38 |
|
#packages containing libraries |
39 |
|
PackageLibs = \ |
40 |
|
utils \ |
41 |
+ |
visitors \ |
42 |
|
math \ |
43 |
|
types \ |
44 |
|
primitives \ |
44 |
– |
visitors \ |
45 |
|
UseTheForce/DarkSide \ |
46 |
|
UseTheForce \ |
47 |
|
brains \ |
48 |
|
io \ |
49 |
< |
integrators \ |
50 |
< |
minimizers \ |
49 |
> |
integrators\ |
50 |
|
constraints \ |
51 |
< |
profiling \ |
52 |
< |
restraints \ |
51 |
> |
minimizers \ |
52 |
> |
selection \ |
53 |
|
|
54 |
|
#packages containing applications |
55 |
|
Applications = \ |
56 |
|
applications/oopse \ |
57 |
|
applications/dump2Xyz \ |
58 |
< |
applications/simpleBuilder |
58 |
> |
applications/simpleBuilder\ |
59 |
> |
applications/staticProps \ |
60 |
> |
applications/dynamicProps \ |
61 |
|
|
62 |
+ |
Samples = \ |
63 |
+ |
samples/argon \ |
64 |
+ |
samples/water/dimer \ |
65 |
+ |
samples/water/spce \ |
66 |
+ |
samples/water/ssd \ |
67 |
+ |
samples/water/ssde \ |
68 |
+ |
samples/water/tip3p_ice \ |
69 |
+ |
samples/water/tip4p \ |
70 |
+ |
samples/lipid \ |
71 |
+ |
samples/alkane \ |
72 |
+ |
samples/minimizer \ |
73 |
+ |
samples/metals \ |
74 |
+ |
samples/zcons \ |
75 |
+ |
|
76 |
|
IncludeDirs = \ |
77 |
|
@SPRNG_INC_DIR@ \ |
78 |
|
@MPI_INC_DIR@ |
87 |
|
@MPI_F90_LIB@ |
88 |
|
|
89 |
|
OopseHome = @OOPSE_HOME@ |
90 |
< |
ForceParamDir = @OOPSE_HOME@/share/forceFields/ |
91 |
< |
SampleSimDir = @OOPSE_HOME@/share/samples/ |
90 |
> |
ForceParamDir = $(OopseHome)/share/forceFields |
91 |
> |
SampleSimDir = $(OopseHome)/share/samples |
92 |
> |
InstallBinDir = $(OopseHome)/bin |
93 |
> |
DocDir = $(OopseHome)/doc |
94 |
|
FrcDeclare = -DFRC_PATH="$(ForceParamDir)" |
95 |
+ |
F90Declare = -D__FORTRAN90 |
96 |
|
ParallelDeclare = -DIS_MPI |
97 |
|
UseMPI = @USE_MPI@ |
98 |
+ |
ModuleCase = @F90_MODULE_NAMES@ |
99 |
+ |
ModSuffix = @MOD@ |
100 |
|
LinkOptions = \ |
101 |
|
@F90LIBS@ |
102 |
|
|
114 |
|
TargetDir = $(DEV_ROOT)/obj |
115 |
|
ParallelTargetDir = $(DEV_ROOT)/MPIobj |
116 |
|
LibDir = $(DEV_ROOT)/lib |
97 |
– |
ParallelLibDir = $(DEV_ROOT)/MPIlib |
117 |
|
MakeDir = $(DEV_ROOT)/make |
118 |
|
BinDir = $(DEV_ROOT)/bin |
119 |
|
DocsDir = $(DEV_ROOT)/docs |
126 |
|
# /home/maul/gezelter/src/code/src/UseTheForce/Darkside --> UseTheForce/Darkside |
127 |
|
#Package = $(shell echo $(CurrentDir) | sed -e 's/^.*\/src\/\(.*\)/\1/g') |
128 |
|
#use shell script to get the absolute path and then rip it off from $(CurrentDir) |
129 |
< |
Package = $(subst $(shell cd $(SourceDir); pwd)/,,$(CurrentDir)) |
129 |
> |
#Package = $(subst $(shell cd $(SourceDir); pwd)/,,$(CurrentDir)) |
130 |
> |
# REMINDER: We are now using the Package line in each subdir makefile. |
131 |
> |
# This avoids the strange path problem and the subshell |
132 |
|
|
133 |
|
PackageList = $(Package) |
134 |
|
PackageSourceDir = $(SourceDir)/$(Package) |
228 |
|
ParallelStaticLibrary = $(LibDir)/lib$(subst /,,$(patsubst %,oopse_%,$(Package)))_MPI.a |
229 |
|
endif |
230 |
|
endif |
231 |
+ |
|
232 |
|
# |
233 |
|
# Misc |
234 |
|
# |
250 |
|
# |
251 |
|
#--------------------------------------------------------------------------- |
252 |
|
Print = @echo |
253 |
< |
Move = mv |
253 |
> |
Move = mv -f |
254 |
|
Copy = cp |
255 |
|
CCompiler = @CC@ |
256 |
|
CppCompiler = @CXX@ |
257 |
|
Linker = @CXX@ |
258 |
|
MakeDepend = makedepend |
259 |
< |
Install = @INSTALL@ |
259 |
> |
INSTALL = @INSTALL@ |
260 |
|
InstallProgram = @INSTALL_PROGRAM@ |
261 |
|
InstallData = @INSTALL_DATA@ |
262 |
< |
MakeDir = @MKINSTALLDIRS@ |
262 |
> |
MkDir = @MKINSTALLDIRS@ |
263 |
|
Delete = rm -fr |
264 |
|
StaticArchiver = @AR@ |
265 |
|
DynamicArchiver = @CC@ |
278 |
|
Yacc = @YACC@ |
279 |
|
Lex = @LEX@ |
280 |
|
Ranlib = @RANLIB@ |
281 |
+ |
Doxygen = @DOXYGEN@ |
282 |
|
|
260 |
– |
|
283 |
|
MakeOptions = -k |
284 |
|
MakeDependOptions = |
285 |
|
StaticArchiverOptions = rc |
288 |
|
JniOptions = |
289 |
|
RmiOptions = -d $(TargetDir) -classpath $(ClassPath) \ |
290 |
|
-sourcepath $(SourceDir) |
291 |
< |
COptions = $(FrcDeclare) |
292 |
< |
CParallelOptions = $(FrcDeclare) $(ParallelDeclare) |
293 |
< |
CppOptions = $(FrcDeclare) |
294 |
< |
CppParallelOptions = $(FrcDeclare) $(ParallelDeclare) |
291 |
> |
COptions = $(FrcDeclare) @CFLAGS@ |
292 |
> |
CParallelOptions = $(FrcDeclare) $(ParallelDeclare) @CFLAGS@ |
293 |
> |
CppOptions = $(FrcDeclare) @CXXFLAGS@ @OOPSE_TEMPLATE_FLAGS@ |
294 |
> |
CppParallelOptions = $(FrcDeclare) $(ParallelDeclare) @CXXFLAGS@ @OOPSE_TEMPLATE_FLAGS@ |
295 |
|
FortranOptions = |
296 |
< |
F90Options = @PREPFLAG@ @F90FLAGS@ @MODDIRFLAG@$(SourceDir) -module $(TargetDir) |
297 |
< |
F90ParallelOptions = @PREPFLAG@ @F90FLAGS@ @MODDIRFLAG@$(SourceDir) -module $(ParallelTargetDir) @PREPDEFFLAG@$(ParallelDeclare) |
296 |
> |
F90Options = @PREPFLAG@ @F90FLAGS@ @MODDIRFLAG@$(SourceDir) @MODDIRFLAG@$(TargetDir) |
297 |
> |
F90ParallelOptions = @PREPFLAG@ @F90FLAGS@ @MODDIRFLAG@$(SourceDir) @MODDIRFLAG@$(ParallelTargetDir) @PREPDEFFLAG@$(ParallelDeclare) |
298 |
|
JavaCompilerOptions = -d $(TargetDir) -classpath $(ClassPath) \ |
299 |
|
-sourcepath $(SourceDir) -deprecation |
300 |
|
JavaRunOptions = -classpath $(ClassPath) |
320 |
|
|
321 |
|
#--------------------------------------------------------------------------- |
322 |
|
# |
323 |
+ |
# Install |
324 |
+ |
# |
325 |
+ |
#--------------------------------------------------------------------------- |
326 |
+ |
|
327 |
+ |
ifneq "$(words $(SampleFiles))" "0" |
328 |
+ |
MySample = $(subst $(shell cd $(DEV_ROOT)/samples; pwd)/,,$(CurrentDir)) |
329 |
+ |
MyInstallDir = $(SampleSimDir)/$(MySample) |
330 |
+ |
InstallFiles = $(SampleFiles) |
331 |
+ |
InstallCommand = $(InstallData) |
332 |
+ |
endif |
333 |
+ |
|
334 |
+ |
ifneq "$(words $(Main))" "0" |
335 |
+ |
MyInstallDir = $(InstallBinDir) |
336 |
+ |
ifeq "$(UseMPI)" "yes" |
337 |
+ |
InstallFiles = $(Executable) $(ParallelExecutable) |
338 |
+ |
else |
339 |
+ |
InstallFiles = $(Executable) |
340 |
+ |
endif |
341 |
+ |
InstallCommand = $(InstallProgram) |
342 |
+ |
endif |
343 |
+ |
|
344 |
+ |
ifneq "$(words $(ForcefieldFiles))" "0" |
345 |
+ |
MyInstallDir = $(ForceParamDir) |
346 |
+ |
InstallFiles = $(ForcefieldFiles) |
347 |
+ |
InstallCommand = $(InstallData) |
348 |
+ |
endif |
349 |
+ |
|
350 |
+ |
ifneq "$(words $(InstallFiles))" "0" |
351 |
+ |
InstallList = |
352 |
+ |
else |
353 |
+ |
InstallList = $(patsubst %,$(DEV_ROOT)/%,$(Samples)) $(DEV_ROOT)/forceFields $(patsubst %, $(SourceDir)/%,$(Applications)) |
354 |
+ |
endif |
355 |
+ |
|
356 |
+ |
InstallListLoop = $(patsubst %,$(SourceDir)/%/.install,$(PackageList)) $(patsubst %,%/.install,$(InstallList)) |
357 |
+ |
|
358 |
+ |
|
359 |
+ |
|
360 |
+ |
#--------------------------------------------------------------------------- |
361 |
+ |
# |
362 |
|
# Rules |
363 |
|
# |
364 |
|
#--------------------------------------------------------------------------- |
369 |
|
|
370 |
|
# Create target directory |
371 |
|
$(PackageTargetDir) : |
372 |
< |
$(MakeDir) $@ |
372 |
> |
$(MkDir) $@ |
373 |
|
|
374 |
+ |
$(BinDir) : |
375 |
+ |
$(MkDir) $@ |
376 |
+ |
|
377 |
|
# .c -> .o |
378 |
|
$(PackageTargetDir)/%.o : %.c |
379 |
|
$(Print) $@ |
427 |
|
# .F90 -> .o |
428 |
|
$(PackageTargetDir)/%.o : %.F90 |
429 |
|
$(F90Compiler) $(F90Options) $(IncludePath) -c $< -o $@ |
430 |
+ |
if test -n "`ls *.$(ModSuffix)`"; then \ |
431 |
+ |
$(Move) `ls *.$(ModSuffix)` $(PackageTargetDir);\ |
432 |
+ |
fi |
433 |
|
|
434 |
|
$(PackageParallelTargetDir)/%.o : %.F90 |
435 |
|
$(F90Compiler) $(F90ParallelOptions) $(IncludePath) -c $< -o $@ |
436 |
+ |
if test -n "`ls *.$(ModSuffix)`"; then \ |
437 |
+ |
$(Move) "`ls *.$(ModSuffix)`" $(PackageParallelTargetDir);\ |
438 |
+ |
fi |
439 |
|
|
440 |
|
ifeq "$(UseMPI)" "yes" |
441 |
|
%.o : %.F90 |
442 |
|
$(MAKE) $(MakeOptions) $(PackageTargetDir)/$@ |
443 |
+ |
if test -n "`ls *.$(ModSuffix)`"; then\ |
444 |
+ |
$(Move) "`ls *.$(ModSuffix)`" $(PackageTargetDir);\ |
445 |
+ |
fi |
446 |
+ |
|
447 |
|
$(MAKE) $(MakeOptions) $(PackageParallelTargetDir)/$@ |
448 |
+ |
if test -n "`ls *.$(ModSuffix)`"; then\ |
449 |
+ |
$(Move) "`ls *.$(ModSuffix)`" $(PackageTargetDir);\ |
450 |
+ |
fi |
451 |
+ |
|
452 |
|
else |
453 |
|
%.o : %.F90 |
454 |
|
$(MAKE) $(MakeOptions) $(PackageTargetDir)/$@ |
455 |
+ |
if test -n "`ls *.$(ModSuffix)`"; then\ |
456 |
+ |
$(Move) "`ls *.$(ModSuffix)`" $(PackageTargetDir);\ |
457 |
+ |
fi |
458 |
|
endif |
459 |
|
|
460 |
|
|
494 |
|
|
495 |
|
$(LibDir)/%_UP.a : $(ObjectFiles) |
496 |
|
$(StaticArchiver) $(StaticArchiverOptions) $@ $(ObjectFiles) |
497 |
< |
touch $(LibDir)/.stamp_UP |
497 |
> |
@touch $(LibDir)/.stamp_UP |
498 |
|
|
499 |
|
$(LibDir)/%_MPI.a: $(ParallelObjectFiles) |
500 |
|
$(StaticArchiver) $(StaticArchiverOptions) $@ $(ParallelObjectFiles) |
501 |
< |
touch $(LibDir)/.stamp_MPI |
501 |
> |
@touch $(LibDir)/.stamp_MPI |
502 |
|
|
503 |
|
%_UP.a : $(ObjectFiles) |
504 |
|
$(MAKE) $(MakeOptions) $(LibDir)/$@ |
551 |
|
%_Skel.class : %.class |
552 |
|
$(MAKE) $(MakeOptions) $(PackageTargetDir)/$@ |
553 |
|
|
554 |
+ |
document : |
555 |
+ |
$(Print) Generate Documentation for OOPSE-2.0 |
556 |
+ |
@cd $(DEV_ROOT)/src |
557 |
+ |
$(Doxygen) $(DEV_ROOT)/make/Doxyfile |
558 |
+ |
|
559 |
|
#GUN make funtions to merge the libraries |
560 |
|
find_objs = $(shell $(StaticArchiver) -t $(1)) |
561 |
|
extract_objs = $(shell $(StaticArchiver) -x $(1) $(call find_objs, $(1))) |
563 |
|
remove_objs = $(shell $(Delete) $(call find_objs, $(1))) |
564 |
|
do_create = $(call extract_objs,$(1))$(call create_archive,$(1),$(2))$(call remove_objs,$(1)) |
565 |
|
|
566 |
< |
$(CombinedStaticLib) : $(LibDir)/.stamp_UP |
566 |
> |
$(CombinedStaticLib) : $(LibDir)/.stamp_UP |
567 |
> |
$(Print) create $@ |
568 |
|
$(foreach thisLib,$(LibNames),$(call do_create,$(thisLib),$@)) |
569 |
|
$(Ranlib) $(CombinedStaticLib) |
570 |
|
|
571 |
|
$(CombinedParallelStaticLib) : $(LibDir)/.stamp_MPI |
572 |
+ |
$(Print) create $@ |
573 |
|
$(foreach thisLib,$(ParallelLibNames), $(call do_create, $(thisLib), $@)) |
574 |
|
$(Ranlib) $(CombinedParallelStaticLib) |
575 |
|
|
576 |
|
# Executable |
577 |
< |
$(Executable) : $(CombinedStaticLib) $(ObjectFiles) |
578 |
< |
$(Linker) $(ObjectFiles) $(LinkOptions) $(LibDirs) $(CombinedStaticLib) $(Libraries) -o $@ |
577 |
> |
$(Executable) : $(CombinedStaticLib) $(ObjectFiles) $(BinDir) |
578 |
> |
$(Linker) $(ObjectFiles) $(CombinedStaticLib) $(LinkOptions) $(LibDirs) $(Libraries) -o $@ |
579 |
|
|
580 |
< |
$(ParallelExecutable) : $(CombinedParallelStaticLib) $(ParallelObjectFiles) |
581 |
< |
$(Linker) $(ParallelObjectFiles) $(ParallelLinkOptions) $(LibDirs) $(CombinedParallelStaticLib) $(Libraries) -o $@ |
580 |
> |
$(ParallelExecutable) : $(CombinedParallelStaticLib) $(ParallelObjectFiles) $(BinDir) |
581 |
> |
$(Linker) $(ParallelObjectFiles) $(CombinedParallelStaticLib) $(ParallelLinkOptions) $(LibDirs) $(Libraries) -o $@ |
582 |
|
|
583 |
|
# Anything else is just copied from source to target |
584 |
|
$(PackageTargetDir)/% : $(PackageSourceDir)/% |
591 |
|
|
592 |
|
_all : _buildall |
593 |
|
|
594 |
+ |
_buildall : |
595 |
|
ifeq "$(UseMPI)" "yes" |
596 |
|
_buildall : \ |
597 |
|
$(DependencyFile) \ |
656 |
|
$(Print) $@ |
657 |
|
@cd $(PackageSourceDir) |
658 |
|
|
570 |
– |
@touch Make.ctemp |
571 |
– |
@touch Make.ctemp |
572 |
– |
|
659 |
|
ifneq "$(words $(CppFiles))" "0" |
660 |
< |
$(CppCompiler) $(IncludePath) -MM $(CppFiles) > Make.cpptemp |
661 |
< |
cat Make.cpptemp | sed 's/^[a-zA-Z0-9]/$$\(DEV_ROOT\)\/obj\/&/g' >> $(DependencyFile) |
662 |
< |
cat Make.cpptemp | sed 's/^[a-zA-Z0-9]/$$\(DEV_ROOT\)\/MPIobj\/&/g' >> $(DependencyFile) |
660 |
> |
$(DEV_ROOT)/scripts/filepp -I $(DEV_ROOT)/src -od '$$(TargetDir)/' -MM $(CppFiles)>> Make.cpptemp |
661 |
> |
@cat Make.cpptemp >> $(DependencyFile) |
662 |
> |
$(Delete) Make.cpptemp |
663 |
> |
|
664 |
> |
ifeq "$(UseMPI)" "yes" |
665 |
> |
$(DEV_ROOT)/scripts/filepp -I $(DEV_ROOT)/src -od '$$(ParallelTargetDir)/' $(ParallelDeclare) -MM $(CppFiles)>> Make.cpptemp |
666 |
> |
@cat Make.cpptemp >> $(DependencyFile) |
667 |
> |
@$(Delete) Make.cpptemp |
668 |
> |
endif |
669 |
> |
|
670 |
|
endif |
671 |
|
|
672 |
|
ifneq "$(words $(CFiles))" "0" |
673 |
< |
$(CCompiler) $(IncludePath) -MM $(CFiles) $(DerivedCFiles) > Make.ctemp |
674 |
< |
cat Make.ctemp | sed 's/^[a-zA-Z0-9]/$$\(DEV_ROOT\)\/obj\/&/g' >> $(DependencyFile) |
675 |
< |
cat Make.ctemp | sed 's/^[a-zA-Z0-9]/$$\(DEV_ROOT\)\/MPIobj\/&/g' >> $(DependencyFile) |
673 |
> |
$(DEV_ROOT)/scripts/filepp -I $(DEV_ROOT)/src -od '$$(TargetDir)/' -MM $(CFiles) $(DerivedCFiles) >> Make.ctemp |
674 |
> |
@cat Make.ctemp >> $(DependencyFile) |
675 |
> |
$(Delete) Make.ctemp |
676 |
|
|
677 |
+ |
ifeq "$(UseMPI)" "yes" |
678 |
+ |
$(DEV_ROOT)/scripts/filepp -I $(DEV_ROOT)/src -od '$$(ParallelTargetDir)/' $(ParallelDeclare) -MM $(CFiles) $(DerivedCFiles) >> Make.ctemp |
679 |
+ |
@cat Make.ctemp >> $(DependencyFile) |
680 |
+ |
@$(Delete) Make.ctemp |
681 |
+ |
endif |
682 |
+ |
|
683 |
|
endif |
684 |
|
|
685 |
|
ifneq "$(words $(F90Files))" "0" |
686 |
< |
$(DEV_ROOT)/scripts/filepp -I $(DEV_ROOT)/src -od '$$(DEV_ROOT)/obj/' -D__FORTRAN90 $(F90Files) > Make.ftemp |
687 |
< |
$(DEV_ROOT)/scripts/filepp -I $(DEV_ROOT)/src -od '$$(DEV_ROOT)/MPIobj/' -DIS_MPI -D__FORTRAN90 $(F90Files) >> Make.ftemp |
688 |
< |
cat Make.ftemp >> $(DependencyFile) |
686 |
> |
$(DEV_ROOT)/scripts/filepp -I $(DEV_ROOT)/src -od '$$(TargetDir)/' $(F90Declare) -MM -mc $(ModuleCase) -ms $(ModSuffix) $(F90Files) > Make.ftemp |
687 |
> |
@cat Make.ftemp >> $(DependencyFile) |
688 |
> |
@$(Delete) Make.ftemp |
689 |
> |
|
690 |
> |
ifeq "$(UseMPI)" "yes" |
691 |
> |
$(DEV_ROOT)/scripts/filepp -I $(DEV_ROOT)/src -od '$$(ParallelTargetDir)/' $(ParallelDeclare) $(F90Declare) -MM -mc $(ModuleCase) -ms $(ModSuffix) $(F90Files) >> Make.ftemp |
692 |
> |
@cat Make.ftemp >> $(DependencyFile) |
693 |
> |
@$(Delete) Make.ftemp |
694 |
> |
endif |
695 |
> |
|
696 |
|
endif |
591 |
– |
$(Delete) Make.cpptemp Make.ctemp Make.ftemp |
697 |
|
|
698 |
|
# make lib |
699 |
|
lib : $(PackageListLoop) |
706 |
|
jarsign : $(JarFile) |
707 |
|
$(JarSigner) -keystore GeoSoftKeystore $(JarFile) myself |
708 |
|
|
709 |
+ |
#make install |
710 |
+ |
%.install : |
711 |
+ |
@$(MAKE) $(MakeOptions) -C $(subst .install,,$@) _installall |
712 |
+ |
|
713 |
+ |
install : $(InstallListLoop) |
714 |
+ |
$(Print) Done Install |
715 |
+ |
|
716 |
+ |
_installall : _buildall _installdata |
717 |
+ |
|
718 |
+ |
$(MyInstallDir) : |
719 |
+ |
$(MkDir) $@ |
720 |
+ |
|
721 |
+ |
_installdata : $(MyInstallDir) |
722 |
+ |
$(Print) $(InstallFiles) |
723 |
+ |
ifneq "$(words $(InstallFiles))" "0" |
724 |
+ |
$(InstallData) $(InstallFiles) $(MyInstallDir) |
725 |
+ |
endif |
726 |
+ |
|
727 |
|
# make statistics |
728 |
|
_statisticsall : |
729 |
< |
@$(Print) $(SourceFiles) >> $(DEV_ROOT)/files.tmp |
729 |
> |
@$(Print) $(patsubst %,$(CurrentDir)/%,$(SourceFiles)) >> $(DEV_ROOT)/files.tmp |
730 |
|
|
731 |
|
statistics : $(PackageListLoop) |
732 |
|
@$(List) $(DEV_ROOT)/files.tmp | xargs $(WordCount) $(WordCountOptions) |