ViewVC Help
View File | Revision Log | Show Annotations | View Changeset | Root Listing
root/group/trunk/OOPSE-3.0/forceFields/DUFF2.frc
Revision: 2396
Committed: Wed Oct 26 23:30:23 2005 UTC (18 years, 8 months ago) by chrisfen
File size: 11664 byte(s)
Log Message:
added a test atom type

File Contents

# Content
1 // This is the forcefield file for the Dipolar Unified-atom Force Field (DUFF)
2 //
3 // The sections are divided into AtomTypes
4 //
5 //any parameters (but not all) are derived from the TRAPPE force field
6 // of Siepmann's group.
7 begin AtomTypes
8 //Name mass (amu)
9 CH4 16.05
10 CH3 15.04
11 CH2 14.03
12 CH 13.02
13 DIP 9.00764
14 SSD 18.0153
15 SSD1 18.0153
16 SSD_E 18.0153
17 SSD_RF 18.0153
18 TAP 18.0153
19 O_DIP3P 15.9994
20 O_TIP3P 15.9994
21 O_TIP4P 15.9994
22 O_TIP4P-Ew 15.9994
23 O_TIP5P 15.9994
24 O_SPCE 15.9994
25 O_SPC 15.9994
26 H_DIP3P 1.0079
27 H_TIP3P 1.0079
28 H_TIP4P 1.0079
29 H_TIP4P-Ew 1.0079
30 H_TIP5P 1.0079
31 H_SPCE 1.0079
32 H_SPC 1.0079
33 EP_TIP4P 0.0
34 EP_TIP4P-Ew 0.0
35 EP_TIP5P 0.0
36 HEAD 196
37 TB1 14.03
38 TE1 15.04
39 TB2 21.05
40 TE2 22.56
41 TB3 28.06
42 TE3 30.08
43 H 1.00794
44 He 4.002602
45 C 12.0107
46 N 14.00674
47 O 15.9994
48 F 18.9984032
49 Ne 20.1797
50 S 32.066
51 Cl 35.4527
52 Cl- 35.4527
53 Na+ 22.98977
54 Ar 39.948
55 Br 79.904
56 Kr 83.80
57 U 1.00
58 GBPaper 48.0428
59 linear 48.0428
60 Pchg+ 5.000
61 Pchg- 5.000
62 PDIP 10.000
63 end AtomTypes
64
65 begin DirectionalAtomTypes
66 //Name I_xx I_yy I_zz (All moments in (amu*Ang^2)
67 H_DIP3P 0 0 0
68 DIP 0.8202 0.8202 0
69 SSD 1.7696 0.6145 1.1550
70 SSD1 1.7696 0.6145 1.1550
71 SSD_E 1.7696 0.6145 1.1550
72 SSD_RF 1.7696 0.6145 1.1550
73 TAP 1.7696 0.6145 1.1550
74 HEAD 1125 1125 250
75 GBPaper 86.477 86.477 0
76 linear 86.477 86.477 0
77 PDIP 10.0 10.0 0
78 end DirectionalAtomTypes
79
80 begin GayBerneAtomTypes
81 //Name Sigma l2b_ratio eps eps_ratio mu nu
82 GBPaper 3.35 3.0 0.774729 0.2 2.0 1.0
83 linear 2.8104 3.555721 0.774729 0.150814 2.0 1.0
84 end GayBerneAtomTypes
85
86 begin LennardJonesAtomTypes
87 //Name epsilon sigma
88 DIP 0.038025 3.12
89 SSD 0.152 3.051
90 SSD1 0.152 3.016
91 SSD_E 0.152 3.035
92 SSD_RF 0.152 3.019
93 TAP 0.152 2.9
94 O_DIP3P 0.1521 3.15061
95 O_TIP3P 0.1521 3.15061
96 O_TIP4P 0.1550 3.15365
97 O_TIP4P-Ew 0.16275 3.16435
98 O_TIP5P 0.16 3.12
99 O_SPCE 0.15532 3.16549
100 O_SPC 0.15532 3.16549
101 CH4 0.279 3.73
102 CH3 0.185 3.75
103 CH2 0.0866 3.95
104 CH 0.0189 4.68
105 HEAD 0.185 0.75
106 TB1 0.0866 4.0
107 TE1 0.185 4.0
108 TB2 0.25 6.0
109 TE2 0.5 6.0
110 TB3 0.5 8.0
111 TE3 0.75 8.0
112 H 0.017090056482 2.81
113 He 0.020269601874 2.28
114 C 0.101745452544 3.35
115 N 0.074123151951 3.31
116 O 0.122412497592 2.95
117 F 0.104924997936 2.83
118 Ne 0.09339914589 2.72
119 S 0.36366050421 3.52
120 Cl 0.344781953445 3.35
121 Cl- 0.100 4.445
122 Na+ 0.118 2.579
123 Ar 0.238068461226 3.41
124 Br 0.511111921764 3.54
125 Kr 0.32590340268 3.83
126 U 1.0 1.0
127 Pchg+ 0.1 3.0
128 Pchg- 0.1 3.0
129 PDIP 0.15 5.0
130 end LennardJonesAtomTypes
131
132 begin ChargeAtomTypes
133 // Name charge
134 O_TIP3P -0.834
135 O_SPCE -0.8476
136 O_SPC -0.82
137 H_TIP3P 0.417
138 H_TIP4P 0.520
139 H_TIP4P-Ew 0.52422
140 H_TIP5P 0.241
141 H_SPCE 0.4238
142 H_SPC 0.42
143 EP_TIP4P -1.040
144 EP_TIP4P-Ew -1.04844
145 EP_TIP5P -0.241
146 Cl -1.0
147 Cl- -1.0
148 Na+ 1.0
149 Pchg+ 0.5
150 Pchg- -1.0
151 end ChargeAtomTypes
152
153 begin MultipoleAtomTypes
154 // OOPSE currently only supports charge-charge, charge-dipole,
155 // dipole-dipole, and charge-quadrupole interactions.
156 // Dipoles may be either traditional point-dipoles or split-dipoles.
157 // possible formats for a multipolar atom type are:
158 //
159 // Point-dipoles:
160 // name d phi theta psi dipole_moment
161 //
162 // Split-dipoles:
163 // name s phi theta psi dipole_moment splitdipole_distance
164 //
165 // Point-Quadrupoles:
166 // name q phi theta psi Qxx Qyy Qzz
167 //
168 // Atoms with both dipole and quadrupole moments:
169 // name dq phi theta psi dipole_moment Qxx Qyy Qzz
170 //
171 // Atoms with both split dipoles and quadrupole moments:
172 // name sq phi theta psi dipole_moment splitdipole_distance Qxx Qyy Qzz
173 //
174 // Euler angles are given in zxz convention in units of degrees.
175 //
176 // Charges are given in units of electrons.
177 //
178 // Dipoles are given in units of Debyes.
179 //
180 // Split dipole distances are given in units of Angstroms.
181 //
182 // Quadrupole moments are given in units of 10^-26 esu cm^2 (also known as an
183 // esu centi-barn)
184 //
185 H_DIP3P d 0.0 0.0 0.0 1.91
186 DIP d 0.0 0.0 0.0 1.91
187 SSD_E dq 0.0 0.0 0.0 2.42 -1.682 1.762 -0.08
188 SSD_RF dq 0.0 0.0 0.0 2.48 -1.682 1.762 -0.08
189 SSD dq 0.0 0.0 0.0 2.35 -1.682 1.762 -0.08
190 SSD1 dq 0.0 0.0 0.0 2.35 -1.682 1.762 -0.08
191 TAP dq 0.0 0.0 0.0 2.12 -1.682 1.762 -0.08
192 PDIP d 0.0 0.0 0.0 9.6064
193 //HDP s 0.0 0.0 0.0 20.6 4.63
194 end MultipoleAtomTypes
195
196 begin StickyAtomTypes
197 //name w0 v0 (kcal/mol) v0p rl (Ang) ru rlp rup
198 SSD_E 0.07715 3.90 3.90 2.40 3.80 2.75 3.35
199 SSD_RF 0.07715 3.90 3.90 2.40 3.80 2.75 3.35
200 SSD 0.07715 3.7284 3.7284 2.75 3.35 2.75 4.0
201 SSD1 0.07715 3.6613 3.6613 2.75 3.35 2.75 4.0
202 end StickyAtomTypes
203
204 begin StickyPowerAtomTypes
205 //name w0 v0 (kcal/mol) v0p rl (Ang) ru rlp rup
206 TAP 0.075 5.5 0.25 2.75 3.5 2.75 3.25
207 end StickyPowerAtomTypes
208
209 begin BondTypes
210
211 //Atom1 Atom2 Fixed
212 //V_Fixed = 0
213
214 //Atom1 Atom2 Harmonic b0 Kb (kcal/mol)
215 //V_Harmonic = 0.5*Kb(b- bo)^2
216 //Harmonic Examples
217 HEAD CH3 Harmonic 2.75 260
218 HEAD CH2 Harmonic 2.75 260
219 HEAD CH Harmonic 2.75 260
220 HEAD TB1 Harmonic 2.76 260
221 HEAD TB2 Harmonic 3.20 260
222 HEAD TB3 Harmonic 3.63 260
223 CH3 CH3 Harmonic 1.526 260
224 CH3 CH2 Harmonic 1.526 260
225 CH3 CH Harmonic 1.526 260
226 CH2 CH2 Harmonic 1.526 260
227 CH2 CH Harmonic 1.526 260
228 CH CH Harmonic 1.526 260
229 TB1 TB1 Harmonic 1.526 260
230 TB2 TB2 Harmonic 2.34 260
231 TB3 TB3 Harmonic 3.12 260
232 TB1 TE1 Harmonic 1.526 260
233 TB2 TE2 Harmonic 2.34 260
234 TB3 TE3 Harmonic 3.12 260
235
236 //Atom1 Atom2 Cubic b0 K3 K2 K1 K0
237 //V_Cubic = K3(b - b0)^3 + K2(b - b0)^2 + K1(b - b0) + K0
238
239
240 //Atom1 Atom2 Quartic b0 K4 K3 K2 K1 K0
241 //V_Quartic = K4(b - b0)^4 + K3(b - b0)^3 + K2(b - b0)^2 + K1(b - b0) + K0
242
243
244 //Atom1 Atom2 Polynomial b0 i Ki [j Kj]
245 //V_Quartic = Ki(b - b0)^i + Kj(b - b0)^j + ...
246
247
248 end BondTypes
249
250 begin BendTypes
251
252 //Harmonic
253 //Atom1 Atom2 Atom3 Harmonic Theta0 Ktheta
254 //V_Harmonic = 0.5*Ktheta(Theta - Theta0)^2
255 //Ktheta: kcal/mole/rad**2
256 //Theta0: degrees
257 //Harmonic examples
258 //
259 HEAD CH2 HEAD Harmonic 114.0 117.68
260 HEAD CH2 CH3 Harmonic 114.0 117.68
261 HEAD CH2 CH2 Harmonic 114.0 117.68
262 HEAD TB1 TB1 Harmonic 114.0 117.68
263 HEAD TB2 TB2 Harmonic 114.0 117.68
264 HEAD TB3 TB3 Harmonic 114.0 117.68
265 HEAD CH2 CH Harmonic 114.0 117.68
266 HEAD CH CH3 Harmonic 112.0 117.68
267 HEAD CH CH2 Harmonic 112.0 117.68
268 HEAD CH CH Harmonic 112.0 117.68
269 CH3 CH2 CH3 Harmonic 114.0 117.68
270 CH3 CH2 CH2 Harmonic 114.0 117.68
271 CH3 CH2 CH Harmonic 114.0 117.68
272 CH3 CH CH3 Harmonic 112.0 117.68
273 CH3 CH CH2 Harmonic 112.0 117.68
274 CH3 CH CH Harmonic 112.0 117.68
275 CH2 CH2 CH2 Harmonic 114.0 117.68
276 CH2 CH2 CH Harmonic 114.0 117.68
277 CH2 CH CH2 Harmonic 112.0 117.68
278 CH2 CH CH Harmonic 112.0 117.68
279 CH CH2 CH Harmonic 114.0 117.68
280 CH CH CH Harmonic 112.0 117.68
281 TB1 TB1 TB1 Harmonic 114.0 117.68
282 TB2 TB2 TB2 Harmonic 114.0 117.68
283 TB3 TB3 TB3 Harmonic 114.0 117.68
284 TE1 TB1 TB1 Harmonic 114.0 117.68
285 TE2 TB2 TB2 Harmonic 114.0 117.68
286 TE3 TB3 TB3 Harmonic 114.0 117.68
287
288 //GhostBend
289 //Atom1 Atom2 GHOST GhostBend Theta0 Ktheta
290 //Atom2 must be directional atom
291 //Ghost examples
292 CH2 HEAD GHOST GhostBend 129.783 0.00354
293 CH2 HEAD GHOST GhostBend 90.0 117.68
294 TB1 HEAD GHOST GhostBend 90.0 117.68
295 TB2 HEAD GHOST GhostBend 90.0 117.68
296 TB3 HEAD GHOST GhostBend 90.0 117.68
297
298 //UreyBradley
299 //Atom1 Atom2 Atom3 UreyBradley Theta0 Ktheta S0 Kub
300 //V_UreyBradleyBend = Ktheta(Theta - Theta0)^2 + Kub(S - S0)^2
301 //Ktheta: kcal/mole/rad**2
302 //Theta0: degrees
303 //Kub: kcal/mole/A**2
304 //S0: A
305
306 //Cubic
307 //Atom1 Atom2 Atom3 Cubic Theta0 K3 K2 K1 K0
308 //V_Cubic = K3(Theta - Theta0)^3 + K2(Theta - Theta0)^2 + K1(Theta - Theta0) + K0
309
310 //Quartic
311 //Atom1 Atom2 Atom3 Quartic Theta0 K4 K3 K2 K1 K0
312 //V_Quartic = K4(Theta - Theta0)^4 + K3(Theta - Theta0)^3 + K2(Theta - Theta0)^2 + K1(Theta - Theta0) + K0
313
314 //Polynomial
315 //Atom1 Atom2 Atom3 Polynomial Theta0 i Ki [j Kj]
316 //V_Polynomial = Ki(Theta - Theta0)^i + Kj(Theta - Theta0)^j + ...
317
318 end BendTypes
319
320 begin TorsionTypes
321
322 //Cubic
323 //Atom1 Atom2 Atom3 Atom4 Cubic k3 k2 k1 k0 ( all are kcal/mol )
324 //V_Cubic = k3(cos phi)^3 + k2(cos phi)^2 + k1(cos phi) + k0
325 //Cubic Examples
326 HEAD CH2 CH2 HEAD Cubic 5.9602 -0.2568 -3.802 2.1586
327 HEAD CH2 CH HEAD Cubic 3.3254 -0.4215 -1.686 1.1661
328 HEAD CH CH HEAD Cubic 3.3254 -0.4215 -1.686 1.1661
329 HEAD CH2 CH2 CH3 Cubic 5.9602 -0.2568 -3.802 2.1586
330 HEAD CH2 CH CH3 Cubic 3.3254 -0.4215 -1.686 1.1661
331 HEAD CH CH2 CH3 Cubic 3.3254 -0.4215 -1.686 1.1661
332 HEAD CH CH CH3 Cubic 3.3254 -0.4215 -1.686 1.1661
333 HEAD CH2 CH2 CH2 Cubic 5.9602 -0.2568 -3.802 2.1586
334 HEAD CH2 CH CH2 Cubic 3.3254 -0.4215 -1.686 1.1661
335 HEAD CH CH2 CH2 Cubic 3.3254 -0.4215 -1.686 1.1661
336 HEAD CH CH CH2 Cubic 3.3254 -0.4215 -1.686 1.1661
337 HEAD CH2 CH2 CH Cubic 5.9602 -0.2568 -3.802 2.1586
338 HEAD CH2 CH CH Cubic 3.3254 -0.4215 -1.686 1.1661
339 HEAD CH CH2 CH Cubic 3.3254 -0.4215 -1.686 1.1661
340 HEAD CH CH CH Cubic 3.3254 -0.4215 -1.686 1.1661
341 HEAD TB1 TB1 TB1 Cubic 5.9602 -0.2568 -3.802 2.1586
342 HEAD TB2 TB2 TB2 Cubic 5.9602 -0.2568 -3.802 2.1586
343 HEAD TB3 TB3 TB3 Cubic 5.9602 -0.2568 -3.802 2.1586
344 CH3 CH2 CH2 CH3 Cubic 5.9602 -0.2568 -3.802 2.1586
345 CH3 CH2 CH CH3 Cubic 3.3254 -0.4215 -1.686 1.1661
346 CH3 CH CH CH3 Cubic 3.3254 -0.4215 -1.686 1.1661
347 CH3 CH2 CH2 CH2 Cubic 5.9602 -0.2568 -3.802 2.1586
348 CH3 CH2 CH CH2 Cubic 3.3254 -0.4215 -1.686 1.1661
349 CH3 CH CH2 CH2 Cubic 3.3254 -0.4215 -1.686 1.1661
350 CH3 CH CH CH2 Cubic 3.3254 -0.4215 -1.686 1.1661
351 CH3 CH2 CH2 CH Cubic 5.9602 -0.2568 -3.802 2.1586
352 CH3 CH2 CH CH Cubic 3.3254 -0.4215 -1.686 1.1661
353 CH3 CH CH2 CH Cubic 3.3254 -0.4215 -1.686 1.1661
354 CH3 CH CH CH Cubic 3.3254 -0.4215 -1.686 1.1661
355 CH2 CH2 CH2 CH2 Cubic 5.9602 -0.2568 -3.802 2.1586
356 CH2 CH2 CH CH2 Cubic 3.3254 -0.4215 -1.686 1.1661
357 CH2 CH CH CH2 Cubic 3.3254 -0.4215 -1.686 1.1661
358 CH2 CH2 CH2 CH Cubic 5.9602 -0.2568 -3.802 2.1586
359 CH2 CH2 CH CH Cubic 3.3254 -0.4215 -1.686 1.1661
360 CH2 CH CH2 CH Cubic 3.3254 -0.4215 -1.686 1.1661
361 CH2 CH CH CH Cubic 3.3254 -0.4215 -1.686 1.1661
362 CH CH2 CH2 CH Cubic 5.9602 -0.2568 -3.802 2.1586
363 CH CH2 CH CH Cubic 3.3254 -0.4215 -1.686 1.1661
364 CH CH CH CH Cubic 3.3254 -0.4215 -1.686 1.1661
365 TB1 TB1 TB1 TB1 Cubic 5.9602 -0.2568 -3.802 2.1586
366 TB2 TB2 TB2 TB2 Cubic 5.9602 -0.2568 -3.802 2.1586
367 TB3 TB3 TB3 TB3 Cubic 5.9602 -0.2568 -3.802 2.1586
368 TE1 TB1 TB1 TB1 Cubic 5.9602 -0.2568 -3.802 2.1586
369 TE2 TB2 TB2 TB2 Cubic 5.9602 -0.2568 -3.802 2.1586
370 TE3 TB3 TB3 TB3 Cubic 5.9602 -0.2568 -3.802 2.1586
371
372 //Charmm
373 //Atom1 Atom2 Atom3 Atom4 Charmm Kchi n delta [Kchi n delta]
374 //V_Charmm = Kchi(1 + cos(n(chi) - delta))
375 //Kchi: kcal/mole
376 //n: multiplicity
377 //delta: degrees
378 //in some cases, a Charmm may have two or three terms. If n is equal to 0, it falls back to harmonic form
379
380 //Quartic
381 //Atom1 Atom2 Atom3 Atom4 Quartic k4 k3 k2 k1 k0 ( all are kcal/mol )
382 //V_Quartic = k4(cos phi)^4 + k3(cos phi)^3 + k2(cos phi)^2 + k1(cos phi) + k0
383
384 //Polynomial
385 //Atom1 Atom2 Atom3 Atom4 Polynomial i Ki [j Kj]
386 //VPolynomial = Ki (cos phi)^i + ... + Kj (cos phi)^j
387
388 end TorsionTypes
389
390