38 |
|
#packages containing libraries |
39 |
|
PackageLibs = \ |
40 |
|
utils \ |
41 |
+ |
visitors \ |
42 |
|
math \ |
43 |
|
types \ |
44 |
|
primitives \ |
44 |
– |
visitors \ |
45 |
|
UseTheForce/DarkSide \ |
46 |
|
UseTheForce \ |
47 |
|
brains \ |
48 |
|
io \ |
49 |
< |
integrators \ |
50 |
< |
minimizers \ |
49 |
> |
integrators\ |
50 |
|
constraints \ |
51 |
< |
profiling \ |
51 |
> |
minimizers \ |
52 |
> |
selection \ |
53 |
|
restraints \ |
54 |
+ |
lattice \ |
55 |
|
|
56 |
|
#packages containing applications |
57 |
|
Applications = \ |
58 |
|
applications/oopse \ |
59 |
|
applications/dump2Xyz \ |
60 |
< |
applications/simpleBuilder |
60 |
> |
applications/staticProps \ |
61 |
> |
applications/dynamicProps \ |
62 |
> |
applications/simpleBuilder\ |
63 |
> |
applications/nanoRodBuilder \ |
64 |
|
|
65 |
|
Samples = \ |
66 |
|
samples/argon \ |
67 |
< |
samples/water/dimer \ |
67 |
> |
samples/water/dimer \ |
68 |
|
samples/water/spce \ |
69 |
|
samples/water/ssd \ |
70 |
|
samples/water/ssde \ |
71 |
+ |
samples/water/ssdrf \ |
72 |
+ |
samples/water/ssd-ion \ |
73 |
|
samples/water/tip3p_ice \ |
74 |
|
samples/water/tip4p \ |
75 |
|
samples/lipid \ |
76 |
|
samples/alkane \ |
77 |
|
samples/minimizer \ |
78 |
|
samples/metals \ |
79 |
+ |
samples/thermoIntegration/liquid \ |
80 |
+ |
samples/thermoIntegration/solid \ |
81 |
+ |
samples/dipole \ |
82 |
+ |
samples/shape \ |
83 |
|
samples/zcons \ |
84 |
|
|
85 |
|
IncludeDirs = \ |
86 |
< |
@SPRNG_INC_DIR@ \ |
87 |
< |
@MPI_INC_DIR@ |
86 |
> |
@CGAL_INC_DIR@ \ |
87 |
> |
@MPI_INC_DIR@ |
88 |
|
|
89 |
|
LibraryDirs = \ |
90 |
< |
@SPRNG_LIB_DIR@ \ |
90 |
> |
@CGAL_LIB_DIR@ \ |
91 |
|
@MPI_LIB_DIR@ |
92 |
|
|
93 |
|
Libraries = \ |
94 |
< |
@SPRNG_LIB@ \ |
94 |
> |
@CGAL_LIBS@ \ |
95 |
|
@MPI_LIB@ \ |
96 |
< |
@MPI_F90_LIB@ |
96 |
> |
@MPI_F90_LIB@ |
97 |
|
|
98 |
|
OopseHome = @OOPSE_HOME@ |
99 |
|
ForceParamDir = $(OopseHome)/share/forceFields |
135 |
|
# /home/maul/gezelter/src/code/src/UseTheForce/Darkside --> UseTheForce/Darkside |
136 |
|
#Package = $(shell echo $(CurrentDir) | sed -e 's/^.*\/src\/\(.*\)/\1/g') |
137 |
|
#use shell script to get the absolute path and then rip it off from $(CurrentDir) |
138 |
< |
Package = $(subst $(shell cd $(SourceDir); pwd)/,,$(CurrentDir)) |
138 |
> |
#Package = $(subst $(shell cd $(SourceDir); pwd)/,,$(CurrentDir)) |
139 |
> |
# REMINDER: We are now using the Package line in each subdir makefile. |
140 |
> |
# This avoids the strange path problem and the subshell |
141 |
|
|
142 |
|
PackageList = $(Package) |
143 |
|
PackageSourceDir = $(SourceDir)/$(Package) |
216 |
|
|
217 |
|
OtherTargetFiles = $(OtherSourceFiles:%=$(PackageTargetDir)/%) |
218 |
|
|
219 |
+ |
########################################################################### |
220 |
+ |
# |
221 |
+ |
# Figure out the names of the module files based on some work done by |
222 |
+ |
# configure. The tr function below is from John Graham-Cumming |
223 |
+ |
# (http://www.jgc.org). |
224 |
+ |
# |
225 |
+ |
# The tr function. Has three arguments: |
226 |
+ |
# |
227 |
+ |
# $1 The list of characters to translate from |
228 |
+ |
# $2 The list of characters to translate to |
229 |
+ |
# $3 The text to translate |
230 |
+ |
# |
231 |
+ |
# For example, $(call tr,A B C,1 2 3,CAPITAL) becomes 21PIT1L. |
232 |
+ |
|
233 |
+ |
tr = $(eval __t := $3) \ |
234 |
+ |
$(foreach c, \ |
235 |
+ |
$(join $(addsuffix :,$1),$2), \ |
236 |
+ |
$(eval __t := \ |
237 |
+ |
$(subst $(word 1,$(subst :, ,$c)),$(word 2,$(subst :, ,$c)), \ |
238 |
+ |
$(__t))))$(__t) |
239 |
+ |
|
240 |
+ |
# Common character classes for use with the tr function. Each of |
241 |
+ |
# these is actually a variable declaration and must be wrapped with |
242 |
+ |
# $() or ${} to be used. |
243 |
+ |
|
244 |
+ |
[A-Z] := A B C D E F G H I J K L M N O P Q R S T U V W X Y Z # |
245 |
+ |
[a-z] := a b c d e f g h i j k l m n o p q r s t u v w x y z # |
246 |
+ |
[0-9] := 0 1 2 3 4 5 6 7 8 9 # |
247 |
+ |
[A-F] := A B C D E F # |
248 |
+ |
|
249 |
+ |
# Figure out whether we have $(eval) or not (GNU Make 3.80 and above) |
250 |
+ |
# if we do not then we need to use the shell version of tr, and not the |
251 |
+ |
# faster tr function above: |
252 |
+ |
|
253 |
+ |
__have_eval := $(false) |
254 |
+ |
__ignore := $(eval __have_eval := $(true)) |
255 |
+ |
|
256 |
+ |
ifndef __have_eval |
257 |
+ |
uc = $(shell echo $1 | tr "a-z" "A-Z") |
258 |
+ |
lc = $(shell echo $1 | tr "A-Z" "a-z") |
259 |
+ |
else |
260 |
+ |
uc = $(call tr,$([a-z]),$([A-Z]),$1) |
261 |
+ |
lc = $(call tr,$([A-Z]),$([a-z]),$1) |
262 |
+ |
endif |
263 |
+ |
|
264 |
+ |
# OK, now we can actually use these functions to figure out the names |
265 |
+ |
# of the module files: |
266 |
+ |
|
267 |
+ |
ifneq "$(words $(Modules))" "0" |
268 |
+ |
ifeq "$(ModuleCase)" "UPPER" |
269 |
+ |
MODULES = $(call uc,$(Modules)) |
270 |
+ |
else |
271 |
+ |
ifeq "$(ModuleCase)" "lower" |
272 |
+ |
MODULES = $(call lc,$(Modules)) |
273 |
+ |
else |
274 |
+ |
MODULES = $(Modules) |
275 |
+ |
endif |
276 |
+ |
endif |
277 |
+ |
ModuleFiles = $(MODULES:%= $(PackageTargetDir)/%.$(ModSuffix)) |
278 |
+ |
ParallelModuleFiles = $(MODULES:%= $(PackageParallelTargetDir)/%.$(ModSuffix)) |
279 |
+ |
endif |
280 |
+ |
# |
281 |
+ |
########################################################################### |
282 |
+ |
|
283 |
|
ThirdPartyJarsTmp = $(patsubst %,$(LibDir)/%,$(JavaLibraries)) |
284 |
|
ThirdPartyJars = $(subst $(Space),$(X),$(ThirdPartyJarsTmp)) |
285 |
|
|
291 |
|
#if Main is defined, do not build library. It may not be true sometimes |
292 |
|
ifneq "$(words $(ObjectFiles) $(ParallelObjectFiles))" "0" |
293 |
|
DependencyFile = $(PackageSourceDir)/Makedepend |
294 |
< |
ifneq "$(Main)" "" |
294 |
> |
ifneq "$(words $(Main))" "0" |
295 |
|
Executable = $(BinDir)/$(Main) |
296 |
< |
ParallelExecutable = $(BinDir)/$(Main)_MPI |
296 |
> |
ifeq "$(BuiltParallelExe)" "1" |
297 |
> |
ParallelExecutable = $(BinDir)/$(Main)_MPI |
298 |
> |
endif |
299 |
|
else |
300 |
|
SharedLibrary = $(LibDir)/lib$(subst /,,$(patsubst %,oopse_%,$(Package)))_UP.so |
301 |
|
StaticLibrary = $(LibDir)/lib$(subst /,,$(patsubst %,oopse_%,$(Package)))_UP.a |
325 |
|
# |
326 |
|
#--------------------------------------------------------------------------- |
327 |
|
Print = @echo |
328 |
< |
Move = mv |
328 |
> |
Move = mv -f |
329 |
|
Copy = cp |
330 |
|
CCompiler = @CC@ |
331 |
|
CppCompiler = @CXX@ |
333 |
|
MakeDepend = makedepend |
334 |
|
INSTALL = @INSTALL@ |
335 |
|
InstallProgram = @INSTALL_PROGRAM@ |
336 |
+ |
InstallScript = @INSTALL_SCRIPT@ |
337 |
|
InstallData = @INSTALL_DATA@ |
338 |
< |
MkDir = @MKINSTALLDIRS@ |
338 |
> |
MkDir = @MKINSTALLDIRS@ |
339 |
|
Delete = rm -fr |
340 |
|
StaticArchiver = @AR@ |
341 |
|
DynamicArchiver = @CC@ |
364 |
|
JniOptions = |
365 |
|
RmiOptions = -d $(TargetDir) -classpath $(ClassPath) \ |
366 |
|
-sourcepath $(SourceDir) |
367 |
< |
COptions = $(FrcDeclare) |
368 |
< |
CParallelOptions = $(FrcDeclare) $(ParallelDeclare) |
369 |
< |
CppOptions = $(FrcDeclare) |
370 |
< |
CppParallelOptions = $(FrcDeclare) $(ParallelDeclare) |
367 |
> |
COptions = $(FrcDeclare) @CFLAGS@ |
368 |
> |
CParallelOptions = $(FrcDeclare) $(ParallelDeclare) @CFLAGS@ |
369 |
> |
CppOptions = $(FrcDeclare) @CXXFLAGS@ @OOPSE_TEMPLATE_FLAGS@ |
370 |
> |
CppParallelOptions = $(FrcDeclare) $(ParallelDeclare) @CXXFLAGS@ @OOPSE_TEMPLATE_FLAGS@ |
371 |
|
FortranOptions = |
372 |
|
F90Options = @PREPFLAG@ @F90FLAGS@ @MODDIRFLAG@$(SourceDir) @MODDIRFLAG@$(TargetDir) |
373 |
|
F90ParallelOptions = @PREPFLAG@ @F90FLAGS@ @MODDIRFLAG@$(SourceDir) @MODDIRFLAG@$(ParallelTargetDir) @PREPDEFFLAG@$(ParallelDeclare) |
445 |
|
|
446 |
|
# Create target directory |
447 |
|
$(PackageTargetDir) : |
448 |
< |
$(MakeDir) $@ |
448 |
> |
$(MkDir) $@ |
449 |
|
|
450 |
+ |
$(BinDir) : |
451 |
+ |
$(MkDir) $@ |
452 |
+ |
|
453 |
|
# .c -> .o |
454 |
|
$(PackageTargetDir)/%.o : %.c |
455 |
|
$(Print) $@ |
503 |
|
# .F90 -> .o |
504 |
|
$(PackageTargetDir)/%.o : %.F90 |
505 |
|
$(F90Compiler) $(F90Options) $(IncludePath) -c $< -o $@ |
506 |
< |
if test -f *.$(ModSuffix); then \ |
507 |
< |
$(Move) *.$(ModSuffix) $(PackageTargetDir);\ |
506 |
> |
if test -n "`ls *.$(ModSuffix)`"; then \ |
507 |
> |
$(Move) `ls *.$(ModSuffix)` $(PackageTargetDir);\ |
508 |
|
fi |
509 |
|
|
510 |
|
$(PackageParallelTargetDir)/%.o : %.F90 |
511 |
|
$(F90Compiler) $(F90ParallelOptions) $(IncludePath) -c $< -o $@ |
512 |
< |
if test -f *.$(ModSuffix); then \ |
513 |
< |
$(Move) *.$(ModSuffix) $(PackageParallelTargetDir);\ |
512 |
> |
if test -n "`ls *.$(ModSuffix)`"; then \ |
513 |
> |
$(Move) "`ls *.$(ModSuffix)`" $(PackageParallelTargetDir);\ |
514 |
|
fi |
515 |
|
|
516 |
|
ifeq "$(UseMPI)" "yes" |
517 |
|
%.o : %.F90 |
518 |
|
$(MAKE) $(MakeOptions) $(PackageTargetDir)/$@ |
519 |
< |
if test -f *.$(ModSuffix); then \ |
520 |
< |
$(Move) *.$(ModSuffix) $(PackageTargetDir);\ |
521 |
< |
fi |
519 |
> |
if test -n "`ls *.$(ModSuffix)`"; then\ |
520 |
> |
$(Move) "`ls *.$(ModSuffix)`" $(PackageTargetDir);\ |
521 |
> |
fi |
522 |
|
|
523 |
|
$(MAKE) $(MakeOptions) $(PackageParallelTargetDir)/$@ |
524 |
< |
if test -f *.$(ModSuffix); then \ |
525 |
< |
$(Move) *.$(ModSuffix) $(PackageParallelTargetDir);\ |
524 |
> |
if test -n "`ls *.$(ModSuffix)`"; then\ |
525 |
> |
$(Move) "`ls *.$(ModSuffix)`" $(PackageTargetDir);\ |
526 |
|
fi |
527 |
|
|
528 |
|
else |
529 |
|
%.o : %.F90 |
530 |
|
$(MAKE) $(MakeOptions) $(PackageTargetDir)/$@ |
531 |
< |
if test -f *.$(ModSuffix); then \ |
532 |
< |
$(Move) *.$(ModSuffix) $(PackageTargetDir);\ |
533 |
< |
fi |
452 |
< |
|
531 |
> |
if test -n "`ls *.$(ModSuffix)`"; then\ |
532 |
> |
$(Move) "`ls *.$(ModSuffix)`" $(PackageTargetDir);\ |
533 |
> |
fi |
534 |
|
endif |
535 |
|
|
536 |
|
|
650 |
|
$(Ranlib) $(CombinedParallelStaticLib) |
651 |
|
|
652 |
|
# Executable |
653 |
< |
$(Executable) : $(CombinedStaticLib) $(ObjectFiles) |
654 |
< |
$(Linker) $(ObjectFiles) $(LinkOptions) $(LibDirs) $(CombinedStaticLib) $(Libraries) -o $@ |
653 |
> |
$(Executable) : $(CombinedStaticLib) $(ObjectFiles) $(BinDir) |
654 |
> |
$(Linker) $(ObjectFiles) $(CombinedStaticLib) $(LinkOptions) $(LibDirs) $(Libraries) -o $@ |
655 |
|
|
656 |
< |
$(ParallelExecutable) : $(CombinedParallelStaticLib) $(ParallelObjectFiles) |
657 |
< |
$(Linker) $(ParallelObjectFiles) $(ParallelLinkOptions) $(LibDirs) $(CombinedParallelStaticLib) $(Libraries) -o $@ |
656 |
> |
$(ParallelExecutable) : $(CombinedParallelStaticLib) $(ParallelObjectFiles) $(BinDir) |
657 |
> |
$(Linker) $(ParallelObjectFiles) $(CombinedParallelStaticLib) $(ParallelLinkOptions) $(LibDirs) $(Libraries) -o $@ |
658 |
|
|
659 |
|
# Anything else is just copied from source to target |
660 |
|
$(PackageTargetDir)/% : $(PackageSourceDir)/% |
697 |
|
$(Executable) |
698 |
|
endif |
699 |
|
|
700 |
+ |
echo : $(PackageListLoop) |
701 |
+ |
$(Print) Done echo. |
702 |
+ |
|
703 |
+ |
_echoall : |
704 |
+ |
$(Print) $(Modules) |
705 |
|
|
706 |
|
# make clean |
707 |
|
clean : $(PackageListLoop) |
708 |
|
$(Print) Done clean. |
709 |
|
|
710 |
|
_cleanall : |
711 |
< |
$(Delete) $(ObjectFiles) $(ParallelObjectFiles) |
711 |
> |
$(Delete) \ |
712 |
> |
$(ObjectFiles) \ |
713 |
> |
$(ModuleFiles) \ |
714 |
> |
$(ParallelObjectFiles) \ |
715 |
> |
$(ParallelModuleFiles) \ |
716 |
> |
$(JarFile) \ |
717 |
> |
$(SharedLibrary) \ |
718 |
> |
$(StaticLibrary) \ |
719 |
> |
$(ParallelSharedLibrary) \ |
720 |
> |
$(ParallelStaticLibrary) \ |
721 |
> |
$(CombinedStaticLib) \ |
722 |
> |
$(CombinedParallelStaticLib) |
723 |
|
|
724 |
|
# make distclean |
725 |
|
distclean : $(PackageListLoop) |
726 |
|
$(Print) Done clean. |
727 |
|
|
728 |
< |
_distcleanall : |
729 |
< |
$(Delete) $(ObjectFiles) \ |
633 |
< |
$(ParallelObjectFiles) \ |
634 |
< |
$(JarFile) \ |
635 |
< |
$(SharedLibrary) \ |
636 |
< |
$(StaticLibrary) \ |
637 |
< |
$(ParallelSharedLibrary) \ |
638 |
< |
$(ParallelStaticLibrary) \ |
639 |
< |
$(Executable) \ |
728 |
> |
_distcleanall : _cleanall |
729 |
> |
$(Delete) $(Executable) \ |
730 |
|
$(ParallelExecutable) \ |
731 |
|
$(DependencyFile) |
732 |
|
|
643 |
– |
|
733 |
|
# make depend |
734 |
|
depend : $(PackageListLoop) |
735 |
|
$(Print) Done dependencies. |
741 |
|
@cd $(PackageSourceDir) |
742 |
|
|
743 |
|
ifneq "$(words $(CppFiles))" "0" |
744 |
< |
$(CppCompiler) $(CppOptions) $(IncludePath) -MM $(CppFiles) > Make.cpptemp |
745 |
< |
@cat Make.cpptemp | sed 's/^[a-zA-Z0-9]/$$\(TargetDir\)\/&/g' >> $(DependencyFile) |
744 |
> |
$(DEV_ROOT)/scripts/filepp -I $(DEV_ROOT)/src -od '$$(TargetDir)/' -MM $(CppFiles)>> Make.cpptemp |
745 |
> |
@cat Make.cpptemp >> $(DependencyFile) |
746 |
|
$(Delete) Make.cpptemp |
747 |
|
|
748 |
|
ifeq "$(UseMPI)" "yes" |
749 |
< |
$(CppCompiler) $(CppParallelOptions) $(IncludePath) -MM $(CppFiles) > Make.cpptemp |
750 |
< |
@cat Make.cpptemp | sed 's/^[a-zA-Z0-9]/$$\(ParallelTargetDir\)\/&/g' >> $(DependencyFile) |
749 |
> |
$(DEV_ROOT)/scripts/filepp -I $(DEV_ROOT)/src -od '$$(ParallelTargetDir)/' $(ParallelDeclare) -MM $(CppFiles)>> Make.cpptemp |
750 |
> |
@cat Make.cpptemp >> $(DependencyFile) |
751 |
|
@$(Delete) Make.cpptemp |
752 |
|
endif |
753 |
|
|
754 |
|
endif |
755 |
|
|
756 |
|
ifneq "$(words $(CFiles))" "0" |
757 |
< |
$(CCompiler) $(COptions) $(IncludePath) -MM $(CFiles) $(DerivedCFiles) > Make.ctemp |
758 |
< |
@cat Make.ctemp | sed 's/^[a-zA-Z0-9]/$$\(TargetDir\)\/&/g' >> $(DependencyFile) |
757 |
> |
$(DEV_ROOT)/scripts/filepp -I $(DEV_ROOT)/src -od '$$(TargetDir)/' -MM $(CFiles) $(DerivedCFiles) >> Make.ctemp |
758 |
> |
@cat Make.ctemp >> $(DependencyFile) |
759 |
|
$(Delete) Make.ctemp |
760 |
|
|
761 |
|
ifeq "$(UseMPI)" "yes" |
762 |
< |
$(CCompiler) $(CParallelOptions) $(IncludePath) -MM $(CFiles) $(DerivedCFiles) > Make.ctemp |
763 |
< |
@cat Make.ctemp | sed 's/^[a-zA-Z0-9]/$$\(ParallelTargetDir\)\/&/g' >> $(DependencyFile) |
762 |
> |
$(DEV_ROOT)/scripts/filepp -I $(DEV_ROOT)/src -od '$$(ParallelTargetDir)/' $(ParallelDeclare) -MM $(CFiles) $(DerivedCFiles) >> Make.ctemp |
763 |
> |
@cat Make.ctemp >> $(DependencyFile) |
764 |
|
@$(Delete) Make.ctemp |
765 |
|
endif |
766 |
|
|
767 |
|
endif |
768 |
|
|
769 |
|
ifneq "$(words $(F90Files))" "0" |
770 |
< |
$(DEV_ROOT)/scripts/filepp -I $(DEV_ROOT)/src -od '$$(TargetDir)/' $(F90Declare) -mc $(ModuleCase) -ms $(ModSuffix) $(F90Files) > Make.ftemp |
770 |
> |
$(DEV_ROOT)/scripts/filepp -I $(DEV_ROOT)/src -od '$$(TargetDir)/' $(F90Declare) -MM -mc $(ModuleCase) -ms $(ModSuffix) $(F90Files) > Make.ftemp |
771 |
|
@cat Make.ftemp >> $(DependencyFile) |
772 |
|
@$(Delete) Make.ftemp |
773 |
|
|
774 |
|
ifeq "$(UseMPI)" "yes" |
775 |
< |
$(DEV_ROOT)/scripts/filepp -I $(DEV_ROOT)/src -od '$$(ParallelTargetDir)/' $(ParallelDeclare) $(F90Declare) -mc $(ModuleCase) -ms $(ModSuffix) $(F90Files) >> Make.ftemp |
775 |
> |
$(DEV_ROOT)/scripts/filepp -I $(DEV_ROOT)/src -od '$$(ParallelTargetDir)/' $(ParallelDeclare) $(F90Declare) -MM -mc $(ModuleCase) -ms $(ModSuffix) $(F90Files) >> Make.ftemp |
776 |
|
@cat Make.ftemp >> $(DependencyFile) |
777 |
|
@$(Delete) Make.ftemp |
778 |
|
endif |
805 |
|
_installdata : $(MyInstallDir) |
806 |
|
$(Print) $(InstallFiles) |
807 |
|
ifneq "$(words $(InstallFiles))" "0" |
808 |
< |
$(InstallData) $(InstallFiles) $(MyInstallDir) |
808 |
> |
$(InstallCommand) $(InstallFiles) $(MyInstallDir) |
809 |
|
endif |
810 |
< |
|
810 |
> |
|
811 |
|
# make statistics |
812 |
|
_statisticsall : |
813 |
|
@$(Print) $(patsubst %,$(CurrentDir)/%,$(SourceFiles)) >> $(DEV_ROOT)/files.tmp |
826 |
|
|
827 |
|
#make cvslog |
828 |
|
cvslog: |
829 |
< |
$(DEV_ROOT)/scripts/cvs2cl.pl |
829 |
> |
$(DEV_ROOT)/scripts/cvs2cl |
830 |
|
|
831 |
|
# Execute |
832 |
|
_runexe : |