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Comparing trunk/OOPSE-3.0/make/Makefile.in (file contents):
Revision 1508 by gezelter, Wed Sep 29 17:56:08 2004 UTC vs.
Revision 2550 by tim, Thu Jan 12 15:22:34 2006 UTC

# Line 33 | Line 33
33   #  $<      - Current dependency
34   #
35   #---------------------------------------------------------------------------
36 + IS_UNIX=1
37  
38 < Packages = \
39 <        utils \
40 <        math \
41 <        types \
42 <        primitives \
43 <        visitors \
44 <        UseTheForce/DarkSide \
45 <        UseTheForce \
46 <        brains \
47 <        io \
48 <        integrators \
49 <        minimizers \
50 <        constraints \
51 <        profiling \
52 <        restraints \
53 <        applications \
38 > #packages containing libraries
39 > PackageLibs = \
40 >        utils \
41 >        visitors \
42 >        math \
43 >        types \
44 >        primitives \
45 >        UseTheForce/DarkSide \
46 >        UseTheForce \
47 >        brains \
48 >        io \
49 >        integrators\
50 >        constraints \
51 >        minimizers \
52 >        selection \
53 >        restraints \
54 >        lattice \
55 >        openbabel\
56 >        antlr\
57 >        mdParser
58 > #packages containing applications
59 > Applications = \
60 >        applications/oopse \
61 >        applications/dump2Xyz \
62 >        applications/staticProps \
63 >        applications/dynamicProps \
64 >        applications/simpleBuilder\
65 >        applications/nanoRodBuilder \
66 >        applications/atom2mdin
67  
68 + Samples = \
69 +        samples/argon \
70 +        samples/water/dimer \
71 +        samples/water/spce \
72 +        samples/water/ssd \
73 +        samples/water/ssde \
74 +        samples/water/ssdrf \
75 +        samples/water/ssd-ion \
76 +        samples/water/tip3p_ice \
77 +        samples/water/tip4p \
78 +        samples/lipid \
79 +        samples/alkane \
80 +        samples/minimizer \
81 +        samples/metals/EAM \
82 +        samples/metals/EAM/nanoparticle \
83 +        samples/metals/EAM/nanorod \
84 +        samples/metals/Sutton-Chen \
85 +        samples/thermoIntegration/liquid \
86 +        samples/thermoIntegration/solid \
87 +        samples/dipole \
88 +        samples/shape \
89 +        samples/zcons \
90 +
91 + IncludeDirs = \
92 +        @CGAL_INC_DIR@ \
93 +        @MPI_INC_DIR@
94 +
95 + LibraryDirs = \
96 +        @CGAL_LIB_DIR@ \
97 +        @MPI_LIB_DIR@
98 +
99 + Libraries = \
100 +        @LIBS@ \
101 +        @CGAL_LIBS@ \
102 +        @MPI_LIB@ \
103 +        @MPI_F90_LIB@
104 +
105 + OopseHome       = @OOPSE_HOME@
106 + ForceParamDir   = $(OopseHome)/share/forceFields
107 + SampleSimDir    = $(OopseHome)/share/samples
108 + InstallBinDir   = $(OopseHome)/bin
109 + DocDir          = $(OopseHome)/doc
110 + FrcDeclare      = -DFRC_PATH="$(ForceParamDir)"
111 + F90Declare      = -D__FORTRAN90
112 + ParallelDeclare = -DIS_MPI
113 + UseMPI          = @USE_MPI@
114 + ModuleCase      = @F90_MODULE_NAMES@
115 + ModSuffix       = @MOD@
116 + LinkOptions = \
117 +        @FCLIBS@
118 +
119 + ParallelLinkOptions = \
120 +        @FCLIBS@
121 +
122 +
123   #---------------------------------------------------------------------------
124   #
125   #  Directories
126   #
127   #---------------------------------------------------------------------------
128  
60 – srcdir = @srcdir@
129   SourceDir         = $(DEV_ROOT)/src
130   TargetDir         = $(DEV_ROOT)/obj
131   ParallelTargetDir = $(DEV_ROOT)/MPIobj
132   LibDir            = $(DEV_ROOT)/lib
133   MakeDir           = $(DEV_ROOT)/make
134 + MainMakefile      = $(MakeDir)/Makefile
135   BinDir            = $(DEV_ROOT)/bin
136   DocsDir           = $(DEV_ROOT)/docs
137   CurrentDir        = $(CURDIR)
138 + CombinedStaticLib = $(LibDir)/libOOPSE.a
139 + CombinedParallelStaticLib = $(LibDir)/libOOPSE_MPI.a
140  
141   ifdef Source
142 < Package                  = $(subst $(SourceDir)/,,$(CurrentDir))
142 > #get the relative path of current package to source directory
143 > # /home/maul/gezelter/src/code/src/UseTheForce/Darkside --> UseTheForce/Darkside
144 > #Package          = $(shell echo $(CurrentDir) | sed -e 's/^.*\/src\/\(.*\)/\1/g')
145 > #use shell script to get the absolute path and then rip it off from $(CurrentDir)
146 > #Package          = $(subst $(shell cd $(SourceDir); pwd)/,,$(CurrentDir))
147 > # REMINDER: We are now using the Package line in each subdir makefile.
148 > # This avoids the strange path problem and the subshell
149 >
150   PackageList              = $(Package)
151   PackageSourceDir         = $(SourceDir)/$(Package)
152   PackageTargetDir         = $(TargetDir)
153   PackageParallelTargetDir = $(ParallelTargetDir)
154   JavaMainClass            = $(subst /,.,$(Package)).$(Main)
155   else
156 < PackageList              = $(Packages) $(JavaPackages)
156 > PackageList              = $(PackageLibs) $(JavaPackages) $(Applications)
157   endif
158  
159 < PackageListLoop  = $(patsubst %,$(SourceDir)/%/.loop,$(PackageList))
159 > PackageListLoop          = $(patsubst %,$(SourceDir)/%/.loop,$(PackageList))
160  
161 < JRE              = $(JAVA_HOME)/jre/lib/rt.jar
161 > JRE                      = $(JAVA_HOME)/jre/lib/rt.jar
162  
163   ifdef IS_UNIX
164   X = :
# Line 108 | Line 186 | SourceFiles            = $(JavaFiles:%.java=  $(Packag
186                                        $(YaccFiles) $(CorbaFiles), \
187                                        $(Source))
188   ManifestFile           = $(PackageSourceDir)/Manifest
111 – SourceFiles            = $(JavaFiles:%.java=  $(PackageSourceDir)/%.java)\
112 –                         $(CppFiles:%.cpp=    $(PackageSourceDir)/%.cpp)\
113 –                         $(CFiles:%.c=        $(PackageSourceDir)/%.c)\
114 –                         $(FortranFiles:%.f=  $(PackageSourceDir)/%.f)\
115 –                         $(F90Files:%.F90=    $(PackageSourceDir)/%.F90)\
116 –                         $(LexFiles:%.l=      $(PackageSourceDir)/%.l)\
117 –                         $(YaccFiles:%.y=     $(PackageSourceDir)/%.y)\
189  
190 + SourceFiles            = $(JavaFiles)\
191 +                         $(CppFiles)\
192 +                         $(CFiles)\
193 +                         $(FortranFiles)\
194 +                         $(F90Files)\
195 +                         $(LexFiles)\
196 +                         $(YaccFiles)
197  
198   # Target
199   JavaClassFiles         = $(JavaFiles:%.java=  $(PackageTargetDir)/%.class)
# Line 125 | Line 203 | ObjectFiles            = $(CFiles:%.c=        $(Packag
203   JniClassFiles          = $(JniSource:%.java=  $(PackageTargetDir)/%.class)
204   JniHeaders             = $(JniSource:%.java=  $(PackageSourceDir)/%.h)
205   ObjectFiles            = $(CFiles:%.c=        $(PackageTargetDir)/%.o)\
206 <                         $(CppFiles:%.cpp=    $(PackageTargetDir)/%.o)\
206 >                         $(CppFiles:%.cpp=    $(PackageTargetDir)/%.o)\
207                           $(FortranFiles:%.f=  $(PackageTargetDir)/%.o)\
208                           $(F90Files:%.F90=    $(PackageTargetDir)/%.o)\
209                           $(LexFiles:%.l=      $(PackageTargetDir)/%.o)\
# Line 146 | Line 224 | ThirdPartyJarsTmp = $(patsubst %,$(LibDir)/%,$(JavaLib
224  
225   OtherTargetFiles       = $(OtherSourceFiles:%=$(PackageTargetDir)/%)
226  
227 + ###########################################################################
228 + #
229 + # Figure out the names of the module files based on some work done by
230 + # configure.  The tr function below is from John Graham-Cumming
231 + # (http://www.jgc.org).
232 + #
233 + # The tr function.   Has three arguments:
234 + #
235 + # $1   The list of characters to translate from
236 + # $2   The list of characters to translate to
237 + # $3   The text to translate
238 + #
239 + # For example, $(call tr,A B C,1 2 3,CAPITAL) becomes 21PIT1L.
240 +
241 + tr = $(eval __t := $3)                                                    \
242 +     $(foreach c,                                                         \
243 +         $(join $(addsuffix :,$1),$2),                                    \
244 +         $(eval __t :=                                                    \
245 +             $(subst $(word 1,$(subst :, ,$c)),$(word 2,$(subst :, ,$c)), \
246 +                 $(__t))))$(__t)
247 +
248 + # Common character classes for use with the tr function.  Each of
249 + # these is actually a variable declaration and must be wrapped with
250 + # $() or ${} to be used.
251 +
252 + [A-Z] := A B C D E F G H I J K L M N O P Q R S T U V W X Y Z #
253 + [a-z] := a b c d e f g h i j k l m n o p q r s t u v w x y z #
254 + [0-9] := 0 1 2 3 4 5 6 7 8 9 #
255 + [A-F] := A B C D E F #
256 +
257 + # Figure out whether we have $(eval) or not (GNU Make 3.80 and above)
258 + # if we do not then we need to use the shell version of tr, and not the
259 + # faster tr function above:
260 +
261 + __have_eval := $(false)
262 + __ignore := $(eval __have_eval := $(true))
263 +
264 + ifndef __have_eval
265 +  uc = $(shell echo $1 | tr "a-z" "A-Z")
266 +  lc = $(shell echo $1 | tr "A-Z" "a-z")
267 + else
268 +  uc = $(call tr,$([a-z]),$([A-Z]),$1)
269 +  lc = $(call tr,$([A-Z]),$([a-z]),$1)
270 + endif
271 +
272 + # OK, now we can actually use these functions to figure out the names
273 + # of the module files:
274 +
275 + ifneq "$(words $(Modules))" "0"
276 + ifeq "$(ModuleCase)" "UPPER"
277 +  MODULES = $(call uc,$(Modules))
278 + else
279 +  ifeq "$(ModuleCase)" "lower"
280 +    MODULES = $(call lc,$(Modules))
281 +  else
282 +    MODULES = $(Modules)
283 +  endif
284 + endif
285 +  ModuleFiles = $(MODULES:%= $(PackageTargetDir)/%.$(ModSuffix))
286 +  ParallelModuleFiles = $(MODULES:%= $(PackageParallelTargetDir)/%.$(ModSuffix))
287 + endif
288 + #
289 + ###########################################################################
290 +
291   ThirdPartyJarsTmp = $(patsubst %,$(LibDir)/%,$(JavaLibraries))
292   ThirdPartyJars    = $(subst $(Space),$(X),$(ThirdPartyJarsTmp))
293  
# Line 157 | Line 299 | ifneq  "$(words $(ObjectFiles) $(ParallelObjectFiles))
299   #if Main is defined, do not build library. It may not be true sometimes
300   ifneq  "$(words $(ObjectFiles) $(ParallelObjectFiles))" "0"
301    DependencyFile    = $(PackageSourceDir)/Makedepend
302 <  ifneq "$(Main)" ""
303 <    Executable        = $(BinDir)/$(Main)
304 <    ParallelExecutable     = $(BinDir)/$(Main)_MPI
302 >  ifneq "$(words $(Main))" "0"
303 >    Executable             = $(BinDir)/$(Main)
304 >    ifeq "$(BuiltParallelExe)" "1"
305 >      ParallelExecutable     = $(BinDir)/$(Main)_MPI
306 >    endif
307    else
308 <    SharedLibrary     = $(LibDir)/lib$(subst /,,$(Package)).so
309 <    StaticLibrary     = $(LibDir)/lib$(subst /,,$(Package)).a
310 <    ParallelSharedLibrary  = $(LibDir)/lib$(subst /,,$(Package))_MPI.so
311 <    ParallelStaticLibrary  = $(LibDir)/lib$(subst /,,$(Package))_MPI.a
308 >    SharedLibrary          = $(LibDir)/lib$(subst /,,$(patsubst %,oopse_%,$(Package)))_UP.so
309 >    StaticLibrary          = $(LibDir)/lib$(subst /,,$(patsubst %,oopse_%,$(Package)))_UP.a
310 >    ParallelSharedLibrary  = $(LibDir)/lib$(subst /,,$(patsubst %,oopse_%,$(Package)))_MPI.so
311 >    ParallelStaticLibrary  = $(LibDir)/lib$(subst /,,$(patsubst %,oopse_%,$(Package)))_MPI.a
312    endif
313   endif
314 +
315   #
316   # Misc
317   #
# Line 174 | Line 319 | LocalLibs        = $(subst /,,$(Packages))
319   JavaPackageNames = $(subst /,.,$(JavaPackages))
320   IncludePath      = -I$(SourceDir) $(IncludeDirs:%=-I%)
321   LibDirs          = -L$(LibDir)    $(LibraryDirs:%=-L%)
322 < LocalLibs        = $(subst /,,$(Packages))
323 < LibList          = $(LocalLibs:%=-l%) $(Libraries:%=-l%)
322 > LocalLibs        = $(subst /,,$(patsubst %, oopse_%_UP, $(PackageLibs)))
323 > ParallelLocalLibs= $(subst /,,$(patsubst %, oopse_%_MPI, $(PackageLibs)))
324 > LibList          = $(LocalLibs:%=-l%) $(Libraries)
325 > LibNames         = $(LocalLibs:%=$(LibDir)/lib%.a)
326 > ParallelLibList  = $(ParallelLocalLibs:%=-l%) $(Libraries)
327 > ParallelLibNames = $(ParallelLocalLibs:%=$(LibDir)/lib%.a)
328  
329  
330   #---------------------------------------------------------------------------
# Line 184 | Line 333 | Move                   = mv
333   #
334   #---------------------------------------------------------------------------
335   Print                  = @echo
336 < Move                   = mv
336 > Move                   = mv -f
337   Copy                   = cp
338   CCompiler              = @CC@
339   CppCompiler            = @CXX@
340   Linker                 = @CXX@
341   MakeDepend             = makedepend
342 < Install                = @INSTALL@
342 > LN_S                   = @LN_S@
343 > INSTALL                = @INSTALL@
344 > EGREP                  = @EGREP@
345   InstallProgram         = @INSTALL_PROGRAM@
346 + InstallScript          = @INSTALL_SCRIPT@
347   InstallData            = @INSTALL_DATA@
348 < MakeDir                = @MKINSTALLDIRS@
349 < Delete                 = rm -fr
348 > MkDir                  = @MKINSTALLDIRS@
349 > Delete                 = rm -f
350   StaticArchiver         = @AR@
351   DynamicArchiver        = @CC@
352   FortranCompiler        = @FC@
201 – F90Compiler            = @F90@
353   JavaCompiler           = $(JAVA_HOME)/bin/javac
354   JavaArchiver           = $(JAVA_HOME)/bin/jar
355   JarSigner              = $(JAVA_HOME)/bin/jarsigner
# Line 211 | Line 362 | Lex                    = @LEX@
362   List                   = cat
363   Yacc                   = @YACC@
364   Lex                    = @LEX@
365 + Ranlib                 = @RANLIB@
366 + Doxygen                = @DOXYGEN@
367  
368 <
216 < MakeOptions            = -k -s
368 > MakeOptions            = -k
369   MakeDependOptions      =
370   StaticArchiverOptions  = rc
371   DynamicArchiverOptions = -shared
# Line 221 | Line 373 | FortranOptions         =
373   JniOptions             =
374   RmiOptions             = -d $(TargetDir) -classpath $(ClassPath) \
375                           -sourcepath $(SourceDir)
376 < FortranOptions         =
377 < F90Options             =  -I$(SourceDir) -module $(TargetDir)
376 > COptions               = $(FrcDeclare) @CFLAGS@
377 > CParallelOptions       = $(FrcDeclare) $(ParallelDeclare) @CFLAGS@
378 > CppOptions             = $(FrcDeclare) @CXXFLAGS@
379 > CppParallelOptions     = $(FrcDeclare) $(ParallelDeclare) @CXXFLAGS@
380 > FortranOptions         =  @FCFLAGS@ @MODDIRFLAG@$(SourceDir) @MODDIRFLAG@$(TargetDir) @FCFLAGS_SRCEXT@
381 > FortranParallelOptions =  @FCFLAGS@ @MODDIRFLAG@$(SourceDir) @MODDIRFLAG@$(ParallelTargetDir) @PREPDEFFLAG@$(ParallelDeclar) @FCFLAGS_SRCEXT@
382   JavaCompilerOptions    = -d $(TargetDir) -classpath $(ClassPath) \
383                           -sourcepath $(SourceDir) -deprecation
384   JavaRunOptions         = -classpath $(ClassPath)
# Line 248 | Line 404 | Space                  = $(Empty) $(Empty)
404  
405   #---------------------------------------------------------------------------
406   #
407 + #  Install
408 + #
409 + #---------------------------------------------------------------------------
410 +
411 + ifneq "$(words $(SampleFiles))" "0"
412 +  MySample                 = $(subst $(shell cd $(DEV_ROOT)/samples; pwd)/,,$(CurrentDir))
413 +  MyInstallDir             = $(SampleSimDir)/$(MySample)
414 +  InstallFiles             = $(SampleFiles)
415 +  InstallCommand           = $(InstallData)
416 + endif
417 +
418 + ifneq "$(words $(Main))" "0"
419 +  MyInstallDir             = $(InstallBinDir)
420 +  ifeq "$(UseMPI)" "yes"
421 +    InstallFiles             = $(Executable) $(ParallelExecutable)
422 +  else
423 +    InstallFiles             = $(Executable)
424 +  endif
425 +  InstallCommand           = $(InstallProgram)
426 +  ifneq "$(words $(LinkTargets))" "0"
427 +    MyLinkSource = $(patsubst %, $(MyInstallDir)/%,$(Main))
428 +    MyLinkTargets = $(patsubst %, $(MyInstallDir)/%,$(LinkTargets))
429 +  endif
430 + endif
431 +
432 + ifneq "$(words $(ForcefieldFiles))" "0"
433 +  MyInstallDir             = $(ForceParamDir)
434 +  InstallFiles             = $(ForcefieldFiles)
435 +  InstallCommand           = $(InstallData)
436 + endif
437 +
438 + ifneq "$(words $(InstallFiles))" "0"
439 +  InstallList            =
440 + else
441 +  InstallList            = $(patsubst %,$(DEV_ROOT)/%,$(Samples)) $(DEV_ROOT)/forceFields $(patsubst %, $(SourceDir)/%,$(Applications))
442 + endif
443 +
444 + InstallListLoop          = $(patsubst %,$(SourceDir)/%/.install,$(PackageList))  $(patsubst %,%/.install,$(InstallList))
445 +
446 +
447 +
448 + #---------------------------------------------------------------------------
449 + #
450   # Rules
451   #
452   #---------------------------------------------------------------------------
# Line 258 | Line 457 | $(PackageTargetDir) :
457  
458   # Create target directory
459   $(PackageTargetDir) :
460 <        $(MakeDir) $@
460 >        $(MkDir) $@
461  
462 + $(BinDir) :
463 +        $(MkDir) $@
464 +
465   # .c -> .o
466 < $(PackageTargetDir)/%.o : $(PackageSourceDir)/%.c
466 > $(PackageTargetDir)/%.o : %.c $(MainMakefile)
467          $(Print) $@
468 <        $(Print) $(CCompiler) $(COptions) -c $(IncludePath) $< -o $@
267 <        @$(CCompiler) $(COptions) -c $(IncludePath) $< -o $@
468 >        $(CCompiler) $(COptions) -c $(IncludePath) $< -o $@
469  
470 < %.o : $(PackageSourceDir)/%.c
470 > $(PackageParallelTargetDir)/%.o : %.c $(MainMakefile)
471 >        $(Print) $@
472 >        $(CCompiler) $(CParallelOptions) -c $(IncludePath) $< -o $@
473 >
474 > ifeq "$(UseMPI)" "yes"
475 > %.o : %.c $(MainMakefile)
476          $(MAKE) $(MakeOptions) $(PackageTargetDir)/$@
477 +        $(MAKE) $(MakeOptions) $(PackageParallelTargetDir)/$@
478 + else
479 + %.o : %.c $(MainMakefile)
480 +        $(MAKE) $(MakeOptions) $(PackageTargetDir)/$@
481 + endif
482  
483   # .cpp -> .o
484 < $(PackageTargetDir)/%.o : $(PackageSourceDir)/%.cpp
274 <        $(Print) $@
275 <        $(Print) $(CppCompiler) $(CppOptions) -c $(IncludePath) $< -o $@
484 > $(PackageTargetDir)/%.o : %.cpp $(MainMakefile)
485          $(CppCompiler) $(CppOptions) -c $(IncludePath) $< -o $@
486  
487 < %.o : $(PackageSourceDir)/%.cpp
487 > $(PackageParallelTargetDir)/%.o : %.cpp $(MainMakefile)
488 >        $(CppCompiler) $(CppParallelOptions) -c $(IncludePath) $< -o $@
489 >
490 > ifeq "$(UseMPI)" "yes"
491 > %.o : %.cpp $(MainMakefile)
492          $(MAKE) $(MakeOptions) $(PackageTargetDir)/$@
493 +        $(MAKE) $(MakeOptions) $(PackageParallelTargetDir)/$@
494 + else
495 + %.o : %.cpp $(MainMakefile)
496 +        $(MAKE) $(MakeOptions) $(PackageTargetDir)/$@
497 + endif
498  
499   # .f -> .o
500 < $(PackageTargetDir)/%.o : $(PackageSourceDir)/%.f
501 <        $(Print) $@
284 <        $(Print) $(FortranCompiler) $(FortranOptions) -c $< -o $@
285 <        @$(FortranCompiler) $(FortranOptions) -c $< -o $@
500 > $(PackageTargetDir)/%.o : %.f $(MainMakefile)
501 >        $(FortranCompiler) $(FortranOptions) -c $< -o $@
502  
503 < %.o : $(PackageSourceDir)/%.f
503 > $(PackageParallelTargetDir)/%.o : %.f $(MainMakefile)
504 >        $(FortranCompiler) $(FortranParallelOptions) -c $< -o $@
505 >
506 > ifeq "$(UseMPI)" "yes"
507 > %.o : %.f $(MainMakefile)
508          $(MAKE) $(MakeOptions) $(PackageTargetDir)/$@
509 +        $(MAKE) $(MakeOptions) $(PackageParallelTargetDir)/$@
510 + else
511 + %.o : %.f $(MainMakefile)
512 +        $(MAKE) $(MakeOptions) $(PackageTargetDir)/$@
513 + endif
514  
515   # .F90 -> .o
516 < $(PackageTargetDir)/%.o : $(PackageSourceDir)/%.F90
517 <        $(Print) $@
518 <        $(Print) $(F90Compiler) $(F90Options) -c $< -o $@
519 <        @$(F90Compiler) $(F90Options) -c $< -o $@
516 > $(PackageTargetDir)/%.o : %.F90 $(MainMakefile)
517 >        $(FortranCompiler) $(FortranOptions) $(IncludePath) -c $< -o $@
518 >        if test -n "`ls *.$(ModSuffix)`"; then \
519 >          $(Move) `ls *.$(ModSuffix)` $(PackageTargetDir);\
520 >        fi
521  
522 < %.o : $(PackageSourceDir)/%.F90
522 > $(PackageParallelTargetDir)/%.o : %.F90 $(MainMakefile)
523 >        $(FortranCompiler) $(FortranParallelOptions) $(IncludePath) -c $< -o $@
524 >        if test -n "`ls *.$(ModSuffix)`"; then \
525 >          $(Move) "`ls *.$(ModSuffix)`" $(PackageParallelTargetDir);\
526 >        fi
527 >
528 > ifeq "$(UseMPI)" "yes"
529 > %.o : %.F90 $(MainMakefile)
530          $(MAKE) $(MakeOptions) $(PackageTargetDir)/$@
531 +        if test -n "`ls *.$(ModSuffix)`"; then\
532 +          $(Move) "`ls *.$(ModSuffix)`" $(PackageTargetDir);\
533 +        fi
534  
535 +        $(MAKE) $(MakeOptions) $(PackageParallelTargetDir)/$@
536 +        if test -n "`ls *.$(ModSuffix)`"; then\
537 +          $(Move) "`ls *.$(ModSuffix)`" $(PackageTargetDir);\
538 +        fi
539 +
540 + else
541 + %.o : %.F90 $(MainMakefile)
542 +        $(MAKE) $(MakeOptions) $(PackageTargetDir)/$@
543 +        if test -n "`ls *.$(ModSuffix)`"; then\
544 +          $(Move) "`ls *.$(ModSuffix)`" $(PackageTargetDir);\
545 +        fi
546 + endif
547 +
548 +
549   # .java -> .class
550   $(PackageTargetDir)/%.class : $(PackageSourceDir)/%.java
551 <        $(Print) $@
302 <        $(Print) $(JavaCompiler) $(JavaCompilerOptions) $<
303 <        @$(JavaCompiler) $(JavaCompilerOptions) $<
551 >        $(JavaCompiler) $(JavaCompilerOptions) $<
552  
553   %.class : $(PackageSourceDir)/%.java
554          @$(MAKE) $(MakeOptions) $(PackageTargetDir)/$@
555  
556   # .class -> .h
557   $(PackageSourceDir)/%.h : $(PackageTargetDir)/%.class
310 –        $(Print) $@
311 –        $(Print) $(JniCompiler) $(JniOptions) $(JavaPackageName).$*
558          $(JniCompiler) $(JniOptions) $(JavaPackageName).$*
559  
560   %.h : %.class
561          $(MAKE) $(MakeOptions) $(PackageSourceDir)/$@
562  
563   #.y -> .h
564 < $(PackageSourceDir)/%.h : $(PackageSourceDir)/%.y
565 <        $(Print) $@
320 <        $(Print) @$(Yacc) -d $?
321 <        @$(Yacc) -d  $?
564 > %.h : %.y
565 >        $(Yacc) -d  $?
566          @$(Move) y.tab.h $*.h
567          @$(Delete) y.tab.c
568  
569   #.y -> .c
570 < $(PackageSourceDir)/%.c : $(PackageSourceDir)/%.y
571 <        $(Print) $@
328 <        $(Print) $(Yacc) -d $?
329 <        @$(Yacc) -d  $?
570 > %.c : %.y
571 >        $(Yacc) -d  $?
572          @$(Move) y.tab.c $*.c
573          @$(Delete) y.tab.h
574  
575   # .l -> .c
576 < $(PackageSourceDir)/%.c : $(PackageSourceDir)/%.l
576 > %.c : %.l
577          $(Print) $@
578          $(Print) $(Lex) -o$@ $?
579          @$(Lex) -o$@ $?
580  
581   # .o -> .a
340 – $(LibDir)/%.a : $(ObjectFiles)
341 –        $(Print) $@
342 –        $(Print) $(StaticArchiver) $(StaticArchiverOptions) $@ $(ObjectFiles)
343 –        @$(StaticArchiver) $(StaticArchiverOptions) $@ $(ObjectFiles)
582  
583 < %.a : $(ObjectFiles)
584 <        $(MAKE) $(MakeOptions) $(LibDir)/$@
583 > $(LibDir)/%_UP.a : $(ObjectFiles)
584 >        $(StaticArchiver) $(StaticArchiverOptions) $@ $(ObjectFiles)
585 >        @touch $(LibDir)/.stamp_UP
586  
587 < $(LibDir)/%_MPI.a : $(ParallelObjectFiles)
588 <        $(Print) $@
589 <        $(Print) $(StaticArchiver) $(StaticArchiverOptions) $@ $(ParallelObjectFiles)
351 <        @$(StaticArchiver) $(StaticArchiverOptions) $@ $(ParallelObjectFiles)
587 > $(LibDir)/%_MPI.a: $(ParallelObjectFiles)
588 >        $(StaticArchiver) $(StaticArchiverOptions) $@ $(ParallelObjectFiles)
589 >        @touch $(LibDir)/.stamp_MPI
590  
591 + %_UP.a : $(ObjectFiles)
592 +        $(MAKE) $(MakeOptions) $(LibDir)/$@
593 +
594   %_MPI.a : $(ParallelObjectFiles)
595          $(MAKE) $(MakeOptions) $(LibDir)/$@
596  
597   # .o -> .so
598 < $(LibDir)/%.so : $(ObjectFiles)
358 <        $(Print) $@    
359 <        $(Print) $(DynamicArchiver) $(ObjectFiles) $(DynamicArchiverOptions) -o $@
598 > $(LibDir)/%_UP.so : $(ObjectFiles)
599          $(DynamicArchiver) $(ObjectFiles) $(DynamicArchiverOptions) -o $@
600  
362 – %.so : $(ObjectFiles)
363 –        $(MAKE) $(MakeOptions) $(LibDir)/$@
364 –
601   $(LibDir)/%_MPI.so : $(ParallelObjectFiles)
366 –        $(Print) $@    
367 –        $(Print) $(DynamicArchiver) $(ParallelObjectFiles) $(DynamicArchiverOptions) -o $@
602          $(DynamicArchiver) $(ParallelObjectFiles) $(DynamicArchiverOptions) -o $@
603  
604 + %_UP.so : $(ObjectFiles)
605 +        $(MAKE) $(MakeOptions) $(LibDir)/$@
606 +
607   %_MPI.so : $(ParallelObjectFiles)
608          $(MAKE) $(MakeOptions) $(LibDir)/$@
609  
610   # .class -> .jar
611   $(LibDir)/%.jar : $(JavaClassFiles) $(OtherTargetFiles)
612          $(Print) $@
376 –        $(Print) $(JavaArchiver) -cf $@ $(JavaClassFilesRel) $(OtherTargetFiles)
613          @cd $(TargetDir); $(JavaArchiver) -cf $@ \
614          $(JavaClassFilesRel) $(OtherTargetFiles)
615  
# Line 403 | Line 639 | $(PackageTargetDir)/%_Skel.class : $(PackageTargetDir)
639   %_Skel.class : %.class
640          $(MAKE) $(MakeOptions) $(PackageTargetDir)/$@
641  
642 + document :
643 +        $(Print) Generate Documentation for OOPSE-2.0
644 +        @cd $(DEV_ROOT)/src    
645 +        $(Doxygen) $(DEV_ROOT)/make/Doxyfile
646 +
647 + #GUN make funtions to merge the libraries
648 + find_objs = $(shell $(StaticArchiver) -t $(1) | $(EGREP) -v "SYMDEF")
649 + extract_objs = $(shell $(StaticArchiver) -x $(1) $(call find_objs, $(1)))
650 + create_archive = $(shell  $(StaticArchiver) $(StaticArchiverOptions) $(2) $(call find_objs, $(1)))
651 + remove_objs = $(shell $(Delete) $(call find_objs, $(1)))
652 + do_create = $(call extract_objs,$(1))$(call create_archive,$(1),$(2))$(call remove_objs,$(1))  
653 + do_link = $(shell $(LN_S) $(1) $(2))
654 + all_objs = $(foreach thisLib,$(LibNames), $(call find_objs, $(thisLib)))
655 + all_parallel_objs = $(foreach thisLib,$(ParallelLibNames), $(call find_objs, $(thisLib)))
656 + all_lib_objs = $(patsubst %,$(TargetDir)/%,$(call all_objs))
657 + all_lib_parallel_objs = $(patsubst %,$(ParallelTargetDir)/%,$(call all_parallel_objs))
658 +
659 + $(CombinedStaticLib) : $(LibDir)/.stamp_UP
660 +        $(Print) creating $@            
661 +        $(StaticArchiver) $(StaticArchiverOptions) $@ $(call all_lib_objs)
662 +        $(Ranlib) $(CombinedStaticLib)
663 +
664 + $(CombinedParallelStaticLib) : $(LibDir)/.stamp_MPI
665 +        $(Print) creating $@
666 +        $(StaticArchiver) $(StaticArchiverOptions) $@ $(call all_lib_parallel_objs)
667 +        $(Ranlib) $(CombinedParallelStaticLib)
668 +
669   # Executable
670 < $(Executable) : $(ObjectFiles)
671 <        $(Print) $@
409 <        $(Linker) $(LinkOptions) $(LibDirs) $(LibList) $(ObjectFiles) -o $@
670 > $(Executable) : $(CombinedStaticLib) $(ObjectFiles) $(BinDir)
671 >        $(Linker) $(ObjectFiles) $(CombinedStaticLib) $(LinkOptions) $(LibDirs) $(Libraries) -o $@
672  
673 < $(ParallelExecutable) : $(ParallelObjectFiles)
674 <        $(Print) $@
413 <        $(Linker) $(LinkOptions) $(LibDirs) $(LibList) $(ParallelObjectFiles) -o $@
673 > $(ParallelExecutable) : $(CombinedParallelStaticLib) $(ParallelObjectFiles) $(BinDir)
674 >        $(Linker) $(ParallelObjectFiles) $(CombinedParallelStaticLib) $(ParallelLinkOptions) $(LibDirs) $(Libraries) -o $@
675  
676   # Anything else is just copied from source to target
677   $(PackageTargetDir)/% : $(PackageSourceDir)/%
# Line 423 | Line 684 | _buildall : \
684  
685   _all : _buildall
686  
687 + _buildall :
688 + ifeq "$(UseMPI)" "yes"
689   _buildall : \
690          $(DependencyFile) \
691          $(PackageTargetDir) \
692          $(ObjectFiles) \
693 +        $(ParallelObjectFiles) \
694          $(JavaClassFiles) \
695          $(RmiStubFiles) \
696          $(RmiSkeletonFiles) \
697          $(OtherTargetFiles) \
434 –        $(SharedLibrary) \
698          $(StaticLibrary) \
699 +        $(ParallelStaticLibrary) \
700          $(JarFile) \
701 <        $(Executable)
701 >        $(Executable) \
702 >        $(ParallelExecutable)
703 > else
704 > _buildall : \
705 >        $(DependencyFile) \
706 >        $(PackageTargetDir) \
707 >        $(ObjectFiles) \
708 >        $(JavaClassFiles) \
709 >        $(RmiStubFiles) \
710 >        $(RmiSkeletonFiles) \
711 >        $(OtherTargetFiles) \
712 >        $(StaticLibrary) \
713 >        $(JarFile) \
714 >        $(Executable)
715 > endif
716  
717 + echo : $(PackageListLoop)
718 +        $(Print) Done echo.
719  
720 + _echoall :
721 +        $(Print) $(Modules)
722 +
723   # make clean
724   clean : $(PackageListLoop)
725          $(Print) Done clean.    
726  
727   _cleanall :
728 <        $(Delete) $(PackageTargetDir)/* \
729 <                  $(JarFile) \
730 <                  $(SharedLibrary) \
731 <                  $(StaticLibrary) \
732 <                  $(Executable) \
733 <                  $(DependencyFile)
728 >        $(Delete) \
729 >                $(ObjectFiles) \
730 >                $(ModuleFiles) \
731 >                $(ParallelObjectFiles) \
732 >                $(ParallelModuleFiles) \
733 >                $(JarFile) \
734 >                $(SharedLibrary) \
735 >                $(StaticLibrary) \
736 >                $(ParallelSharedLibrary) \
737 >                $(ParallelStaticLibrary) \
738 >                $(CombinedStaticLib) \
739 >                $(CombinedParallelStaticLib)
740  
741 + # make distclean
742 + distclean : $(PackageListLoop)
743 +        $(Print) Done clean.    
744  
745 + _distcleanall : _cleanall
746 +        $(Delete) $(Executable) \
747 +                  $(ParallelExecutable) \
748 +                  $(DependencyFile)
749 +
750   # make depend
751   depend : $(PackageListLoop)
752          $(Print) Done dependencies.
# Line 459 | Line 756 | $(DependencyFile) : $(DerivedSource)
756   $(DependencyFile) : $(DerivedSource)
757          $(Print) $@
758          @cd $(PackageSourceDir)
759 <        touch Make.temp
760 < ifdef $(CppFiles)
761 <        $(CppCompiler) $(IncludePath) -MM $(CppFiles)  > Make.temp
759 >
760 > ifneq "$(words $(CppFiles))" "0"
761 >        $(DEV_ROOT)/scripts/filepp  -I $(DEV_ROOT)/src -od '$$(TargetDir)/' -MM $(CppFiles)>> Make.cpptemp
762 >        @cat Make.cpptemp  >> $(DependencyFile)
763 >        $(Delete) Make.cpptemp
764 >
765 >  ifeq "$(UseMPI)" "yes"
766 >        $(DEV_ROOT)/scripts/filepp  -I $(DEV_ROOT)/src -od '$$(ParallelTargetDir)/' $(ParallelDeclare) -MM $(CppFiles)>> Make.cpptemp
767 >        @cat Make.cpptemp  >> $(DependencyFile)
768 >        @$(Delete) Make.cpptemp
769 >  endif
770 >
771   endif
772 < ifdef $(CFiles)
773 <        $(CCompiler)   $(IncludePath) -MM $(CFiles) $(DerivedCFiles)   >> Make.temp
772 >
773 > ifneq "$(words $(CFiles))" "0"
774 >        $(DEV_ROOT)/scripts/filepp  -I $(DEV_ROOT)/src -od '$$(TargetDir)/'  -MM $(CFiles) $(DerivedCFiles)  >> Make.ctemp
775 >        @cat Make.ctemp  >> $(DependencyFile)
776 >        $(Delete) Make.ctemp
777 >
778 >  ifeq "$(UseMPI)" "yes"
779 >        $(DEV_ROOT)/scripts/filepp  -I $(DEV_ROOT)/src -od '$$(ParallelTargetDir)/' $(ParallelDeclare) -MM $(CFiles) $(DerivedCFiles)  >> Make.ctemp
780 >        @cat Make.ctemp  >> $(DependencyFile)
781 >        @$(Delete) Make.ctemp
782 >  endif
783 >
784   endif
785 <        cat Make.temp | sed 's/^[a-zA-Z0-9]/$$\(DEV_ROOT\)\/obj\/&/g' >> $(DependencyFile)
786 <        cat Make.temp | sed 's/^[a-zA-Z0-9]/$$\(DEV_ROOT\)\/MPIobj\/&/g' >> $(DependencyFile)
787 <        echo $(F90Files)
788 < ifdef $(F90Files)
789 <        $(DEV_ROOT)/scripts/sfmakedepend  -I $(DEV_ROOT)/src -d '$$(DEV_ROOT)/obj' -f ./Make.ftemp -h *.F90
790 <        cat Make.ftemp >> $(DependencyFile)
785 >
786 > ifneq "$(words $(F90Files))" "0"
787 >        $(DEV_ROOT)/scripts/filepp  -I $(DEV_ROOT)/src -od '$$(TargetDir)/' $(F90Declare) -MM -mc $(ModuleCase) -ms $(ModSuffix) $(F90Files) > Make.ftemp
788 >        @cat Make.ftemp >> $(DependencyFile)
789 >        @$(Delete) Make.ftemp
790 >
791 >  ifeq "$(UseMPI)" "yes"
792 >        $(DEV_ROOT)/scripts/filepp  -I $(DEV_ROOT)/src -od '$$(ParallelTargetDir)/' $(ParallelDeclare) $(F90Declare) -MM -mc $(ModuleCase) -ms $(ModSuffix)  $(F90Files) >> Make.ftemp
793 >        @cat Make.ftemp >> $(DependencyFile)
794 >        @$(Delete) Make.ftemp
795 >  endif
796 >
797   endif
476 –        $(Delete) Make.temp Make.ftemp
798  
799   # make lib
800   lib    : $(PackageListLoop)
# Line 486 | Line 807 | jarsign : $(JarFile)
807   jarsign : $(JarFile)
808          $(JarSigner) -keystore GeoSoftKeystore $(JarFile) myself
809  
810 + #make install
811 + %.install :
812 +        @$(MAKE) $(MakeOptions) -C $(subst .install,,$@) _installall    
813 +
814 + install : $(InstallListLoop)
815 +        $(Print) Done Install
816 +
817 + _installall : _buildall _installdata _installlinks
818 +
819 + $(MyInstallDir) :
820 +        $(MkDir) $@
821 +
822 + _installdata :  $(MyInstallDir)
823 +        $(Print) $(InstallFiles)
824 + ifneq "$(words $(InstallFiles))" "0"
825 +        $(InstallCommand) $(InstallFiles) $(MyInstallDir)
826 + endif      
827 +
828 + _installlinks :  $(MyInstallDir)
829 + ifneq "$(words $(MyLinkTargets))" "0"
830 +        @cd $(MyInstallDir)
831 +        $(foreach thisLink,$(MyLinkTargets),$(call do_link,$(MyLinkSource),$(thisLink)))
832 + endif      
833 +
834   # make statistics
835   _statisticsall :
836 <        @$(Print) $(SourceFiles) >> $(DEV_ROOT)/files.tmp
836 >        @$(Print) $(patsubst %,$(CurrentDir)/%,$(SourceFiles)) >> $(DEV_ROOT)/files.tmp
837  
838   statistics : $(PackageListLoop)
839          @$(List) $(DEV_ROOT)/files.tmp | xargs $(WordCount) $(WordCountOptions)
# Line 496 | Line 841 | $(Executable).pure :
841          $(Print) Done statistics.
842  
843   # make pure
844 < $(Executable).pure :
845 <        $(Purify) $(PurifyOptions) $(CppCompiler) $(LinkOptions) $(LibDirs) \
846 <        $(LibList) $(ObjectFiles) -o $@
844 > #$(Executable).pure :
845 > #       $(Purify) $(PurifyOptions) $(CppCompiler) $(LinkOptions) $(LibDirs) \
846 > #       $(LibList) $(ObjectFiles) -o $@
847 > #
848 > #pure : $(Executable).pure
849  
850 < pure : $(Executable).pure
850 > #make cvslog
851 > cvslog:
852 >        $(DEV_ROOT)/scripts/cvs2cl
853  
854   # Execute
855   _runexe :

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