
-	 { ac_try='test -s conftest$ac_exeext'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
   (exit $ac_status); }; }; then
   ac_success=yes; break 2
 else
@@ -3869,8 +3697,7 @@ rm -f conftest.err conftest.$ac_objext \
 sed 's/^/| /' conftest.$ac_ext >&5
 
 fi
-rm -f conftest.err conftest.$ac_objext \
-      conftest$ac_exeext conftest.$ac_ext
+rm -f conftest.$ac_objext conftest$ac_exeext conftest.$ac_ext
     done
   done
 
@@ -3891,6 +3718,7 @@ rm -f conftest.err conftest.$ac_objext \
         ac_func="$ac_foo_bar$ac_underscore$ac_extra"
 
         cat >conftest.$ac_ext <<_ACEOF
+#line $LINENO "configure"
 /* confdefs.h.  */
 _ACEOF
 cat confdefs.h >>conftest.$ac_ext
@@ -3914,25 +3742,15 @@ if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
 _ACEOF
 rm -f conftest.$ac_objext conftest$ac_exeext
 if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-  (eval $ac_link) 2>conftest.er1
+  (eval $ac_link) 2>&5
   ac_status=$?
-  grep -v '^ *+' conftest.er1 >conftest.err
-  rm -f conftest.er1
-  cat conftest.err >&5
   echo "$as_me:$LINENO: \$? = $ac_status" >&5
   (exit $ac_status); } &&
-	 { ac_try='test -z "$ac_c_werror_flag"
-			 || test ! -s conftest.err'
+         { ac_try='test -s conftest$ac_exeext'
   { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
   (eval $ac_try) 2>&5
   ac_status=$?
   echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; } &&
-	 { ac_try='test -s conftest$ac_exeext'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
   (exit $ac_status); }; }; then
   ac_success_extra=yes; break
 else
@@ -3940,8 +3758,7 @@ rm -f conftest.err conftest.$ac_objext \
 sed 's/^/| /' conftest.$ac_ext >&5
 
 fi
-rm -f conftest.err conftest.$ac_objext \
-      conftest$ac_exeext conftest.$ac_ext
+rm -f conftest.$ac_objext conftest$ac_exeext conftest.$ac_ext
      done
 
      if test "$ac_success_extra" = "yes"; then
@@ -3976,7 +3793,7 @@ rm -f conftest.err conftest.$ac_objext conftest.$ac_ex
 sed 's/^/| /' conftest.$ac_ext >&5
 
 fi
-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
+rm -f conftest.$ac_objext conftest.$ac_ext
 ac_ext=f90
 ac_compile='$F90 -c $F90FLAGS conftest.$ac_ext >&5'
 ac_link='$F90 -o conftest$ac_exeext $F90FLAGS $LD90FLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
@@ -4200,6 +4017,223 @@ ac_ext=c
 fi
 
 
+echo "$as_me:$LINENO: checking for Fortran 90 module file names" >&5
+echo $ECHO_N "checking for Fortran 90 module file names... $ECHO_C" >&6
+if test "${ac_cv_f90_module_names+set}" = set; then
+  echo $ECHO_N "(cached) $ECHO_C" >&6
+else
+  ac_ext=f90
+ac_compile='$F90 -c $F90FLAGS conftest.$ac_ext >&5'
+ac_link='$F90 -o conftest$ac_exeext $F90FLAGS $LD90FLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
+ac_compiler_gnu=$ac_cv_f90_compiler_gnu
+
+# carry out the test in a new directory, so that we don't miss anything
+mkdir conftest
+cd conftest
+cat >conftest.$ac_ext <<_ACEOF
+MODULE Bar
+END MODULE Bar
+_ACEOF
+rm -f conftest.$ac_objext
+if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+  (eval $ac_compile) 2>&5
+  ac_status=$?
+  echo "$as_me:$LINENO: \$? = $ac_status" >&5
+  (exit $ac_status); } &&
+         { ac_try='test -s conftest.$ac_objext'
+  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+  (eval $ac_try) 2>&5
+  ac_status=$?
+  echo "$as_me:$LINENO: \$? = $ac_status" >&5
+  (exit $ac_status); }; }; then
+  ac_cv_f90_module_names=
+ac_file_list=*
+for ac_file in $ac_file_list; do
+   case $ac_file in
+      # don't care for original source and object files
+      conftest.$ac_ext | conftest.$ac_objext | conftest.err )
+          :
+          ;;
+      # look for new files derived from the file name
+      *conftest*)
+          ac_pat=`echo $ac_file | sed s/conftest/%FILE%/`
+	    ac_exists=false
+  for ac_i in $ac_cv_f90_module_names; do
+    if test x"$ac_pat" = x"$ac_i"; then
+      ac_exists=true
+      break
+    fi
+  done
+
+  if test x"$ac_exists" = xtrue; then
+  :
+else
+  ac_cv_f90_module_names="$ac_cv_f90_module_names $ac_pat"
+fi
+
+          ;;
+      # look for new files derived from the module name,
+      # with different case translation schemes
+      *Bar*)
+          ac_pat=`echo $ac_file | sed s/Bar/%Module%/`
+	    ac_exists=false
+  for ac_i in $ac_cv_f90_module_names; do
+    if test x"$ac_pat" = x"$ac_i"; then
+      ac_exists=true
+      break
+    fi
+  done
+
+  if test x"$ac_exists" = xtrue; then
+  :
+else
+  ac_cv_f90_module_names="$ac_cv_f90_module_names $ac_pat"
+fi
+
+          ;;
+      *bar*)
+          ac_pat=`echo $ac_file | sed s/bar/%module%/`
+	    ac_exists=false
+  for ac_i in $ac_cv_f90_module_names; do
+    if test x"$ac_pat" = x"$ac_i"; then
+      ac_exists=true
+      break
+    fi
+  done
+
+  if test x"$ac_exists" = xtrue; then
+  :
+else
+  ac_cv_f90_module_names="$ac_cv_f90_module_names $ac_pat"
+fi
+
+          ;;
+      *BAR*)
+          ac_pat=`echo $ac_file | sed s/BAR/%MODULE%/`
+	    ac_exists=false
+  for ac_i in $ac_cv_f90_module_names; do
+    if test x"$ac_pat" = x"$ac_i"; then
+      ac_exists=true
+      break
+    fi
+  done
+
+  if test x"$ac_exists" = xtrue; then
+  :
+else
+  ac_cv_f90_module_names="$ac_cv_f90_module_names $ac_pat"
+fi
+
+          ;;
+       # Other files - we have no idea how they are generated
+       *)
+          { echo "$as_me:$LINENO: WARNING: Bogus file found: $ac_file" >&5
+echo "$as_me: WARNING: Bogus file found: $ac_file" >&2;}
+          ;;
+   esac
+done
+if test "x$ac_cv_f90_module_names" = "x"; then
+  { echo "$as_me:$LINENO: WARNING: Couldn't determine module file names" >&5
+echo "$as_me: WARNING: Couldn't determine module file names" >&2;}
+fi
+
+else
+  echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ac_cv_f90_module_names=
+{ echo "$as_me:$LINENO: WARNING: Couldn't determine module file names" >&5
+echo "$as_me: WARNING: Couldn't determine module file names" >&2;}
+fi
+rm -f conftest.$ac_objext conftest.$ac_ext
+cd ..
+# cleanup
+rm -rf conftest
+ac_ext=f90
+ac_compile='$F90 -c $F90FLAGS conftest.$ac_ext >&5'
+ac_link='$F90 -o conftest$ac_exeext $F90FLAGS $LD90FLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
+ac_compiler_gnu=$ac_cv_f90_compiler_gnu
+
+fi
+echo "$as_me:$LINENO: result: $ac_cv_f90_module_names" >&5
+echo "${ECHO_T}$ac_cv_f90_module_names" >&6 # AC_CACHE_CHECK
+
+# We now generate a shell script that will help us to figure out the correct
+# module file names, using the value of ac_cv_f90_module_names
+
+echo "Generating shell script modnam"
+
+cat > scripts/modnam << EOF
+#! /bin/sh
+# This script is auto-generated by configure
+#
+usage="\\
+Usage: \$0 [FILES]
+
+[FILES] are Fortran 90 source files.
+The output is a list of module file names that the Fortran 90 compiler
+generates when compiling [FILES]."
+
+list=
+empty=
+
+if test \$# -eq 0; then
+   echo "\$usage"; exit 0
+fi
+
+while test \$# != 0; do
+
+  file=\$1
+  shift
+
+# strip suffix
+  base=\`echo \$file | sed 's/[.][^.]*$//'\`
+
+  test ! -f \$file && continue
+
+# Look for module definitions and transform them to upper / lower case
+  mods=\`cat \$file | sed '/^ *[mM][oO][dD][uU][lL][eE]/!d;s/^ *[mM][oO][dD][uU][lL][eE] *\([A-Za-z_][A-Za-z0-9_]*\).*\$/\1/'\`
+  upper=\`echo \$mods | tr a-z A-Z\`
+  lower=\`echo \$mods | tr A-Z a-z\`
+
+# Here, the patterns for generating module file names were inserted by configure
+  for trans in $ac_cv_f90_module_names; do
+
+    pat=\`echo \$trans | sed 's/.*\(%.*%\).*/\1/'\`
+    var=empty
+    case \$pat in
+       %MODULE%)
+          var=upper ;;
+       %Module%)
+          var=mods ;;
+       %module%)
+          var=lower ;;
+       %FILE%)
+          test -n "\$mods" && var=base ;;
+    esac
+    new=\`eval '(for i in \$'\$var '; do echo \$trans | sed s/\$pat/\$i/; done)'\`
+    list="\$list \$new"
+  done
+done
+
+echo \$list
+# end of configure-generated script
+EOF
+chmod 755 scripts/modnam
+
+pat=`echo $ac_cv_f90_module_names | sed 's/.*\(%.*%\).*/\1/'`
+F90_MODULE_NAMES=empty
+case $pat in
+       %MODULE%)
+          F90_MODULE_NAMES=UPPER ;;
+       %Module%)
+          F90_MODULE_NAMES=Mixed ;;
+       %module%)
+          F90_MODULE_NAMES=lower ;;
+       *)
+          F90_MODULE_NAMES=unknown ;;
+esac
+
 ac_ext=c
 ac_cpp='$CPP $CPPFLAGS'
 ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
@@ -4241,6 +4275,7 @@ do
   # On the NeXT, cc -E runs the code through the compiler's parser,
   # not just through cpp. "Syntax error" is here to catch this case.
   cat >conftest.$ac_ext <<_ACEOF
+#line $LINENO "configure"
 /* confdefs.h.  */
 _ACEOF
 cat confdefs.h >>conftest.$ac_ext
@@ -4251,7 +4286,7 @@ cat >>conftest.$ac_ext <<_ACEOF
 #else
 # include <assert.h>
 #endif
-		     Syntax error
+                     Syntax error
 _ACEOF
 if { (eval echo "$as_me:$LINENO: \"$ac_cpp conftest.$ac_ext\"") >&5
   (eval $ac_cpp conftest.$ac_ext) 2>conftest.er1
@@ -4263,7 +4298,6 @@ if { (eval echo "$as_me:$LINENO: \"$ac_cpp conftest.$a
   (exit $ac_status); } >/dev/null; then
   if test -s conftest.err; then
     ac_cpp_err=$ac_c_preproc_warn_flag
-    ac_cpp_err=$ac_cpp_err$ac_c_werror_flag
   else
     ac_cpp_err=
   fi
@@ -4284,6 +4318,7 @@ rm -f conftest.err conftest.$ac_ext
   # OK, works on sane cases.  Now check whether non-existent headers
   # can be detected and how.
   cat >conftest.$ac_ext <<_ACEOF
+#line $LINENO "configure"
 /* confdefs.h.  */
 _ACEOF
 cat confdefs.h >>conftest.$ac_ext
@@ -4301,7 +4336,6 @@ if { (eval echo "$as_me:$LINENO: \"$ac_cpp conftest.$a
   (exit $ac_status); } >/dev/null; then
   if test -s conftest.err; then
     ac_cpp_err=$ac_c_preproc_warn_flag
-    ac_cpp_err=$ac_cpp_err$ac_c_werror_flag
   else
     ac_cpp_err=
   fi
@@ -4348,6 +4382,7 @@ do
   # On the NeXT, cc -E runs the code through the compiler's parser,
   # not just through cpp. "Syntax error" is here to catch this case.
   cat >conftest.$ac_ext <<_ACEOF
+#line $LINENO "configure"
 /* confdefs.h.  */
 _ACEOF
 cat confdefs.h >>conftest.$ac_ext
@@ -4358,7 +4393,7 @@ cat >>conftest.$ac_ext <<_ACEOF
 #else
 # include <assert.h>
 #endif
-		     Syntax error
+                     Syntax error
 _ACEOF
 if { (eval echo "$as_me:$LINENO: \"$ac_cpp conftest.$ac_ext\"") >&5
   (eval $ac_cpp conftest.$ac_ext) 2>conftest.er1
@@ -4370,7 +4405,6 @@ if { (eval echo "$as_me:$LINENO: \"$ac_cpp conftest.$a
   (exit $ac_status); } >/dev/null; then
   if test -s conftest.err; then
     ac_cpp_err=$ac_c_preproc_warn_flag
-    ac_cpp_err=$ac_cpp_err$ac_c_werror_flag
   else
     ac_cpp_err=
   fi
@@ -4391,6 +4425,7 @@ rm -f conftest.err conftest.$ac_ext
   # OK, works on sane cases.  Now check whether non-existent headers
   # can be detected and how.
   cat >conftest.$ac_ext <<_ACEOF
+#line $LINENO "configure"
 /* confdefs.h.  */
 _ACEOF
 cat confdefs.h >>conftest.$ac_ext
@@ -4408,7 +4443,6 @@ if { (eval echo "$as_me:$LINENO: \"$ac_cpp conftest.$a
   (exit $ac_status); } >/dev/null; then
   if test -s conftest.err; then
     ac_cpp_err=$ac_c_preproc_warn_flag
-    ac_cpp_err=$ac_cpp_err$ac_c_werror_flag
   else
     ac_cpp_err=
   fi
@@ -4469,6 +4503,7 @@ else
   echo $ECHO_N "(cached) $ECHO_C" >&6
 else
   cat >conftest.$ac_ext <<_ACEOF
+#line $LINENO "configure"
 /* confdefs.h.  */
 _ACEOF
 cat confdefs.h >>conftest.$ac_ext
@@ -4489,21 +4524,11 @@ if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
 _ACEOF
 rm -f conftest.$ac_objext
 if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-  (eval $ac_compile) 2>conftest.er1
+  (eval $ac_compile) 2>&5
   ac_status=$?
-  grep -v '^ *+' conftest.er1 >conftest.err
-  rm -f conftest.er1
-  cat conftest.err >&5
   echo "$as_me:$LINENO: \$? = $ac_status" >&5
   (exit $ac_status); } &&
-	 { ac_try='test -z "$ac_c_werror_flag"
-			 || test ! -s conftest.err'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; } &&
-	 { ac_try='test -s conftest.$ac_objext'
+         { ac_try='test -s conftest.$ac_objext'
   { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
   (eval $ac_try) 2>&5
   ac_status=$?
@@ -4516,11 +4541,12 @@ rm -f conftest.err conftest.$ac_objext conftest.$ac_ex
 
 ac_cv_header_stdc=no
 fi
-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
+rm -f conftest.$ac_objext conftest.$ac_ext
 
 if test $ac_cv_header_stdc = yes; then
   # SunOS 4.x string.h does not declare mem*, contrary to ANSI.
   cat >conftest.$ac_ext <<_ACEOF
+#line $LINENO "configure"
 /* confdefs.h.  */
 _ACEOF
 cat confdefs.h >>conftest.$ac_ext
@@ -4542,6 +4568,7 @@ if test $ac_cv_header_stdc = yes; then
 if test $ac_cv_header_stdc = yes; then
   # ISC 2.0.2 stdlib.h does not declare free, contrary to ANSI.
   cat >conftest.$ac_ext <<_ACEOF
+#line $LINENO "configure"
 /* confdefs.h.  */
 _ACEOF
 cat confdefs.h >>conftest.$ac_ext
@@ -4566,6 +4593,7 @@ else
   :
 else
   cat >conftest.$ac_ext <<_ACEOF
+#line $LINENO "configure"
 /* confdefs.h.  */
 _ACEOF
 cat confdefs.h >>conftest.$ac_ext
@@ -4577,9 +4605,9 @@ cat >>conftest.$ac_ext <<_ACEOF
 # define TOUPPER(c) (ISLOWER(c) ? 'A' + ((c) - 'a') : (c))
 #else
 # define ISLOWER(c) \
-		   (('a' <= (c) && (c) <= 'i') \
-		     || ('j' <= (c) && (c) <= 'r') \
-		     || ('s' <= (c) && (c) <= 'z'))
+                   (('a' <= (c) && (c) <= 'i') \
+                     || ('j' <= (c) && (c) <= 'r') \
+                     || ('s' <= (c) && (c) <= 'z'))
 # define TOUPPER(c) (ISLOWER(c) ? ((c) | 0x40) : (c))
 #endif
 
@@ -4590,7 +4618,7 @@ main ()
   int i;
   for (i = 0; i < 256; i++)
     if (XOR (islower (i), ISLOWER (i))
-	|| toupper (i) != TOUPPER (i))
+        || toupper (i) != TOUPPER (i))
       exit(2);
   exit (0);
 }
@@ -4615,7 +4643,7 @@ rm -f core *.core gmon.out bb.out conftest$ac_exeext c
 ( exit $ac_status )
 ac_cv_header_stdc=no
 fi
-rm -f core *.core gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
+rm -f core core.* *.core gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
 fi
 fi
 fi
@@ -4640,7 +4668,7 @@ for ac_header in sys/types.h sys/stat.h stdlib.h strin
 
 
 for ac_header in sys/types.h sys/stat.h stdlib.h string.h memory.h strings.h \
-		  inttypes.h stdint.h unistd.h
+                  inttypes.h stdint.h unistd.h
 do
 as_ac_Header=`echo "ac_cv_header_$ac_header" | $as_tr_sh`
 echo "$as_me:$LINENO: checking for $ac_header" >&5
@@ -4649,6 +4677,7 @@ else
   echo $ECHO_N "(cached) $ECHO_C" >&6
 else
   cat >conftest.$ac_ext <<_ACEOF
+#line $LINENO "configure"
 /* confdefs.h.  */
 _ACEOF
 cat confdefs.h >>conftest.$ac_ext
@@ -4660,21 +4689,11 @@ if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
 _ACEOF
 rm -f conftest.$ac_objext
 if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-  (eval $ac_compile) 2>conftest.er1
+  (eval $ac_compile) 2>&5
   ac_status=$?
-  grep -v '^ *+' conftest.er1 >conftest.err
-  rm -f conftest.er1
-  cat conftest.err >&5
   echo "$as_me:$LINENO: \$? = $ac_status" >&5
   (exit $ac_status); } &&
-	 { ac_try='test -z "$ac_c_werror_flag"
-			 || test ! -s conftest.err'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; } &&
-	 { ac_try='test -s conftest.$ac_objext'
+         { ac_try='test -s conftest.$ac_objext'
   { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
   (eval $ac_try) 2>&5
   ac_status=$?
@@ -4687,7 +4706,7 @@ rm -f conftest.err conftest.$ac_objext conftest.$ac_ex
 
 eval "$as_ac_Header=no"
 fi
-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
+rm -f conftest.$ac_objext conftest.$ac_ext
 fi
 echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_Header'}'`" >&5
 echo "${ECHO_T}`eval echo '${'$as_ac_Header'}'`" >&6
@@ -4701,11 +4720,16 @@ done
 done
 
 
-  # clean out junk possibly left behind by a previous configuration
-  rm -f utils/getopt.h
-  # Check for getopt_long support
 
-for ac_header in getopt.h
+
+
+
+
+
+
+
+
+for ac_header in unistd.h sys/pstat.h sys/sysmp.h sys/sysinfo.h sys/table.h sys/param.h sys/sysctl.h sys/sytemcfg.h machine/hal_sysinfo.h
 do
 as_ac_Header=`echo "ac_cv_header_$ac_header" | $as_tr_sh`
 if eval "test \"\${$as_ac_Header+set}\" = set"; then
@@ -4721,6 +4745,7 @@ cat >conftest.$ac_ext <<_ACEOF
 echo "$as_me:$LINENO: checking $ac_header usability" >&5
 echo $ECHO_N "checking $ac_header usability... $ECHO_C" >&6
 cat >conftest.$ac_ext <<_ACEOF
+#line $LINENO "configure"
 /* confdefs.h.  */
 _ACEOF
 cat confdefs.h >>conftest.$ac_ext
@@ -4731,25 +4756,15 @@ if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
 _ACEOF
 rm -f conftest.$ac_objext
 if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-  (eval $ac_compile) 2>conftest.er1
+  (eval $ac_compile) 2>&5
   ac_status=$?
-  grep -v '^ *+' conftest.er1 >conftest.err
-  rm -f conftest.er1
-  cat conftest.err >&5
   echo "$as_me:$LINENO: \$? = $ac_status" >&5
   (exit $ac_status); } &&
-	 { ac_try='test -z "$ac_c_werror_flag"
-			 || test ! -s conftest.err'
+         { ac_try='test -s conftest.$ac_objext'
   { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
   (eval $ac_try) 2>&5
   ac_status=$?
   echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; } &&
-	 { ac_try='test -s conftest.$ac_objext'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
   (exit $ac_status); }; }; then
   ac_header_compiler=yes
 else
@@ -4758,7 +4773,7 @@ rm -f conftest.err conftest.$ac_objext conftest.$ac_ex
 
 ac_header_compiler=no
 fi
-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
+rm -f conftest.$ac_objext conftest.$ac_ext
 echo "$as_me:$LINENO: result: $ac_header_compiler" >&5
 echo "${ECHO_T}$ac_header_compiler" >&6
 
@@ -4766,6 +4781,7 @@ cat >conftest.$ac_ext <<_ACEOF
 echo "$as_me:$LINENO: checking $ac_header presence" >&5
 echo $ECHO_N "checking $ac_header presence... $ECHO_C" >&6
 cat >conftest.$ac_ext <<_ACEOF
+#line $LINENO "configure"
 /* confdefs.h.  */
 _ACEOF
 cat confdefs.h >>conftest.$ac_ext
@@ -4783,7 +4799,6 @@ if { (eval echo "$as_me:$LINENO: \"$ac_cpp conftest.$a
   (exit $ac_status); } >/dev/null; then
   if test -s conftest.err; then
     ac_cpp_err=$ac_c_preproc_warn_flag
-    ac_cpp_err=$ac_cpp_err$ac_c_werror_flag
   else
     ac_cpp_err=
   fi
@@ -4803,32 +4818,33 @@ case $ac_header_compiler:$ac_header_preproc:$ac_c_prep
 echo "${ECHO_T}$ac_header_preproc" >&6
 
 # So?  What about this header?
-case $ac_header_compiler:$ac_header_preproc:$ac_c_preproc_warn_flag in
-  yes:no: )
+case $ac_header_compiler:$ac_header_preproc in
+  yes:no )
     { echo "$as_me:$LINENO: WARNING: $ac_header: accepted by the compiler, rejected by the preprocessor!" >&5
 echo "$as_me: WARNING: $ac_header: accepted by the compiler, rejected by the preprocessor!" >&2;}
-    { echo "$as_me:$LINENO: WARNING: $ac_header: proceeding with the compiler's result" >&5
-echo "$as_me: WARNING: $ac_header: proceeding with the compiler's result" >&2;}
-    ac_header_preproc=yes
+    { echo "$as_me:$LINENO: WARNING: $ac_header: proceeding with the preprocessor's result" >&5
+echo "$as_me: WARNING: $ac_header: proceeding with the preprocessor's result" >&2;}
+    (
+      cat <<\_ASBOX
+## ------------------------------------ ##
+## Report this to bug-autoconf@gnu.org. ##
+## ------------------------------------ ##
+_ASBOX
+    ) |
+      sed "s/^/$as_me: WARNING:     /" >&2
     ;;
-  no:yes:* )
+  no:yes )
     { echo "$as_me:$LINENO: WARNING: $ac_header: present but cannot be compiled" >&5
 echo "$as_me: WARNING: $ac_header: present but cannot be compiled" >&2;}
-    { echo "$as_me:$LINENO: WARNING: $ac_header:     check for missing prerequisite headers?" >&5
-echo "$as_me: WARNING: $ac_header:     check for missing prerequisite headers?" >&2;}
-    { echo "$as_me:$LINENO: WARNING: $ac_header: see the Autoconf documentation" >&5
-echo "$as_me: WARNING: $ac_header: see the Autoconf documentation" >&2;}
-    { echo "$as_me:$LINENO: WARNING: $ac_header:     section \"Present But Cannot Be Compiled\"" >&5
-echo "$as_me: WARNING: $ac_header:     section \"Present But Cannot Be Compiled\"" >&2;}
+    { echo "$as_me:$LINENO: WARNING: $ac_header: check for missing prerequisite headers?" >&5
+echo "$as_me: WARNING: $ac_header: check for missing prerequisite headers?" >&2;}
     { echo "$as_me:$LINENO: WARNING: $ac_header: proceeding with the preprocessor's result" >&5
 echo "$as_me: WARNING: $ac_header: proceeding with the preprocessor's result" >&2;}
-    { echo "$as_me:$LINENO: WARNING: $ac_header: in the future, the compiler will take precedence" >&5
-echo "$as_me: WARNING: $ac_header: in the future, the compiler will take precedence" >&2;}
     (
       cat <<\_ASBOX
-## ------------------------------ ##
-## Report this to gezelter@nd.edu ##
-## ------------------------------ ##
+## ------------------------------------ ##
+## Report this to bug-autoconf@gnu.org. ##
+## ------------------------------------ ##
 _ASBOX
     ) |
       sed "s/^/$as_me: WARNING:     /" >&2
@@ -4839,7 +4855,7 @@ else
 if eval "test \"\${$as_ac_Header+set}\" = set"; then
   echo $ECHO_N "(cached) $ECHO_C" >&6
 else
-  eval "$as_ac_Header=\$ac_header_preproc"
+  eval "$as_ac_Header=$ac_header_preproc"
 fi
 echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_Header'}'`" >&5
 echo "${ECHO_T}`eval echo '${'$as_ac_Header'}'`" >&6
@@ -4855,7 +4871,11 @@ for ac_func in getopt_long
 done
 
 
-for ac_func in getopt_long
+
+
+
+
+for ac_func in pstat_getstatic sysmp getsysinfo sysctl table
 do
 as_ac_var=`echo "ac_cv_func_$ac_func" | $as_tr_sh`
 echo "$as_me:$LINENO: checking for $ac_func" >&5
@@ -4864,28 +4884,21 @@ else
   echo $ECHO_N "(cached) $ECHO_C" >&6
 else
   cat >conftest.$ac_ext <<_ACEOF
+#line $LINENO "configure"
 /* confdefs.h.  */
 _ACEOF
 cat confdefs.h >>conftest.$ac_ext
 cat >>conftest.$ac_ext <<_ACEOF
 /* end confdefs.h.  */
-/* Define $ac_func to an innocuous variant, in case <limits.h> declares $ac_func.
-   For example, HP-UX 11i <limits.h> declares gettimeofday.  */
-#define $ac_func innocuous_$ac_func
-
 /* System header to define __stub macros and hopefully few prototypes,
     which can conflict with char $ac_func (); below.
     Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
     <limits.h> exists even on freestanding compilers.  */
-
 #ifdef __STDC__
 # include <limits.h>
 #else
 # include <assert.h>
 #endif
-
-#undef $ac_func
-
 /* Override any gcc2 internal prototype to avoid an error.  */
 #ifdef __cplusplus
 extern "C"
@@ -4916,25 +4929,15 @@ if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
 _ACEOF
 rm -f conftest.$ac_objext conftest$ac_exeext
 if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-  (eval $ac_link) 2>conftest.er1
+  (eval $ac_link) 2>&5
   ac_status=$?
-  grep -v '^ *+' conftest.er1 >conftest.err
-  rm -f conftest.er1
-  cat conftest.err >&5
   echo "$as_me:$LINENO: \$? = $ac_status" >&5
   (exit $ac_status); } &&
-	 { ac_try='test -z "$ac_c_werror_flag"
-			 || test ! -s conftest.err'
+         { ac_try='test -s conftest$ac_exeext'
   { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
   (eval $ac_try) 2>&5
   ac_status=$?
   echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; } &&
-	 { ac_try='test -s conftest$ac_exeext'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
   (exit $ac_status); }; }; then
   eval "$as_ac_var=yes"
 else
@@ -4943,8 +4946,7 @@ rm -f conftest.err conftest.$ac_objext \
 
 eval "$as_ac_var=no"
 fi
-rm -f conftest.err conftest.$ac_objext \
-      conftest$ac_exeext conftest.$ac_ext
+rm -f conftest.$ac_objext conftest$ac_exeext conftest.$ac_ext
 fi
 echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_var'}'`" >&5
 echo "${ECHO_T}`eval echo '${'$as_ac_var'}'`" >&6
@@ -4953,114 +4955,367 @@ else
 #define `echo "HAVE_$ac_func" | $as_tr_cpp` 1
 _ACEOF
 
-else
-  # FreeBSD has a gnugetopt library for this
-    echo "$as_me:$LINENO: checking for getopt_long in -lgnugetopt" >&5
-echo $ECHO_N "checking for getopt_long in -lgnugetopt... $ECHO_C" >&6
-if test "${ac_cv_lib_gnugetopt_getopt_long+set}" = set; then
-  echo $ECHO_N "(cached) $ECHO_C" >&6
-else
-  ac_check_lib_save_LIBS=$LIBS
-LIBS="-lgnugetopt  $LIBS"
+fi
+done
+
+# special check for _system_configuration because AIX <4.3.2 do not
+# contain the `physmem' member.
+echo "$as_me:$LINENO: checking for external symbol _system_configuration" >&5
+echo $ECHO_N "checking for external symbol _system_configuration... $ECHO_C" >&6
 cat >conftest.$ac_ext <<_ACEOF
+#line $LINENO "configure"
 /* confdefs.h.  */
 _ACEOF
 cat confdefs.h >>conftest.$ac_ext
 cat >>conftest.$ac_ext <<_ACEOF
 /* end confdefs.h.  */
-
-/* Override any gcc2 internal prototype to avoid an error.  */
-#ifdef __cplusplus
-extern "C"
-#endif
-/* We use char because int might match the return type of a gcc2
-   builtin and then its argument prototype would still apply.  */
-char getopt_long ();
+#include <sys/systemcfg.h>
 int
 main ()
 {
-getopt_long ();
+double x = _system_configuration.physmem;
   ;
   return 0;
 }
 _ACEOF
-rm -f conftest.$ac_objext conftest$ac_exeext
-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-  (eval $ac_link) 2>conftest.er1
+rm -f conftest.$ac_objext
+if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+  (eval $ac_compile) 2>&5
   ac_status=$?
-  grep -v '^ *+' conftest.er1 >conftest.err
-  rm -f conftest.er1
-  cat conftest.err >&5
   echo "$as_me:$LINENO: \$? = $ac_status" >&5
   (exit $ac_status); } &&
-	 { ac_try='test -z "$ac_c_werror_flag"
-			 || test ! -s conftest.err'
+         { ac_try='test -s conftest.$ac_objext'
   { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
   (eval $ac_try) 2>&5
   ac_status=$?
   echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; } &&
-	 { ac_try='test -s conftest$ac_exeext'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
   (exit $ac_status); }; }; then
-  ac_cv_lib_gnugetopt_getopt_long=yes
+  echo "$as_me:$LINENO: result: yes" >&5
+echo "${ECHO_T}yes" >&6
+
+cat >>confdefs.h <<\_ACEOF
+#define HAVE__SYSTEM_CONFIGURATION 1
+_ACEOF
+
 else
   echo "$as_me: failed program was:" >&5
 sed 's/^/| /' conftest.$ac_ext >&5
 
-ac_cv_lib_gnugetopt_getopt_long=no
+echo "$as_me:$LINENO: result: no" >&5
+echo "${ECHO_T}no" >&6
 fi
-rm -f conftest.err conftest.$ac_objext \
-      conftest$ac_exeext conftest.$ac_ext
-LIBS=$ac_check_lib_save_LIBS
+rm -f conftest.$ac_objext conftest.$ac_ext
+
+  # clean out junk possibly left behind by a previous configuration
+  rm -f src/getopt.h
+  # Check for getopt_long support
+
+for ac_header in getopt.h
+do
+as_ac_Header=`echo "ac_cv_header_$ac_header" | $as_tr_sh`
+if eval "test \"\${$as_ac_Header+set}\" = set"; then
+  echo "$as_me:$LINENO: checking for $ac_header" >&5
+echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6
+if eval "test \"\${$as_ac_Header+set}\" = set"; then
+  echo $ECHO_N "(cached) $ECHO_C" >&6
 fi
-echo "$as_me:$LINENO: result: $ac_cv_lib_gnugetopt_getopt_long" >&5
-echo "${ECHO_T}$ac_cv_lib_gnugetopt_getopt_long" >&6
-if test $ac_cv_lib_gnugetopt_getopt_long = yes; then
-  cat >>confdefs.h <<\_ACEOF
-#define HAVE_GETOPT_LONG 1
+echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_Header'}'`" >&5
+echo "${ECHO_T}`eval echo '${'$as_ac_Header'}'`" >&6
+else
+  # Is the header compilable?
+echo "$as_me:$LINENO: checking $ac_header usability" >&5
+echo $ECHO_N "checking $ac_header usability... $ECHO_C" >&6
+cat >conftest.$ac_ext <<_ACEOF
+#line $LINENO "configure"
+/* confdefs.h.  */
 _ACEOF
-
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h.  */
+$ac_includes_default
+#include <$ac_header>
+_ACEOF
+rm -f conftest.$ac_objext
+if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+  (eval $ac_compile) 2>&5
+  ac_status=$?
+  echo "$as_me:$LINENO: \$? = $ac_status" >&5
+  (exit $ac_status); } &&
+         { ac_try='test -s conftest.$ac_objext'
+  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+  (eval $ac_try) 2>&5
+  ac_status=$?
+  echo "$as_me:$LINENO: \$? = $ac_status" >&5
+  (exit $ac_status); }; }; then
+  ac_header_compiler=yes
 else
-  # use the GNU replacement
-      case $LIBOBJS in
-    "getopt.$ac_objext"   | \
-  *" getopt.$ac_objext"   | \
-    "getopt.$ac_objext "* | \
-  *" getopt.$ac_objext "* ) ;;
-  *) LIBOBJS="$LIBOBJS getopt.$ac_objext" ;;
-esac
+  echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
 
-      case $LIBOBJS in
-    "getopt1.$ac_objext"   | \
-  *" getopt1.$ac_objext"   | \
-    "getopt1.$ac_objext "* | \
-  *" getopt1.$ac_objext "* ) ;;
-  *) LIBOBJS="$LIBOBJS getopt1.$ac_objext" ;;
-esac
-
-                ac_config_links="$ac_config_links utils/getopt.h:utils/gnugetopt.h"
-
+ac_header_compiler=no
 fi
+rm -f conftest.$ac_objext conftest.$ac_ext
+echo "$as_me:$LINENO: result: $ac_header_compiler" >&5
+echo "${ECHO_T}$ac_header_compiler" >&6
 
-fi
-done
-
-
-
-case $debug in
-  1)
-     ;;
-  *)
+# Is the header present?
+echo "$as_me:$LINENO: checking $ac_header presence" >&5
+echo $ECHO_N "checking $ac_header presence... $ECHO_C" >&6
+cat >conftest.$ac_ext <<_ACEOF
+#line $LINENO "configure"
+/* confdefs.h.  */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h.  */
+#include <$ac_header>
+_ACEOF
+if { (eval echo "$as_me:$LINENO: \"$ac_cpp conftest.$ac_ext\"") >&5
+  (eval $ac_cpp conftest.$ac_ext) 2>conftest.er1
+  ac_status=$?
+  grep -v '^ *+' conftest.er1 >conftest.err
+  rm -f conftest.er1
+  cat conftest.err >&5
+  echo "$as_me:$LINENO: \$? = $ac_status" >&5
+  (exit $ac_status); } >/dev/null; then
+  if test -s conftest.err; then
+    ac_cpp_err=$ac_c_preproc_warn_flag
+  else
+    ac_cpp_err=
+  fi
+else
+  ac_cpp_err=yes
+fi
+if test -z "$ac_cpp_err"; then
+  ac_header_preproc=yes
+else
+  echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+  ac_header_preproc=no
+fi
+rm -f conftest.err conftest.$ac_ext
+echo "$as_me:$LINENO: result: $ac_header_preproc" >&5
+echo "${ECHO_T}$ac_header_preproc" >&6
+
+# So?  What about this header?
+case $ac_header_compiler:$ac_header_preproc in
+  yes:no )
+    { echo "$as_me:$LINENO: WARNING: $ac_header: accepted by the compiler, rejected by the preprocessor!" >&5
+echo "$as_me: WARNING: $ac_header: accepted by the compiler, rejected by the preprocessor!" >&2;}
+    { echo "$as_me:$LINENO: WARNING: $ac_header: proceeding with the preprocessor's result" >&5
+echo "$as_me: WARNING: $ac_header: proceeding with the preprocessor's result" >&2;}
+    (
+      cat <<\_ASBOX
+## ------------------------------------ ##
+## Report this to bug-autoconf@gnu.org. ##
+## ------------------------------------ ##
+_ASBOX
+    ) |
+      sed "s/^/$as_me: WARNING:     /" >&2
+    ;;
+  no:yes )
+    { echo "$as_me:$LINENO: WARNING: $ac_header: present but cannot be compiled" >&5
+echo "$as_me: WARNING: $ac_header: present but cannot be compiled" >&2;}
+    { echo "$as_me:$LINENO: WARNING: $ac_header: check for missing prerequisite headers?" >&5
+echo "$as_me: WARNING: $ac_header: check for missing prerequisite headers?" >&2;}
+    { echo "$as_me:$LINENO: WARNING: $ac_header: proceeding with the preprocessor's result" >&5
+echo "$as_me: WARNING: $ac_header: proceeding with the preprocessor's result" >&2;}
+    (
+      cat <<\_ASBOX
+## ------------------------------------ ##
+## Report this to bug-autoconf@gnu.org. ##
+## ------------------------------------ ##
+_ASBOX
+    ) |
+      sed "s/^/$as_me: WARNING:     /" >&2
+    ;;
+esac
+echo "$as_me:$LINENO: checking for $ac_header" >&5
+echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6
+if eval "test \"\${$as_ac_Header+set}\" = set"; then
+  echo $ECHO_N "(cached) $ECHO_C" >&6
+else
+  eval "$as_ac_Header=$ac_header_preproc"
+fi
+echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_Header'}'`" >&5
+echo "${ECHO_T}`eval echo '${'$as_ac_Header'}'`" >&6
+
+fi
+if test `eval echo '${'$as_ac_Header'}'` = yes; then
+  cat >>confdefs.h <<_ACEOF
+#define `echo "HAVE_$ac_header" | $as_tr_cpp` 1
+_ACEOF
+
+fi
+
+done
+
+
+for ac_func in getopt_long
+do
+as_ac_var=`echo "ac_cv_func_$ac_func" | $as_tr_sh`
+echo "$as_me:$LINENO: checking for $ac_func" >&5
+echo $ECHO_N "checking for $ac_func... $ECHO_C" >&6
+if eval "test \"\${$as_ac_var+set}\" = set"; then
+  echo $ECHO_N "(cached) $ECHO_C" >&6
+else
+  cat >conftest.$ac_ext <<_ACEOF
+#line $LINENO "configure"
+/* confdefs.h.  */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h.  */
+/* System header to define __stub macros and hopefully few prototypes,
+    which can conflict with char $ac_func (); below.
+    Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
+    <limits.h> exists even on freestanding compilers.  */
+#ifdef __STDC__
+# include <limits.h>
+#else
+# include <assert.h>
+#endif
+/* Override any gcc2 internal prototype to avoid an error.  */
+#ifdef __cplusplus
+extern "C"
+{
+#endif
+/* We use char because int might match the return type of a gcc2
+   builtin and then its argument prototype would still apply.  */
+char $ac_func ();
+/* The GNU C library defines this for functions which it implements
+    to always fail with ENOSYS.  Some functions are actually named
+    something starting with __ and the normal name is an alias.  */
+#if defined (__stub_$ac_func) || defined (__stub___$ac_func)
+choke me
+#else
+char (*f) () = $ac_func;
+#endif
+#ifdef __cplusplus
+}
+#endif
+
+int
+main ()
+{
+return f != $ac_func;
+  ;
+  return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext conftest$ac_exeext
+if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+  (eval $ac_link) 2>&5
+  ac_status=$?
+  echo "$as_me:$LINENO: \$? = $ac_status" >&5
+  (exit $ac_status); } &&
+         { ac_try='test -s conftest$ac_exeext'
+  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+  (eval $ac_try) 2>&5
+  ac_status=$?
+  echo "$as_me:$LINENO: \$? = $ac_status" >&5
+  (exit $ac_status); }; }; then
+  eval "$as_ac_var=yes"
+else
+  echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+eval "$as_ac_var=no"
+fi
+rm -f conftest.$ac_objext conftest$ac_exeext conftest.$ac_ext
+fi
+echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_var'}'`" >&5
+echo "${ECHO_T}`eval echo '${'$as_ac_var'}'`" >&6
+if test `eval echo '${'$as_ac_var'}'` = yes; then
+  cat >>confdefs.h <<_ACEOF
+#define `echo "HAVE_$ac_func" | $as_tr_cpp` 1
+_ACEOF
+
+else
+  # FreeBSD has a gnugetopt library for this
+    echo "$as_me:$LINENO: checking for getopt_long in -lgnugetopt" >&5
+echo $ECHO_N "checking for getopt_long in -lgnugetopt... $ECHO_C" >&6
+if test "${ac_cv_lib_gnugetopt_getopt_long+set}" = set; then
+  echo $ECHO_N "(cached) $ECHO_C" >&6
+else
+  ac_check_lib_save_LIBS=$LIBS
+LIBS="-lgnugetopt  $LIBS"
+cat >conftest.$ac_ext <<_ACEOF
+#line $LINENO "configure"
+/* confdefs.h.  */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h.  */
+
+/* Override any gcc2 internal prototype to avoid an error.  */
+#ifdef __cplusplus
+extern "C"
+#endif
+/* We use char because int might match the return type of a gcc2
+   builtin and then its argument prototype would still apply.  */
+char getopt_long ();
+int
+main ()
+{
+getopt_long ();
+  ;
+  return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext conftest$ac_exeext
+if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+  (eval $ac_link) 2>&5
+  ac_status=$?
+  echo "$as_me:$LINENO: \$? = $ac_status" >&5
+  (exit $ac_status); } &&
+         { ac_try='test -s conftest$ac_exeext'
+  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+  (eval $ac_try) 2>&5
+  ac_status=$?
+  echo "$as_me:$LINENO: \$? = $ac_status" >&5
+  (exit $ac_status); }; }; then
+  ac_cv_lib_gnugetopt_getopt_long=yes
+else
+  echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
 
+ac_cv_lib_gnugetopt_getopt_long=no
+fi
+rm -f conftest.$ac_objext conftest$ac_exeext conftest.$ac_ext
+LIBS=$ac_check_lib_save_LIBS
+fi
+echo "$as_me:$LINENO: result: $ac_cv_lib_gnugetopt_getopt_long" >&5
+echo "${ECHO_T}$ac_cv_lib_gnugetopt_getopt_long" >&6
+if test $ac_cv_lib_gnugetopt_getopt_long = yes; then
+  cat >>confdefs.h <<\_ACEOF
+#define HAVE_GETOPT_LONG 1
+_ACEOF
 
+else
+  # use the GNU replacement
+      LIBOBJS="$LIBOBJS getopt.$ac_objext"
+      LIBOBJS="$LIBOBJS getopt1.$ac_objext"
+                ac_config_links="$ac_config_links src/getopt.h:src/utils/gnugetopt.h"
 
+fi
 
+fi
+done
 
 
+
+case $debug in
+  1)
+     ;;
+  *)
+
+
+
+
+
+
 echo "$as_me:$LINENO: checking whether we are *really* using GNU cc" >&5
 echo $ECHO_N "checking whether we are *really* using GNU cc... $ECHO_C" >&6
 if test "${ac_cv_prog_really_gcc+set}" = set; then
@@ -5136,7 +5391,7 @@ if test "$ac_test_CFLAGS" != "set"; then
         fi;;
    *darwin*)
 	if test "$CC" = xlc -o "$CC" = cc; then
-        	CFLAGS="-qthreaded -O5 -qtune=auto -qarch=auto -qunroll=auto -qaltivec"
+        	CFLAGS="-qthreaded -O -qtune=auto -qarch=auto -qunroll=auto -qaltivec"
         fi;;
   esac
 
@@ -5587,8 +5842,8 @@ if test "$ac_test_CXXFLAGS" != "set"; then
 		echo "*******************************************************"
         fi;;
    *darwin*)
-	if test "$CXX" = xlc++; then
-        	CXXFLAGS="-qthreaded -O5 -qtune=auto -qarch=auto -qunroll=auto -qaltivec"
+	if test "$CXX" = xlc++ -o "$CXX" = xlC ; then
+        	CXXFLAGS="-qthreaded -O -qtune=auto -qarch=auto -qunroll=auto -qaltivec"
         fi;;
   esac
 
@@ -6000,7 +6255,7 @@ if test x"$F90FLAGS" = x ; then
         fi;;
    *darwin*)
 	if test "$F90" = f90 -o "$F90" = xlf90 -o "$F90" = xlf95; then
-        	F90FLAGS="-qthreaded -O5 -qtune=auto -qarch=auto -qunroll=auto"
+        	F90FLAGS="-qthreaded -O -qtune=auto -qarch=auto -qunroll=auto"
         fi;;
   esac
 
@@ -6090,7 +6345,6 @@ esac
 # AIX 4 /usr/bin/installbsd, which doesn't work without a -g flag
 # AFS /usr/afsws/bin/install, which mishandles nonexistent args
 # SVR4 /usr/ucb/install, which tries to use the nonexistent group "staff"
-# OS/2's system install, which has a completely different semantic
 # ./install, which can be erroneously created by make from ./install.sh.
 echo "$as_me:$LINENO: checking for a BSD-compatible install" >&5
 echo $ECHO_N "checking for a BSD-compatible install... $ECHO_C" >&6
@@ -6107,7 +6361,6 @@ case $as_dir/ in
 case $as_dir/ in
   ./ | .// | /cC/* | \
   /etc/* | /usr/sbin/* | /usr/etc/* | /sbin/* | /usr/afsws/bin/* | \
-  ?:\\/os2\\/install\\/* | ?:\\/OS2\\/INSTALL\\/* | \
   /usr/ucb/* ) ;;
   *)
     # OSF1 and SCO ODT 3.0 have their own names for install.
@@ -6115,20 +6368,20 @@ case $as_dir/ in
     # by default.
     for ac_prog in ginstall scoinst install; do
       for ac_exec_ext in '' $ac_executable_extensions; do
-	if $as_executable_p "$as_dir/$ac_prog$ac_exec_ext"; then
-	  if test $ac_prog = install &&
-	    grep dspmsg "$as_dir/$ac_prog$ac_exec_ext" >/dev/null 2>&1; then
-	    # AIX install.  It has an incompatible calling convention.
-	    :
-	  elif test $ac_prog = install &&
-	    grep pwplus "$as_dir/$ac_prog$ac_exec_ext" >/dev/null 2>&1; then
-	    # program-specific install script used by HP pwplus--don't use.
-	    :
-	  else
-	    ac_cv_path_install="$as_dir/$ac_prog$ac_exec_ext -c"
-	    break 3
-	  fi
-	fi
+        if $as_executable_p "$as_dir/$ac_prog$ac_exec_ext"; then
+          if test $ac_prog = install &&
+            grep dspmsg "$as_dir/$ac_prog$ac_exec_ext" >/dev/null 2>&1; then
+            # AIX install.  It has an incompatible calling convention.
+            :
+          elif test $ac_prog = install &&
+            grep pwplus "$as_dir/$ac_prog$ac_exec_ext" >/dev/null 2>&1; then
+            # program-specific install script used by HP pwplus--don't use.
+            :
+          else
+            ac_cv_path_install="$as_dir/$ac_prog$ac_exec_ext -c"
+            break 3
+          fi
+        fi
       done
     done
     ;;
@@ -6171,7 +6424,7 @@ set dummy ${MAKE-make}; ac_make=`echo "$2" | sed 'y,:.
 
 echo "$as_me:$LINENO: checking whether ${MAKE-make} sets \$(MAKE)" >&5
 echo $ECHO_N "checking whether ${MAKE-make} sets \$(MAKE)... $ECHO_C" >&6
-set dummy ${MAKE-make}; ac_make=`echo "$2" | sed 'y,:./+-,___p_,'`
+set dummy ${MAKE-make}; ac_make=`echo "$2" | sed 'y,./+-,__p_,'`
 if eval "test \"\${ac_cv_prog_make_${ac_make}_set+set}\" = set"; then
   echo $ECHO_N "(cached) $ECHO_C" >&6
 else
@@ -6370,6 +6623,7 @@ cat >conftest.$ac_ext <<_ACEOF
   ac_check_lib_save_LIBS=$LIBS
 LIBS="-lfl  $LIBS"
 cat >conftest.$ac_ext <<_ACEOF
+#line $LINENO "configure"
 /* confdefs.h.  */
 _ACEOF
 cat confdefs.h >>conftest.$ac_ext
@@ -6393,21 +6647,11 @@ if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
 _ACEOF
 rm -f conftest.$ac_objext conftest$ac_exeext
 if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-  (eval $ac_link) 2>conftest.er1
+  (eval $ac_link) 2>&5
   ac_status=$?
-  grep -v '^ *+' conftest.er1 >conftest.err
-  rm -f conftest.er1
-  cat conftest.err >&5
   echo "$as_me:$LINENO: \$? = $ac_status" >&5
   (exit $ac_status); } &&
-	 { ac_try='test -z "$ac_c_werror_flag"
-			 || test ! -s conftest.err'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; } &&
-	 { ac_try='test -s conftest$ac_exeext'
+         { ac_try='test -s conftest$ac_exeext'
   { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
   (eval $ac_try) 2>&5
   ac_status=$?
@@ -6420,8 +6664,7 @@ rm -f conftest.err conftest.$ac_objext \
 
 ac_cv_lib_fl_yywrap=no
 fi
-rm -f conftest.err conftest.$ac_objext \
-      conftest$ac_exeext conftest.$ac_ext
+rm -f conftest.$ac_objext conftest$ac_exeext conftest.$ac_ext
 LIBS=$ac_check_lib_save_LIBS
 fi
 echo "$as_me:$LINENO: result: $ac_cv_lib_fl_yywrap" >&5
@@ -6437,6 +6680,7 @@ cat >conftest.$ac_ext <<_ACEOF
   ac_check_lib_save_LIBS=$LIBS
 LIBS="-ll  $LIBS"
 cat >conftest.$ac_ext <<_ACEOF
+#line $LINENO "configure"
 /* confdefs.h.  */
 _ACEOF
 cat confdefs.h >>conftest.$ac_ext
@@ -6460,25 +6704,15 @@ if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
 _ACEOF
 rm -f conftest.$ac_objext conftest$ac_exeext
 if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-  (eval $ac_link) 2>conftest.er1
+  (eval $ac_link) 2>&5
   ac_status=$?
-  grep -v '^ *+' conftest.er1 >conftest.err
-  rm -f conftest.er1
-  cat conftest.err >&5
   echo "$as_me:$LINENO: \$? = $ac_status" >&5
   (exit $ac_status); } &&
-	 { ac_try='test -z "$ac_c_werror_flag"
-			 || test ! -s conftest.err'
+         { ac_try='test -s conftest$ac_exeext'
   { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
   (eval $ac_try) 2>&5
   ac_status=$?
   echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; } &&
-	 { ac_try='test -s conftest$ac_exeext'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
   (exit $ac_status); }; }; then
   ac_cv_lib_l_yywrap=yes
 else
@@ -6487,8 +6721,7 @@ rm -f conftest.err conftest.$ac_objext \
 
 ac_cv_lib_l_yywrap=no
 fi
-rm -f conftest.err conftest.$ac_objext \
-      conftest$ac_exeext conftest.$ac_ext
+rm -f conftest.$ac_objext conftest$ac_exeext conftest.$ac_ext
 LIBS=$ac_check_lib_save_LIBS
 fi
 echo "$as_me:$LINENO: result: $ac_cv_lib_l_yywrap" >&5
@@ -6550,25 +6783,15 @@ if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
 _ACEOF
 rm -f conftest.$ac_objext conftest$ac_exeext
 if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-  (eval $ac_link) 2>conftest.er1
+  (eval $ac_link) 2>&5
   ac_status=$?
-  grep -v '^ *+' conftest.er1 >conftest.err
-  rm -f conftest.er1
-  cat conftest.err >&5
   echo "$as_me:$LINENO: \$? = $ac_status" >&5
   (exit $ac_status); } &&
-	 { ac_try='test -z "$ac_c_werror_flag"
-			 || test ! -s conftest.err'
+         { ac_try='test -s conftest$ac_exeext'
   { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
   (eval $ac_try) 2>&5
   ac_status=$?
   echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; } &&
-	 { ac_try='test -s conftest$ac_exeext'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
   (exit $ac_status); }; }; then
   ac_cv_prog_lex_yytext_pointer=yes
 else
@@ -6576,8 +6799,7 @@ rm -f conftest.err conftest.$ac_objext \
 sed 's/^/| /' conftest.$ac_ext >&5
 
 fi
-rm -f conftest.err conftest.$ac_objext \
-      conftest$ac_exeext conftest.$ac_ext
+rm -f conftest.$ac_objext conftest$ac_exeext conftest.$ac_ext
 LIBS=$ac_save_LIBS
 rm -f "${LEX_OUTPUT_ROOT}.c"
 
@@ -6661,13 +6883,13 @@ _ACEOF
       # `set' does not quote correctly, so add quotes (double-quote
       # substitution turns \\\\ into \\, and sed turns \\ into \).
       sed -n \
-	"s/'/'\\\\''/g;
-	  s/^\\([_$as_cr_alnum]*_cv_[_$as_cr_alnum]*\\)=\\(.*\\)/\\1='\\2'/p"
+        "s/'/'\\\\''/g;
+    	  s/^\\([_$as_cr_alnum]*_cv_[_$as_cr_alnum]*\\)=\\(.*\\)/\\1='\\2'/p"
       ;;
     *)
       # `set' quotes correctly as required by POSIX, so do not add quotes.
       sed -n \
-	"s/^\\([_$as_cr_alnum]*_cv_[_$as_cr_alnum]*\\)=\\(.*\\)/\\1=\\2/p"
+        "s/^\\([_$as_cr_alnum]*_cv_[_$as_cr_alnum]*\\)=\\(.*\\)/\\1=\\2/p"
       ;;
     esac;
 } |
@@ -6689,9 +6911,90 @@ fi
 rm -f confcache
   exit 1
 fi
+
+# Extract the first word of "ps", so it can be a program name with args.
+set dummy ps; ac_word=$2
+echo "$as_me:$LINENO: checking for $ac_word" >&5
+echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
+if test "${ac_cv_path_PS+set}" = set; then
+  echo $ECHO_N "(cached) $ECHO_C" >&6
+else
+  case $PS in
+  [\\/]* | ?:[\\/]*)
+  ac_cv_path_PS="$PS" # Let the user override the test with a path.
+  ;;
+  *)
+  as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+for as_dir in $PATH
+do
+  IFS=$as_save_IFS
+  test -z "$as_dir" && as_dir=.
+  for ac_exec_ext in '' $ac_executable_extensions; do
+  if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
+    ac_cv_path_PS="$as_dir/$ac_word$ac_exec_ext"
+    echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+    break 2
+  fi
+done
+done
+
+  ;;
+esac
+fi
+PS=$ac_cv_path_PS
+
+if test -n "$PS"; then
+  echo "$as_me:$LINENO: result: $PS" >&5
+echo "${ECHO_T}$PS" >&6
+else
+  echo "$as_me:$LINENO: result: no" >&5
+echo "${ECHO_T}no" >&6
+fi
+
+echo "$as_me:$LINENO: checking for POSIX or BSD ps syntax" >&5
+echo $ECHO_N "checking for POSIX or BSD ps syntax... $ECHO_C" >&6
+if test "${ac_cv_prog_ps_syntax+set}" = set; then
+  echo $ECHO_N "(cached) $ECHO_C" >&6
+else
+
+	if $PS -ef -o rss > /dev/null 2>&1; then
+		ac_cv_prog_ps_ef=yes
+	else
+		ac_cv_prog_ps_ef=no
+	fi
+	if $PS ax -o rss > /dev/null 2>&1; then
+		ac_cv_prog_ps_ax=yes
+	else
+		ac_cv_prog_ps_ax=no
+	fi
+	if test "$ac_cv_prog_ps_ef" = yes; then
+		ac_cv_prog_ps_syntax=POSIX
+        else
+		if test "$ac_cv_prog_ps_ax" = yes; then
+			ac_cv_prog_ps_syntax=BSD
+		else
+			{ { echo "$as_me:$LINENO: error: Could not determine ps syntax" >&5
+echo "$as_me: error: Could not determine ps syntax" >&2;}
+   { (exit 1); exit 1; }; }
+		fi
+	fi
+
+fi
+echo "$as_me:$LINENO: result: $ac_cv_prog_ps_syntax" >&5
+echo "${ECHO_T}$ac_cv_prog_ps_syntax" >&6
+
+cat >>confdefs.h <<_ACEOF
+#define PS $PS
+_ACEOF
 
 
+cat >>confdefs.h <<_ACEOF
+#define PSTYPE $ac_cv_prog_ps_syntax
+_ACEOF
 
+
+
+
 # Check whether --with-mpi or --without-mpi was given.
 if test "${with_mpi+set}" = set; then
   withval="$with_mpi"
@@ -6789,6 +7092,7 @@ cat >conftest.$ac_ext <<_ACEOF
   ac_check_lib_save_LIBS=$LIBS
 LIBS="-lmpich  $LIBS"
 cat >conftest.$ac_ext <<_ACEOF
+#line $LINENO "configure"
 /* confdefs.h.  */
 _ACEOF
 cat confdefs.h >>conftest.$ac_ext
@@ -6812,25 +7116,15 @@ if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
 _ACEOF
 rm -f conftest.$ac_objext conftest$ac_exeext
 if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-  (eval $ac_link) 2>conftest.er1
+  (eval $ac_link) 2>&5
   ac_status=$?
-  grep -v '^ *+' conftest.er1 >conftest.err
-  rm -f conftest.er1
-  cat conftest.err >&5
   echo "$as_me:$LINENO: \$? = $ac_status" >&5
   (exit $ac_status); } &&
-	 { ac_try='test -z "$ac_c_werror_flag"
-			 || test ! -s conftest.err'
+         { ac_try='test -s conftest$ac_exeext'
   { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
   (eval $ac_try) 2>&5
   ac_status=$?
   echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; } &&
-	 { ac_try='test -s conftest$ac_exeext'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
   (exit $ac_status); }; }; then
   ac_cv_lib_mpich_MPI_Init=yes
 else
@@ -6839,8 +7133,7 @@ rm -f conftest.err conftest.$ac_objext \
 
 ac_cv_lib_mpich_MPI_Init=no
 fi
-rm -f conftest.err conftest.$ac_objext \
-      conftest$ac_exeext conftest.$ac_ext
+rm -f conftest.$ac_objext conftest$ac_exeext conftest.$ac_ext
 LIBS=$ac_check_lib_save_LIBS
 fi
 echo "$as_me:$LINENO: result: $ac_cv_lib_mpich_MPI_Init" >&5
@@ -6859,6 +7152,7 @@ cat >conftest.$ac_ext <<_ACEOF
   ac_check_lib_save_LIBS=$LIBS
 LIBS="-lmpi  $LIBS"
 cat >conftest.$ac_ext <<_ACEOF
+#line $LINENO "configure"
 /* confdefs.h.  */
 _ACEOF
 cat confdefs.h >>conftest.$ac_ext
@@ -6882,21 +7176,11 @@ if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
 _ACEOF
 rm -f conftest.$ac_objext conftest$ac_exeext
 if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-  (eval $ac_link) 2>conftest.er1
+  (eval $ac_link) 2>&5
   ac_status=$?
-  grep -v '^ *+' conftest.er1 >conftest.err
-  rm -f conftest.er1
-  cat conftest.err >&5
   echo "$as_me:$LINENO: \$? = $ac_status" >&5
   (exit $ac_status); } &&
-	 { ac_try='test -z "$ac_c_werror_flag"
-			 || test ! -s conftest.err'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; } &&
-	 { ac_try='test -s conftest$ac_exeext'
+         { ac_try='test -s conftest$ac_exeext'
   { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
   (eval $ac_try) 2>&5
   ac_status=$?
@@ -6909,8 +7193,7 @@ rm -f conftest.err conftest.$ac_objext \
 
 ac_cv_lib_mpi_MPI_Init=no
 fi
-rm -f conftest.err conftest.$ac_objext \
-      conftest$ac_exeext conftest.$ac_ext
+rm -f conftest.$ac_objext conftest$ac_exeext conftest.$ac_ext
 LIBS=$ac_check_lib_save_LIBS
 fi
 echo "$as_me:$LINENO: result: $ac_cv_lib_mpi_MPI_Init" >&5
@@ -6930,6 +7213,7 @@ cat >conftest.$ac_ext <<_ACEOF
   ac_check_lib_save_LIBS=$LIBS
 LIBS="-lmpi "-llam" $LIBS"
 cat >conftest.$ac_ext <<_ACEOF
+#line $LINENO "configure"
 /* confdefs.h.  */
 _ACEOF
 cat confdefs.h >>conftest.$ac_ext
@@ -6953,25 +7237,15 @@ if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
 _ACEOF
 rm -f conftest.$ac_objext conftest$ac_exeext
 if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-  (eval $ac_link) 2>conftest.er1
+  (eval $ac_link) 2>&5
   ac_status=$?
-  grep -v '^ *+' conftest.er1 >conftest.err
-  rm -f conftest.er1
-  cat conftest.err >&5
   echo "$as_me:$LINENO: \$? = $ac_status" >&5
   (exit $ac_status); } &&
-	 { ac_try='test -z "$ac_c_werror_flag"
-			 || test ! -s conftest.err'
+         { ac_try='test -s conftest$ac_exeext'
   { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
   (eval $ac_try) 2>&5
   ac_status=$?
   echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; } &&
-	 { ac_try='test -s conftest$ac_exeext'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
   (exit $ac_status); }; }; then
   ac_cv_lib_mpi_MPI_Init=yes
 else
@@ -6980,15 +7254,75 @@ rm -f conftest.err conftest.$ac_objext \
 
 ac_cv_lib_mpi_MPI_Init=no
 fi
-rm -f conftest.err conftest.$ac_objext \
-      conftest$ac_exeext conftest.$ac_ext
+rm -f conftest.$ac_objext conftest$ac_exeext conftest.$ac_ext
 LIBS=$ac_check_lib_save_LIBS
 fi
 echo "$as_me:$LINENO: result: $ac_cv_lib_mpi_MPI_Init" >&5
 echo "${ECHO_T}$ac_cv_lib_mpi_MPI_Init" >&6
 if test $ac_cv_lib_mpi_MPI_Init = yes; then
   MPI_LIB="-lmpi -llam"
+fi
+
+fi
+$as_unset ac_cv_lib_mpich_MPI_Init
+if test x = x"$MPI_LIB"; then
+        echo "$as_me:$LINENO: checking for MPI_Init in -lmpich" >&5
+echo $ECHO_N "checking for MPI_Init in -lmpich... $ECHO_C" >&6
+if test "${ac_cv_lib_mpich_MPI_Init+set}" = set; then
+  echo $ECHO_N "(cached) $ECHO_C" >&6
+else
+  ac_check_lib_save_LIBS=$LIBS
+LIBS="-lmpich "-lpmpich" $LIBS"
+cat >conftest.$ac_ext <<_ACEOF
+#line $LINENO "configure"
+/* confdefs.h.  */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h.  */
+
+/* Override any gcc2 internal prototype to avoid an error.  */
+#ifdef __cplusplus
+extern "C"
+#endif
+/* We use char because int might match the return type of a gcc2
+   builtin and then its argument prototype would still apply.  */
+char MPI_Init ();
+int
+main ()
+{
+MPI_Init ();
+  ;
+  return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext conftest$ac_exeext
+if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+  (eval $ac_link) 2>&5
+  ac_status=$?
+  echo "$as_me:$LINENO: \$? = $ac_status" >&5
+  (exit $ac_status); } &&
+         { ac_try='test -s conftest$ac_exeext'
+  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+  (eval $ac_try) 2>&5
+  ac_status=$?
+  echo "$as_me:$LINENO: \$? = $ac_status" >&5
+  (exit $ac_status); }; }; then
+  ac_cv_lib_mpich_MPI_Init=yes
+else
+  echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ac_cv_lib_mpich_MPI_Init=no
 fi
+rm -f conftest.$ac_objext conftest$ac_exeext conftest.$ac_ext
+LIBS=$ac_check_lib_save_LIBS
+fi
+echo "$as_me:$LINENO: result: $ac_cv_lib_mpich_MPI_Init" >&5
+echo "${ECHO_T}$ac_cv_lib_mpich_MPI_Init" >&6
+if test $ac_cv_lib_mpich_MPI_Init = yes; then
+  MPI_LIB="-lmpich -lpmpich"
+fi
 
 fi
 
@@ -7002,6 +7336,7 @@ cat >conftest.$ac_ext <<_ACEOF
   ac_check_lib_save_LIBS=$LIBS
 LIBS="-lmpi -llam -lpthread $LIBS"
 cat >conftest.$ac_ext <<_ACEOF
+#line $LINENO "configure"
 /* confdefs.h.  */
 _ACEOF
 cat confdefs.h >>conftest.$ac_ext
@@ -7025,25 +7360,15 @@ if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
 _ACEOF
 rm -f conftest.$ac_objext conftest$ac_exeext
 if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-  (eval $ac_link) 2>conftest.er1
+  (eval $ac_link) 2>&5
   ac_status=$?
-  grep -v '^ *+' conftest.er1 >conftest.err
-  rm -f conftest.er1
-  cat conftest.err >&5
   echo "$as_me:$LINENO: \$? = $ac_status" >&5
   (exit $ac_status); } &&
-	 { ac_try='test -z "$ac_c_werror_flag"
-			 || test ! -s conftest.err'
+         { ac_try='test -s conftest$ac_exeext'
   { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
   (eval $ac_try) 2>&5
   ac_status=$?
   echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; } &&
-	 { ac_try='test -s conftest$ac_exeext'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
   (exit $ac_status); }; }; then
   ac_cv_lib_mpi_MPI_Init=yes
 else
@@ -7052,8 +7377,7 @@ rm -f conftest.err conftest.$ac_objext \
 
 ac_cv_lib_mpi_MPI_Init=no
 fi
-rm -f conftest.err conftest.$ac_objext \
-      conftest$ac_exeext conftest.$ac_ext
+rm -f conftest.$ac_objext conftest$ac_exeext conftest.$ac_ext
 LIBS=$ac_check_lib_save_LIBS
 fi
 echo "$as_me:$LINENO: result: $ac_cv_lib_mpi_MPI_Init" >&5
@@ -7155,6 +7479,7 @@ cat >conftest.$ac_ext <<_ACEOF
   ac_check_lib_save_LIBS=$LIBS
 LIBS="-lsprng  $LIBS"
 cat >conftest.$ac_ext <<_ACEOF
+#line $LINENO "configure"
 /* confdefs.h.  */
 _ACEOF
 cat confdefs.h >>conftest.$ac_ext
@@ -7178,25 +7503,15 @@ if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
 _ACEOF
 rm -f conftest.$ac_objext conftest$ac_exeext
 if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-  (eval $ac_link) 2>conftest.er1
+  (eval $ac_link) 2>&5
   ac_status=$?
-  grep -v '^ *+' conftest.er1 >conftest.err
-  rm -f conftest.er1
-  cat conftest.err >&5
   echo "$as_me:$LINENO: \$? = $ac_status" >&5
   (exit $ac_status); } &&
-	 { ac_try='test -z "$ac_c_werror_flag"
-			 || test ! -s conftest.err'
+         { ac_try='test -s conftest$ac_exeext'
   { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
   (eval $ac_try) 2>&5
   ac_status=$?
   echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; } &&
-	 { ac_try='test -s conftest$ac_exeext'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
   (exit $ac_status); }; }; then
   ac_cv_lib_sprng_init_rng=yes
 else
@@ -7205,8 +7520,7 @@ rm -f conftest.err conftest.$ac_objext \
 
 ac_cv_lib_sprng_init_rng=no
 fi
-rm -f conftest.err conftest.$ac_objext \
-      conftest$ac_exeext conftest.$ac_ext
+rm -f conftest.$ac_objext conftest$ac_exeext conftest.$ac_ext
 LIBS=$ac_check_lib_save_LIBS
 fi
 echo "$as_me:$LINENO: result: $ac_cv_lib_sprng_init_rng" >&5
@@ -7282,6 +7596,7 @@ cat >conftest.$ac_ext <<_ACEOF
 echo "$as_me:$LINENO: checking mkl.h usability" >&5
 echo $ECHO_N "checking mkl.h usability... $ECHO_C" >&6
 cat >conftest.$ac_ext <<_ACEOF
+#line $LINENO "configure"
 /* confdefs.h.  */
 _ACEOF
 cat confdefs.h >>conftest.$ac_ext
@@ -7292,25 +7607,15 @@ if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
 _ACEOF
 rm -f conftest.$ac_objext
 if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-  (eval $ac_compile) 2>conftest.er1
+  (eval $ac_compile) 2>&5
   ac_status=$?
-  grep -v '^ *+' conftest.er1 >conftest.err
-  rm -f conftest.er1
-  cat conftest.err >&5
   echo "$as_me:$LINENO: \$? = $ac_status" >&5
   (exit $ac_status); } &&
-	 { ac_try='test -z "$ac_c_werror_flag"
-			 || test ! -s conftest.err'
+         { ac_try='test -s conftest.$ac_objext'
   { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
   (eval $ac_try) 2>&5
   ac_status=$?
   echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; } &&
-	 { ac_try='test -s conftest.$ac_objext'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
   (exit $ac_status); }; }; then
   ac_header_compiler=yes
 else
@@ -7319,7 +7624,7 @@ rm -f conftest.err conftest.$ac_objext conftest.$ac_ex
 
 ac_header_compiler=no
 fi
-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
+rm -f conftest.$ac_objext conftest.$ac_ext
 echo "$as_me:$LINENO: result: $ac_header_compiler" >&5
 echo "${ECHO_T}$ac_header_compiler" >&6
 
@@ -7327,6 +7632,7 @@ cat >conftest.$ac_ext <<_ACEOF
 echo "$as_me:$LINENO: checking mkl.h presence" >&5
 echo $ECHO_N "checking mkl.h presence... $ECHO_C" >&6
 cat >conftest.$ac_ext <<_ACEOF
+#line $LINENO "configure"
 /* confdefs.h.  */
 _ACEOF
 cat confdefs.h >>conftest.$ac_ext
@@ -7344,7 +7650,6 @@ if { (eval echo "$as_me:$LINENO: \"$ac_cpp conftest.$a
   (exit $ac_status); } >/dev/null; then
   if test -s conftest.err; then
     ac_cpp_err=$ac_c_preproc_warn_flag
-    ac_cpp_err=$ac_cpp_err$ac_c_werror_flag
   else
     ac_cpp_err=
   fi
@@ -7364,32 +7669,33 @@ case $ac_header_compiler:$ac_header_preproc:$ac_c_prep
 echo "${ECHO_T}$ac_header_preproc" >&6
 
 # So?  What about this header?
-case $ac_header_compiler:$ac_header_preproc:$ac_c_preproc_warn_flag in
-  yes:no: )
+case $ac_header_compiler:$ac_header_preproc in
+  yes:no )
     { echo "$as_me:$LINENO: WARNING: mkl.h: accepted by the compiler, rejected by the preprocessor!" >&5
 echo "$as_me: WARNING: mkl.h: accepted by the compiler, rejected by the preprocessor!" >&2;}
-    { echo "$as_me:$LINENO: WARNING: mkl.h: proceeding with the compiler's result" >&5
-echo "$as_me: WARNING: mkl.h: proceeding with the compiler's result" >&2;}
-    ac_header_preproc=yes
+    { echo "$as_me:$LINENO: WARNING: mkl.h: proceeding with the preprocessor's result" >&5
+echo "$as_me: WARNING: mkl.h: proceeding with the preprocessor's result" >&2;}
+    (
+      cat <<\_ASBOX
+## ------------------------------------ ##
+## Report this to bug-autoconf@gnu.org. ##
+## ------------------------------------ ##
+_ASBOX
+    ) |
+      sed "s/^/$as_me: WARNING:     /" >&2
     ;;
-  no:yes:* )
+  no:yes )
     { echo "$as_me:$LINENO: WARNING: mkl.h: present but cannot be compiled" >&5
 echo "$as_me: WARNING: mkl.h: present but cannot be compiled" >&2;}
-    { echo "$as_me:$LINENO: WARNING: mkl.h:     check for missing prerequisite headers?" >&5
-echo "$as_me: WARNING: mkl.h:     check for missing prerequisite headers?" >&2;}
-    { echo "$as_me:$LINENO: WARNING: mkl.h: see the Autoconf documentation" >&5
-echo "$as_me: WARNING: mkl.h: see the Autoconf documentation" >&2;}
-    { echo "$as_me:$LINENO: WARNING: mkl.h:     section \"Present But Cannot Be Compiled\"" >&5
-echo "$as_me: WARNING: mkl.h:     section \"Present But Cannot Be Compiled\"" >&2;}
+    { echo "$as_me:$LINENO: WARNING: mkl.h: check for missing prerequisite headers?" >&5
+echo "$as_me: WARNING: mkl.h: check for missing prerequisite headers?" >&2;}
     { echo "$as_me:$LINENO: WARNING: mkl.h: proceeding with the preprocessor's result" >&5
 echo "$as_me: WARNING: mkl.h: proceeding with the preprocessor's result" >&2;}
-    { echo "$as_me:$LINENO: WARNING: mkl.h: in the future, the compiler will take precedence" >&5
-echo "$as_me: WARNING: mkl.h: in the future, the compiler will take precedence" >&2;}
     (
       cat <<\_ASBOX
-## ------------------------------ ##
-## Report this to gezelter@nd.edu ##
-## ------------------------------ ##
+## ------------------------------------ ##
+## Report this to bug-autoconf@gnu.org. ##
+## ------------------------------------ ##
 _ASBOX
     ) |
       sed "s/^/$as_me: WARNING:     /" >&2
@@ -7416,6 +7722,7 @@ cat >conftest.$ac_ext <<_ACEOF
   ac_check_lib_save_LIBS=$LIBS
 LIBS="-lmkl  $LIBS"
 cat >conftest.$ac_ext <<_ACEOF
+#line $LINENO "configure"
 /* confdefs.h.  */
 _ACEOF
 cat confdefs.h >>conftest.$ac_ext
@@ -7439,25 +7746,15 @@ if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
 _ACEOF
 rm -f conftest.$ac_objext conftest$ac_exeext
 if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-  (eval $ac_link) 2>conftest.er1
+  (eval $ac_link) 2>&5
   ac_status=$?
-  grep -v '^ *+' conftest.er1 >conftest.err
-  rm -f conftest.er1
-  cat conftest.err >&5
   echo "$as_me:$LINENO: \$? = $ac_status" >&5
   (exit $ac_status); } &&
-	 { ac_try='test -z "$ac_c_werror_flag"
-			 || test ! -s conftest.err'
+         { ac_try='test -s conftest$ac_exeext'
   { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
   (eval $ac_try) 2>&5
   ac_status=$?
   echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; } &&
-	 { ac_try='test -s conftest$ac_exeext'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
   (exit $ac_status); }; }; then
   ac_cv_lib_mkl_vslNewStream=yes
 else
@@ -7466,8 +7763,7 @@ rm -f conftest.err conftest.$ac_objext \
 
 ac_cv_lib_mkl_vslNewStream=no
 fi
-rm -f conftest.err conftest.$ac_objext \
-      conftest$ac_exeext conftest.$ac_ext
+rm -f conftest.$ac_objext conftest$ac_exeext conftest.$ac_ext
 LIBS=$ac_check_lib_save_LIBS
 fi
 echo "$as_me:$LINENO: result: $ac_cv_lib_mkl_vslNewStream" >&5
@@ -7509,11 +7805,150 @@ fi;
 echo "${ECHO_T}no" >&6
 
 fi;
+
+
+
+# Check whether --enable-doxygen or --disable-doxygen was given.
+if test "${enable_doxygen+set}" = set; then
+  enableval="$enable_doxygen"
+
+fi;
+# Check whether --enable-dot or --disable-dot was given.
+if test "${enable_dot+set}" = set; then
+  enableval="$enable_dot"
+
+fi;
+# Check whether --enable-html-docs or --disable-html-docs was given.
+if test "${enable_html_docs+set}" = set; then
+  enableval="$enable_html_docs"
+
+else
+   enable_html_docs=yes
+fi;
+# Check whether --enable-latex-docs or --disable-latex-docs was given.
+if test "${enable_latex_docs+set}" = set; then
+  enableval="$enable_latex_docs"
+
+else
+   enable_latex_docs=no
+fi;
+if test "x$enable_doxygen" = xno; then
+        enable_doc=no
+else
+        # Extract the first word of "doxygen", so it can be a program name with args.
+set dummy doxygen; ac_word=$2
+echo "$as_me:$LINENO: checking for $ac_word" >&5
+echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
+if test "${ac_cv_path_DOXYGEN+set}" = set; then
+  echo $ECHO_N "(cached) $ECHO_C" >&6
+else
+  case $DOXYGEN in
+  [\\/]* | ?:[\\/]*)
+  ac_cv_path_DOXYGEN="$DOXYGEN" # Let the user override the test with a path.
+  ;;
+  *)
+  as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+for as_dir in $PATH
+do
+  IFS=$as_save_IFS
+  test -z "$as_dir" && as_dir=.
+  for ac_exec_ext in '' $ac_executable_extensions; do
+  if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
+    ac_cv_path_DOXYGEN="$as_dir/$ac_word$ac_exec_ext"
+    echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+    break 2
+  fi
+done
+done
 
+  ;;
+esac
+fi
+DOXYGEN=$ac_cv_path_DOXYGEN
 
+if test -n "$DOXYGEN"; then
+  echo "$as_me:$LINENO: result: $DOXYGEN" >&5
+echo "${ECHO_T}$DOXYGEN" >&6
+else
+  echo "$as_me:$LINENO: result: no" >&5
+echo "${ECHO_T}no" >&6
+fi
 
+        if test "x$DOXYGEN" = x; then
+                if test "x$enable_doxygen" = xyes; then
+                        { { echo "$as_me:$LINENO: error: could not find doxygen" >&5
+echo "$as_me: error: could not find doxygen" >&2;}
+   { (exit 1); exit 1; }; }
+                fi
+                enable_doc=no
+        else
+                enable_doc=yes
+                # Extract the first word of "dot", so it can be a program name with args.
+set dummy dot; ac_word=$2
+echo "$as_me:$LINENO: checking for $ac_word" >&5
+echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
+if test "${ac_cv_path_DOT+set}" = set; then
+  echo $ECHO_N "(cached) $ECHO_C" >&6
+else
+  case $DOT in
+  [\\/]* | ?:[\\/]*)
+  ac_cv_path_DOT="$DOT" # Let the user override the test with a path.
+  ;;
+  *)
+  as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+for as_dir in $PATH
+do
+  IFS=$as_save_IFS
+  test -z "$as_dir" && as_dir=.
+  for ac_exec_ext in '' $ac_executable_extensions; do
+  if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
+    ac_cv_path_DOT="$as_dir/$ac_word$ac_exec_ext"
+    echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+    break 2
+  fi
+done
+done
 
+  ;;
+esac
+fi
+DOT=$ac_cv_path_DOT
 
+if test -n "$DOT"; then
+  echo "$as_me:$LINENO: result: $DOT" >&5
+echo "${ECHO_T}$DOT" >&6
+else
+  echo "$as_me:$LINENO: result: no" >&5
+echo "${ECHO_T}no" >&6
+fi
+
+        fi
+fi
+
+if test "x$enable_doc" = xyes; then
+  DOC=1
+else
+  DOC=0
+fi
+
+
+if test x$DOT = x; then
+        if test "x$enable_dot" = xyes; then
+                { { echo "$as_me:$LINENO: error: could not find dot" >&5
+echo "$as_me: error: could not find dot" >&2;}
+   { (exit 1); exit 1; }; }
+        fi
+        enable_dot=no
+else
+        enable_dot=yes
+fi
+
+
+
+
+
+
+
 OBJEXT=".$OBJEXT"
 
 OOPSE=oopse
@@ -7537,8 +7972,6 @@ SUBDIRS="libBASS libmdtools src forceFields samples ut
 
 MKINSTALLDIRS=`pwd`/ac-tools/"shtool mkdir -p -f"
 
-SUBDIRS="libBASS libmdtools src forceFields samples utils utils/sysbuilder third-party "
-
 CFLAGS=${CFLAGS-""}
 CXXFLAGS=${CXXFLAGS-""}
 CPPFLAGS=${CPPFLAGS-""}
@@ -7572,11 +8005,12 @@ esac
 
 
 
-                    ac_config_headers="$ac_config_headers libBASS/config.h libmdtools/config.h"
 
-                                                                                                                                                                                                                            ac_config_files="$ac_config_files Makefile libBASS/Makefile libmdtools/Makefile src/Makefile utils/Makefile utils/sysbuilder/Makefile forceFields/Makefile samples/Makefile third-party/Makefile samples/alkane/Makefile samples/argon/Makefile samples/lipid/Makefile samples/minimizer/Makefile samples/metals/Makefile samples/water/Makefile samples/water/dimer/Makefile samples/water/spce/Makefile samples/water/ssd/Makefile samples/water/ssde/Makefile samples/water/tip4p/Makefile samples/water/tip3p_ice/Makefile samples/zcons/Makefile"
+          ac_config_headers="$ac_config_headers src/config.h"
 
+                    ac_config_files="$ac_config_files make/Makefile src/utils/Makefile"
 
+
 cat >confcache <<\_ACEOF
 # This file is a shell script that caches the results of configure
 # tests run on this system so they can be shared between configure
@@ -7605,13 +8039,13 @@ _ACEOF
       # `set' does not quote correctly, so add quotes (double-quote
       # substitution turns \\\\ into \\, and sed turns \\ into \).
       sed -n \
-	"s/'/'\\\\''/g;
-	  s/^\\([_$as_cr_alnum]*_cv_[_$as_cr_alnum]*\\)=\\(.*\\)/\\1='\\2'/p"
+        "s/'/'\\\\''/g;
+    	  s/^\\([_$as_cr_alnum]*_cv_[_$as_cr_alnum]*\\)=\\(.*\\)/\\1='\\2'/p"
       ;;
     *)
       # `set' quotes correctly as required by POSIX, so do not add quotes.
       sed -n \
-	"s/^\\([_$as_cr_alnum]*_cv_[_$as_cr_alnum]*\\)=\\(.*\\)/\\1=\\2/p"
+        "s/^\\([_$as_cr_alnum]*_cv_[_$as_cr_alnum]*\\)=\\(.*\\)/\\1=\\2/p"
       ;;
     esac;
 } |
@@ -7641,13 +8075,13 @@ if test "x$srcdir" = x.; then
 # trailing colons and then remove the whole line if VPATH becomes empty
 # (actually we leave an empty line to preserve line numbers).
 if test "x$srcdir" = x.; then
-  ac_vpsub='/^[	 ]*VPATH[	 ]*=/{
+  ac_vpsub='/^[ 	]*VPATH[ 	]*=/{
 s/:*\$(srcdir):*/:/;
 s/:*\${srcdir}:*/:/;
 s/:*@srcdir@:*/:/;
-s/^\([^=]*=[	 ]*\):*/\1/;
+s/^\([^=]*=[ 	]*\):*/\1/;
 s/:*$//;
-s/^[^=]*=[	 ]*$//;
+s/^[^=]*=[ 	]*$//;
 }'
 fi
 
@@ -7658,7 +8092,7 @@ for ac_i in : $LIBOBJS; do test "x$ac_i" = x: && conti
 for ac_i in : $LIBOBJS; do test "x$ac_i" = x: && continue
   # 1. Remove the extension, and $U if already installed.
   ac_i=`echo "$ac_i" |
-	 sed 's/\$U\././;s/\.o$//;s/\.obj$//'`
+         sed 's/\$U\././;s/\.o$//;s/\.obj$//'`
   # 2. Add them.
   ac_libobjs="$ac_libobjs $ac_i\$U.$ac_objext"
   ac_ltlibobjs="$ac_ltlibobjs $ac_i"'$U.lo'
@@ -7702,10 +8136,9 @@ DUALCASE=1; export DUALCASE # for MKS sh
 elif test -n "${BASH_VERSION+set}" && (set -o posix) >/dev/null 2>&1; then
   set -o posix
 fi
-DUALCASE=1; export DUALCASE # for MKS sh
 
 # Support unset when possible.
-if ( (MAIL=60; unset MAIL) || exit) >/dev/null 2>&1; then
+if (FOO=FOO; unset FOO) >/dev/null 2>&1; then
   as_unset=unset
 else
   as_unset=false
@@ -7724,7 +8157,7 @@ do
   LC_MEASUREMENT LC_MESSAGES LC_MONETARY LC_NAME LC_NUMERIC LC_PAPER \
   LC_TELEPHONE LC_TIME
 do
-  if (set +x; test -z "`(eval $as_var=C; export $as_var) 2>&1`"); then
+  if (set +x; test -n "`(eval $as_var=C; export $as_var) 2>&1`"); then
     eval $as_var=C; export $as_var
   else
     $as_unset $as_var
@@ -7903,17 +8336,16 @@ else
 if mkdir -p . 2>/dev/null; then
   as_mkdir_p=:
 else
-  test -d ./-p && rmdir ./-p
   as_mkdir_p=false
 fi
 
 as_executable_p="test -f"
 
 # Sed expression to map a string onto a valid CPP name.
-as_tr_cpp="eval sed 'y%*$as_cr_letters%P$as_cr_LETTERS%;s%[^_$as_cr_alnum]%_%g'"
+as_tr_cpp="sed y%*$as_cr_letters%P$as_cr_LETTERS%;s%[^_$as_cr_alnum]%_%g"
 
 # Sed expression to map a string onto a valid variable name.
-as_tr_sh="eval sed 'y%*+%pp%;s%[^_$as_cr_alnum]%_%g'"
+as_tr_sh="sed y%*+%pp%;s%[^_$as_cr_alnum]%_%g"
 
 
 # IFS
@@ -7939,8 +8371,8 @@ This file was extended by OOPSE $as_me 1.0, which was
 } >&5
 cat >&5 <<_CSEOF
 
-This file was extended by OOPSE $as_me 1.0, which was
-generated by GNU Autoconf 2.59.  Invocation command line was
+This file was extended by OOPSE $as_me 2.0, which was
+generated by GNU Autoconf 2.57.  Invocation command line was
 
   CONFIG_FILES    = $CONFIG_FILES
   CONFIG_HEADERS  = $CONFIG_HEADERS
@@ -7984,9 +8416,9 @@ Usage: $0 [OPTIONS] [FILE]...
   -d, --debug      don't remove temporary files
       --recheck    update $as_me by reconfiguring in the same conditions
   --file=FILE[:TEMPLATE]
-		   instantiate the configuration file FILE
+                   instantiate the configuration file FILE
   --header=FILE[:TEMPLATE]
-		   instantiate the configuration header FILE
+                   instantiate the configuration header FILE
 
 Configuration files:
 $config_files
@@ -8002,11 +8434,12 @@ OOPSE config.status 1.0
 
 cat >>$CONFIG_STATUS <<_ACEOF
 ac_cs_version="\\
-OOPSE config.status 1.0
-configured by $0, generated by GNU Autoconf 2.59,
+OOPSE config.status 2.0
+configured by $0, generated by GNU Autoconf 2.57,
   with options \\"`echo "$ac_configure_args" | sed 's/[\\""\`\$]/\\\\&/g'`\\"
 
-Copyright (C) 2003 Free Software Foundation, Inc.
+Copyright 1992, 1993, 1994, 1995, 1996, 1998, 1999, 2000, 2001
+Free Software Foundation, Inc.
 This config.status script is free software; the Free Software Foundation
 gives unlimited permission to copy, distribute and modify it."
 srcdir=$srcdir
@@ -8105,31 +8538,10 @@ do
 do
   case "$ac_config_target" in
   # Handling of arguments.
-  "Makefile" ) CONFIG_FILES="$CONFIG_FILES Makefile" ;;
-  "libBASS/Makefile" ) CONFIG_FILES="$CONFIG_FILES libBASS/Makefile" ;;
-  "libmdtools/Makefile" ) CONFIG_FILES="$CONFIG_FILES libmdtools/Makefile" ;;
-  "src/Makefile" ) CONFIG_FILES="$CONFIG_FILES src/Makefile" ;;
-  "utils/Makefile" ) CONFIG_FILES="$CONFIG_FILES utils/Makefile" ;;
-  "utils/sysbuilder/Makefile" ) CONFIG_FILES="$CONFIG_FILES utils/sysbuilder/Makefile" ;;
-  "forceFields/Makefile" ) CONFIG_FILES="$CONFIG_FILES forceFields/Makefile" ;;
-  "samples/Makefile" ) CONFIG_FILES="$CONFIG_FILES samples/Makefile" ;;
-  "third-party/Makefile" ) CONFIG_FILES="$CONFIG_FILES third-party/Makefile" ;;
-  "samples/alkane/Makefile" ) CONFIG_FILES="$CONFIG_FILES samples/alkane/Makefile" ;;
-  "samples/argon/Makefile" ) CONFIG_FILES="$CONFIG_FILES samples/argon/Makefile" ;;
-  "samples/lipid/Makefile" ) CONFIG_FILES="$CONFIG_FILES samples/lipid/Makefile" ;;
-  "samples/minimizer/Makefile" ) CONFIG_FILES="$CONFIG_FILES samples/minimizer/Makefile" ;;
-  "samples/metals/Makefile" ) CONFIG_FILES="$CONFIG_FILES samples/metals/Makefile" ;;
-  "samples/water/Makefile" ) CONFIG_FILES="$CONFIG_FILES samples/water/Makefile" ;;
-  "samples/water/dimer/Makefile" ) CONFIG_FILES="$CONFIG_FILES samples/water/dimer/Makefile" ;;
-  "samples/water/spce/Makefile" ) CONFIG_FILES="$CONFIG_FILES samples/water/spce/Makefile" ;;
-  "samples/water/ssd/Makefile" ) CONFIG_FILES="$CONFIG_FILES samples/water/ssd/Makefile" ;;
-  "samples/water/ssde/Makefile" ) CONFIG_FILES="$CONFIG_FILES samples/water/ssde/Makefile" ;;
-  "samples/water/tip4p/Makefile" ) CONFIG_FILES="$CONFIG_FILES samples/water/tip4p/Makefile" ;;
-  "samples/water/tip3p_ice/Makefile" ) CONFIG_FILES="$CONFIG_FILES samples/water/tip3p_ice/Makefile" ;;
-  "samples/zcons/Makefile" ) CONFIG_FILES="$CONFIG_FILES samples/zcons/Makefile" ;;
-  "utils/getopt.h" ) CONFIG_LINKS="$CONFIG_LINKS utils/getopt.h:utils/gnugetopt.h" ;;
-  "libBASS/config.h" ) CONFIG_HEADERS="$CONFIG_HEADERS libBASS/config.h" ;;
-  "libmdtools/config.h" ) CONFIG_HEADERS="$CONFIG_HEADERS libmdtools/config.h" ;;
+  "make/Makefile" ) CONFIG_FILES="$CONFIG_FILES make/Makefile" ;;
+  "src/utils/Makefile" ) CONFIG_FILES="$CONFIG_FILES src/utils/Makefile" ;;
+  "src/getopt.h" ) CONFIG_LINKS="$CONFIG_LINKS src/getopt.h:src/utils/gnugetopt.h" ;;
+  "src/config.h" ) CONFIG_HEADERS="$CONFIG_HEADERS src/config.h" ;;
   *) { { echo "$as_me:$LINENO: error: invalid argument: $ac_config_target" >&5
 echo "$as_me: error: invalid argument: $ac_config_target" >&2;}
    { (exit 1); exit 1; }; };;
@@ -8249,6 +8661,7 @@ s,@CPP@,$CPP,;t t
 s,@F90_WORK_FILES_ARG@,$F90_WORK_FILES_ARG,;t t
 s,@MODDIRFLAG@,$MODDIRFLAG,;t t
 s,@F90MODINCSPEC@,$F90MODINCSPEC,;t t
+s,@F90_MODULE_NAMES@,$F90_MODULE_NAMES,;t t
 s,@CPP@,$CPP,;t t
 s,@EGREP@,$EGREP,;t t
 s,@LIBOBJS@,$LIBOBJS,;t t
@@ -8264,6 +8677,7 @@ s,@MPI_LIB_DIR@,$MPI_LIB_DIR,;t t
 s,@LEXLIB@,$LEXLIB,;t t
 s,@LEX_OUTPUT_ROOT@,$LEX_OUTPUT_ROOT,;t t
 s,@AR@,$AR,;t t
+s,@PS@,$PS,;t t
 s,@MPI_LIB_DIR@,$MPI_LIB_DIR,;t t
 s,@MPI_INC_DIR@,$MPI_INC_DIR,;t t
 s,@MPI_F90_INC@,$MPI_F90_INC,;t t
@@ -8278,6 +8692,12 @@ s,@BATEXT@,$BATEXT,;t t
 s,@MKL_LIB@,$MKL_LIB,;t t
 s,@MKL_INC@,$MKL_INC,;t t
 s,@HAVE_MKL@,$HAVE_MKL,;t t
+s,@DOXYGEN@,$DOXYGEN,;t t
+s,@DOT@,$DOT,;t t
+s,@DOC@,$DOC,;t t
+s,@enable_dot@,$enable_dot,;t t
+s,@enable_html_docs@,$enable_html_docs,;t t
+s,@enable_latex_docs@,$enable_latex_docs,;t t
 s,@BATEXT@,$BATEXT,;t t
 s,@MKINSTALLDIRS@,$MKINSTALLDIRS,;t t
 s,@OOPSE@,$OOPSE,;t t
@@ -8314,9 +8734,9 @@ _ACEOF
       (echo ':t
   /@[a-zA-Z_][a-zA-Z_0-9]*@/!b' && cat $tmp/subs.frag) >$tmp/subs-$ac_sed_frag.sed
       if test -z "$ac_sed_cmds"; then
-	ac_sed_cmds="sed -f $tmp/subs-$ac_sed_frag.sed"
+  	ac_sed_cmds="sed -f $tmp/subs-$ac_sed_frag.sed"
       else
-	ac_sed_cmds="$ac_sed_cmds | sed -f $tmp/subs-$ac_sed_frag.sed"
+  	ac_sed_cmds="$ac_sed_cmds | sed -f $tmp/subs-$ac_sed_frag.sed"
       fi
       ac_sed_frag=`expr $ac_sed_frag + 1`
       ac_beg=$ac_end
@@ -8334,21 +8754,21 @@ for ac_file in : $CONFIG_FILES; do test "x$ac_file" = 
   # Support "outfile[:infile[:infile...]]", defaulting infile="outfile.in".
   case $ac_file in
   - | *:- | *:-:* ) # input from stdin
-	cat >$tmp/stdin
-	ac_file_in=`echo "$ac_file" | sed 's,[^:]*:,,'`
-	ac_file=`echo "$ac_file" | sed 's,:.*,,'` ;;
+        cat >$tmp/stdin
+        ac_file_in=`echo "$ac_file" | sed 's,[^:]*:,,'`
+        ac_file=`echo "$ac_file" | sed 's,:.*,,'` ;;
   *:* ) ac_file_in=`echo "$ac_file" | sed 's,[^:]*:,,'`
-	ac_file=`echo "$ac_file" | sed 's,:.*,,'` ;;
+        ac_file=`echo "$ac_file" | sed 's,:.*,,'` ;;
   * )   ac_file_in=$ac_file.in ;;
   esac
 
   # Compute @srcdir@, @top_srcdir@, and @INSTALL@ for subdirectories.
   ac_dir=`(dirname "$ac_file") 2>/dev/null ||
 $as_expr X"$ac_file" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
-	 X"$ac_file" : 'X\(//\)[^/]' \| \
-	 X"$ac_file" : 'X\(//\)$' \| \
-	 X"$ac_file" : 'X\(/\)' \| \
-	 .     : '\(.\)' 2>/dev/null ||
+         X"$ac_file" : 'X\(//\)[^/]' \| \
+         X"$ac_file" : 'X\(//\)$' \| \
+         X"$ac_file" : 'X\(/\)' \| \
+         .     : '\(.\)' 2>/dev/null ||
 echo X"$ac_file" |
     sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{ s//\1/; q; }
   	  /^X\(\/\/\)[^/].*/{ s//\1/; q; }
@@ -8364,10 +8784,10 @@ $as_expr X"$as_dir" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| 
       as_dirs="$as_dir $as_dirs"
       as_dir=`(dirname "$as_dir") 2>/dev/null ||
 $as_expr X"$as_dir" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
-	 X"$as_dir" : 'X\(//\)[^/]' \| \
-	 X"$as_dir" : 'X\(//\)$' \| \
-	 X"$as_dir" : 'X\(/\)' \| \
-	 .     : '\(.\)' 2>/dev/null ||
+         X"$as_dir" : 'X\(//\)[^/]' \| \
+         X"$as_dir" : 'X\(//\)$' \| \
+         X"$as_dir" : 'X\(/\)' \| \
+         .     : '\(.\)' 2>/dev/null ||
 echo X"$as_dir" |
     sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{ s//\1/; q; }
   	  /^X\(\/\/\)[^/].*/{ s//\1/; q; }
@@ -8405,45 +8825,12 @@ esac
     ac_srcdir=$ac_top_builddir$srcdir$ac_dir_suffix
     ac_top_srcdir=$ac_top_builddir$srcdir ;;
 esac
-
-# Do not use `cd foo && pwd` to compute absolute paths, because
-# the directories may not exist.
-case `pwd` in
-.) ac_abs_builddir="$ac_dir";;
-*)
-  case "$ac_dir" in
-  .) ac_abs_builddir=`pwd`;;
-  [\\/]* | ?:[\\/]* ) ac_abs_builddir="$ac_dir";;
-  *) ac_abs_builddir=`pwd`/"$ac_dir";;
-  esac;;
-esac
-case $ac_abs_builddir in
-.) ac_abs_top_builddir=${ac_top_builddir}.;;
-*)
-  case ${ac_top_builddir}. in
-  .) ac_abs_top_builddir=$ac_abs_builddir;;
-  [\\/]* | ?:[\\/]* ) ac_abs_top_builddir=${ac_top_builddir}.;;
-  *) ac_abs_top_builddir=$ac_abs_builddir/${ac_top_builddir}.;;
-  esac;;
-esac
-case $ac_abs_builddir in
-.) ac_abs_srcdir=$ac_srcdir;;
-*)
-  case $ac_srcdir in
-  .) ac_abs_srcdir=$ac_abs_builddir;;
-  [\\/]* | ?:[\\/]* ) ac_abs_srcdir=$ac_srcdir;;
-  *) ac_abs_srcdir=$ac_abs_builddir/$ac_srcdir;;
-  esac;;
-esac
-case $ac_abs_builddir in
-.) ac_abs_top_srcdir=$ac_top_srcdir;;
-*)
-  case $ac_top_srcdir in
-  .) ac_abs_top_srcdir=$ac_abs_builddir;;
-  [\\/]* | ?:[\\/]* ) ac_abs_top_srcdir=$ac_top_srcdir;;
-  *) ac_abs_top_srcdir=$ac_abs_builddir/$ac_top_srcdir;;
-  esac;;
-esac
+# Don't blindly perform a `cd "$ac_dir"/$ac_foo && pwd` since $ac_foo can be
+# absolute.
+ac_abs_builddir=`cd "$ac_dir" && cd $ac_builddir && pwd`
+ac_abs_top_builddir=`cd "$ac_dir" && cd ${ac_top_builddir}. && pwd`
+ac_abs_srcdir=`cd "$ac_dir" && cd $ac_srcdir && pwd`
+ac_abs_top_srcdir=`cd "$ac_dir" && cd $ac_top_srcdir && pwd`
 
 
   case $INSTALL in
@@ -8465,7 +8852,7 @@ echo "$as_me: creating $ac_file" >&6;}
     configure_input="$ac_file.  "
   fi
   configure_input=$configure_input"Generated from `echo $ac_file_in |
-				     sed 's,.*/,,'` by configure."
+                                     sed 's,.*/,,'` by configure."
 
   # First look for the input files in the build tree, otherwise in the
   # src tree.
@@ -8474,24 +8861,24 @@ echo "$as_me: creating $ac_file" >&6;}
       case $f in
       -) echo $tmp/stdin ;;
       [\\/$]*)
-	 # Absolute (can't be DOS-style, as IFS=:)
-	 test -f "$f" || { { echo "$as_me:$LINENO: error: cannot find input file: $f" >&5
+         # Absolute (can't be DOS-style, as IFS=:)
+         test -f "$f" || { { echo "$as_me:$LINENO: error: cannot find input file: $f" >&5
 echo "$as_me: error: cannot find input file: $f" >&2;}
    { (exit 1); exit 1; }; }
-	 echo "$f";;
+         echo $f;;
       *) # Relative
-	 if test -f "$f"; then
-	   # Build tree
-	   echo "$f"
-	 elif test -f "$srcdir/$f"; then
-	   # Source tree
-	   echo "$srcdir/$f"
-	 else
-	   # /dev/null tree
-	   { { echo "$as_me:$LINENO: error: cannot find input file: $f" >&5
+         if test -f "$f"; then
+           # Build tree
+           echo $f
+         elif test -f "$srcdir/$f"; then
+           # Source tree
+           echo $srcdir/$f
+         else
+           # /dev/null tree
+           { { echo "$as_me:$LINENO: error: cannot find input file: $f" >&5
 echo "$as_me: error: cannot find input file: $f" >&2;}
    { (exit 1); exit 1; }; }
-	 fi;;
+         fi;;
       esac
     done` || { (exit 1); exit 1; }
 _ACEOF
@@ -8533,12 +8920,12 @@ ac_dA='s,^\([	 ]*\)#\([	 ]*define[	 ][	 ]*\)'
 # NAME is the cpp macro being defined and VALUE is the value it is being given.
 #
 # ac_d sets the value in "#define NAME VALUE" lines.
-ac_dA='s,^\([	 ]*\)#\([	 ]*define[	 ][	 ]*\)'
-ac_dB='[	 ].*$,\1#\2'
+ac_dA='s,^\([ 	]*\)#\([ 	]*define[ 	][ 	]*\)'
+ac_dB='[ 	].*$,\1#\2'
 ac_dC=' '
 ac_dD=',;t'
 # ac_u turns "#undef NAME" without trailing blanks into "#define NAME VALUE".
-ac_uA='s,^\([	 ]*\)#\([	 ]*\)undef\([	 ][	 ]*\)'
+ac_uA='s,^\([ 	]*\)#\([ 	]*\)undef\([ 	][ 	]*\)'
 ac_uB='$,\1#\2define\3'
 ac_uC=' '
 ac_uD=',;t'
@@ -8547,11 +8934,11 @@ for ac_file in : $CONFIG_HEADERS; do test "x$ac_file" 
   # Support "outfile[:infile[:infile...]]", defaulting infile="outfile.in".
   case $ac_file in
   - | *:- | *:-:* ) # input from stdin
-	cat >$tmp/stdin
-	ac_file_in=`echo "$ac_file" | sed 's,[^:]*:,,'`
-	ac_file=`echo "$ac_file" | sed 's,:.*,,'` ;;
+        cat >$tmp/stdin
+        ac_file_in=`echo "$ac_file" | sed 's,[^:]*:,,'`
+        ac_file=`echo "$ac_file" | sed 's,:.*,,'` ;;
   *:* ) ac_file_in=`echo "$ac_file" | sed 's,[^:]*:,,'`
-	ac_file=`echo "$ac_file" | sed 's,:.*,,'` ;;
+        ac_file=`echo "$ac_file" | sed 's,:.*,,'` ;;
   * )   ac_file_in=$ac_file.in ;;
   esac
 
@@ -8565,29 +8952,28 @@ echo "$as_me: creating $ac_file" >&6;}
       case $f in
       -) echo $tmp/stdin ;;
       [\\/$]*)
-	 # Absolute (can't be DOS-style, as IFS=:)
-	 test -f "$f" || { { echo "$as_me:$LINENO: error: cannot find input file: $f" >&5
+         # Absolute (can't be DOS-style, as IFS=:)
+         test -f "$f" || { { echo "$as_me:$LINENO: error: cannot find input file: $f" >&5
 echo "$as_me: error: cannot find input file: $f" >&2;}
    { (exit 1); exit 1; }; }
-	 # Do quote $f, to prevent DOS paths from being IFS'd.
-	 echo "$f";;
+         echo $f;;
       *) # Relative
-	 if test -f "$f"; then
-	   # Build tree
-	   echo "$f"
-	 elif test -f "$srcdir/$f"; then
-	   # Source tree
-	   echo "$srcdir/$f"
-	 else
-	   # /dev/null tree
-	   { { echo "$as_me:$LINENO: error: cannot find input file: $f" >&5
+         if test -f "$f"; then
+           # Build tree
+           echo $f
+         elif test -f "$srcdir/$f"; then
+           # Source tree
+           echo $srcdir/$f
+         else
+           # /dev/null tree
+           { { echo "$as_me:$LINENO: error: cannot find input file: $f" >&5
 echo "$as_me: error: cannot find input file: $f" >&2;}
    { (exit 1); exit 1; }; }
-	 fi;;
+         fi;;
       esac
     done` || { (exit 1); exit 1; }
   # Remove the trailing spaces.
-  sed 's/[	 ]*$//' $ac_file_inputs >$tmp/in
+  sed 's/[ 	]*$//' $ac_file_inputs >$tmp/in
 
 _ACEOF
 
@@ -8610,9 +8996,9 @@ s,^[	 ]*#[	 ]*define[	 ][	 ]*\([^	 (][^	 (]*\)\(([^)]*
 s,[\\$`],\\&,g
 t clear
 : clear
-s,^[	 ]*#[	 ]*define[	 ][	 ]*\([^	 (][^	 (]*\)\(([^)]*)\)[	 ]*\(.*\)$,${ac_dA}\1${ac_dB}\1\2${ac_dC}\3${ac_dD},gp
+s,^[ 	]*#[ 	]*define[ 	][ 	]*\([^ 	(][^ 	(]*\)\(([^)]*)\)[ 	]*\(.*\)$,${ac_dA}\1${ac_dB}\1\2${ac_dC}\3${ac_dD},gp
 t end
-s,^[	 ]*#[	 ]*define[	 ][	 ]*\([^	 ][^	 ]*\)[	 ]*\(.*\)$,${ac_dA}\1${ac_dB}\1${ac_dC}\2${ac_dD},gp
+s,^[ 	]*#[ 	]*define[ 	][ 	]*\([^ 	][^ 	]*\)[ 	]*\(.*\)$,${ac_dA}\1${ac_dB}\1${ac_dC}\2${ac_dD},gp
 : end
 _ACEOF
 # If some macros were called several times there might be several times
@@ -8626,13 +9012,13 @@ s,^[	 ]*#[	 ]*undef[	 ][	 ]*[a-zA-Z_][a-zA-Z_0-9]*,/* 
 # example, in the case of _POSIX_SOURCE, which is predefined and required
 # on some systems where configure will not decide to define it.
 cat >>conftest.undefs <<\_ACEOF
-s,^[	 ]*#[	 ]*undef[	 ][	 ]*[a-zA-Z_][a-zA-Z_0-9]*,/* & */,
+s,^[ 	]*#[ 	]*undef[ 	][ 	]*[a-zA-Z_][a-zA-Z_0-9]*,/* & */,
 _ACEOF
 
 # Break up conftest.defines because some shells have a limit on the size
 # of here documents, and old seds have small limits too (100 cmds).
 echo '  # Handle all the #define templates only if necessary.' >>$CONFIG_STATUS
-echo '  if grep "^[	 ]*#[	 ]*define" $tmp/in >/dev/null; then' >>$CONFIG_STATUS
+echo '  if grep "^[ 	]*#[ 	]*define" $tmp/in >/dev/null; then' >>$CONFIG_STATUS
 echo '  # If there are no defines, we may have an empty if/fi' >>$CONFIG_STATUS
 echo '  :' >>$CONFIG_STATUS
 rm -f conftest.tail
@@ -8641,7 +9027,7 @@ do
   # Write a limited-size here document to $tmp/defines.sed.
   echo '  cat >$tmp/defines.sed <<CEOF' >>$CONFIG_STATUS
   # Speed up: don't consider the non `#define' lines.
-  echo '/^[	 ]*#[	 ]*define/!b' >>$CONFIG_STATUS
+  echo '/^[ 	]*#[ 	]*define/!b' >>$CONFIG_STATUS
   # Work around the forget-to-reset-the-flag bug.
   echo 't clr' >>$CONFIG_STATUS
   echo ': clr' >>$CONFIG_STATUS
@@ -8668,7 +9054,7 @@ do
   # Write a limited-size here document to $tmp/undefs.sed.
   echo '  cat >$tmp/undefs.sed <<CEOF' >>$CONFIG_STATUS
   # Speed up: don't consider the non `#undef'
-  echo '/^[	 ]*#[	 ]*undef/!b' >>$CONFIG_STATUS
+  echo '/^[ 	]*#[ 	]*undef/!b' >>$CONFIG_STATUS
   # Work around the forget-to-reset-the-flag bug.
   echo 't clr' >>$CONFIG_STATUS
   echo ': clr' >>$CONFIG_STATUS
@@ -8702,10 +9088,10 @@ $as_expr X"$ac_file" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \|
     else
       ac_dir=`(dirname "$ac_file") 2>/dev/null ||
 $as_expr X"$ac_file" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
-	 X"$ac_file" : 'X\(//\)[^/]' \| \
-	 X"$ac_file" : 'X\(//\)$' \| \
-	 X"$ac_file" : 'X\(/\)' \| \
-	 .     : '\(.\)' 2>/dev/null ||
+         X"$ac_file" : 'X\(//\)[^/]' \| \
+         X"$ac_file" : 'X\(//\)$' \| \
+         X"$ac_file" : 'X\(/\)' \| \
+         .     : '\(.\)' 2>/dev/null ||
 echo X"$ac_file" |
     sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{ s//\1/; q; }
   	  /^X\(\/\/\)[^/].*/{ s//\1/; q; }
@@ -8721,10 +9107,10 @@ $as_expr X"$as_dir" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| 
       as_dirs="$as_dir $as_dirs"
       as_dir=`(dirname "$as_dir") 2>/dev/null ||
 $as_expr X"$as_dir" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
-	 X"$as_dir" : 'X\(//\)[^/]' \| \
-	 X"$as_dir" : 'X\(//\)$' \| \
-	 X"$as_dir" : 'X\(/\)' \| \
-	 .     : '\(.\)' 2>/dev/null ||
+         X"$as_dir" : 'X\(//\)[^/]' \| \
+         X"$as_dir" : 'X\(//\)$' \| \
+         X"$as_dir" : 'X\(/\)' \| \
+         .     : '\(.\)' 2>/dev/null ||
 echo X"$as_dir" |
     sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{ s//\1/; q; }
   	  /^X\(\/\/\)[^/].*/{ s//\1/; q; }
@@ -8769,10 +9155,10 @@ $as_expr X"$ac_dest" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \|
   # Make relative symlinks.
   ac_dest_dir=`(dirname "$ac_dest") 2>/dev/null ||
 $as_expr X"$ac_dest" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
-	 X"$ac_dest" : 'X\(//\)[^/]' \| \
-	 X"$ac_dest" : 'X\(//\)$' \| \
-	 X"$ac_dest" : 'X\(/\)' \| \
-	 .     : '\(.\)' 2>/dev/null ||
+         X"$ac_dest" : 'X\(//\)[^/]' \| \
+         X"$ac_dest" : 'X\(//\)$' \| \
+         X"$ac_dest" : 'X\(/\)' \| \
+         .     : '\(.\)' 2>/dev/null ||
 echo X"$ac_dest" |
     sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{ s//\1/; q; }
   	  /^X\(\/\/\)[^/].*/{ s//\1/; q; }
@@ -8788,10 +9174,10 @@ $as_expr X"$as_dir" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| 
       as_dirs="$as_dir $as_dirs"
       as_dir=`(dirname "$as_dir") 2>/dev/null ||
 $as_expr X"$as_dir" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
-	 X"$as_dir" : 'X\(//\)[^/]' \| \
-	 X"$as_dir" : 'X\(//\)$' \| \
-	 X"$as_dir" : 'X\(/\)' \| \
-	 .     : '\(.\)' 2>/dev/null ||
+         X"$as_dir" : 'X\(//\)[^/]' \| \
+         X"$as_dir" : 'X\(//\)$' \| \
+         X"$as_dir" : 'X\(/\)' \| \
+         .     : '\(.\)' 2>/dev/null ||
 echo X"$as_dir" |
     sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{ s//\1/; q; }
   	  /^X\(\/\/\)[^/].*/{ s//\1/; q; }
@@ -8829,47 +9215,14 @@ esac
     ac_srcdir=$ac_top_builddir$srcdir$ac_dir_suffix
     ac_top_srcdir=$ac_top_builddir$srcdir ;;
 esac
+# Don't blindly perform a `cd "$ac_dest_dir"/$ac_foo && pwd` since $ac_foo can be
+# absolute.
+ac_abs_builddir=`cd "$ac_dest_dir" && cd $ac_builddir && pwd`
+ac_abs_top_builddir=`cd "$ac_dest_dir" && cd ${ac_top_builddir}. && pwd`
+ac_abs_srcdir=`cd "$ac_dest_dir" && cd $ac_srcdir && pwd`
+ac_abs_top_srcdir=`cd "$ac_dest_dir" && cd $ac_top_srcdir && pwd`
 
-# Do not use `cd foo && pwd` to compute absolute paths, because
-# the directories may not exist.
-case `pwd` in
-.) ac_abs_builddir="$ac_dest_dir";;
-*)
-  case "$ac_dest_dir" in
-  .) ac_abs_builddir=`pwd`;;
-  [\\/]* | ?:[\\/]* ) ac_abs_builddir="$ac_dest_dir";;
-  *) ac_abs_builddir=`pwd`/"$ac_dest_dir";;
-  esac;;
-esac
-case $ac_abs_builddir in
-.) ac_abs_top_builddir=${ac_top_builddir}.;;
-*)
-  case ${ac_top_builddir}. in
-  .) ac_abs_top_builddir=$ac_abs_builddir;;
-  [\\/]* | ?:[\\/]* ) ac_abs_top_builddir=${ac_top_builddir}.;;
-  *) ac_abs_top_builddir=$ac_abs_builddir/${ac_top_builddir}.;;
-  esac;;
-esac
-case $ac_abs_builddir in
-.) ac_abs_srcdir=$ac_srcdir;;
-*)
-  case $ac_srcdir in
-  .) ac_abs_srcdir=$ac_abs_builddir;;
-  [\\/]* | ?:[\\/]* ) ac_abs_srcdir=$ac_srcdir;;
-  *) ac_abs_srcdir=$ac_abs_builddir/$ac_srcdir;;
-  esac;;
-esac
-case $ac_abs_builddir in
-.) ac_abs_top_srcdir=$ac_top_srcdir;;
-*)
-  case $ac_top_srcdir in
-  .) ac_abs_top_srcdir=$ac_abs_builddir;;
-  [\\/]* | ?:[\\/]* ) ac_abs_top_srcdir=$ac_top_srcdir;;
-  *) ac_abs_top_srcdir=$ac_abs_builddir/$ac_top_srcdir;;
-  esac;;
-esac
 
-
   case $srcdir in
   [\\/$]* | ?:[\\/]* ) ac_rel_source=$srcdir/$ac_source ;;
       *) ac_rel_source=$ac_top_builddir$srcdir/$ac_source ;;