| 49 |
|
integrators\ |
| 50 |
|
constraints \ |
| 51 |
|
minimizers \ |
| 52 |
+ |
selection \ |
| 53 |
+ |
restraints \ |
| 54 |
+ |
lattice \ |
| 55 |
|
|
| 56 |
|
#packages containing applications |
| 57 |
|
Applications = \ |
| 58 |
|
applications/oopse \ |
| 59 |
|
applications/dump2Xyz \ |
| 60 |
+ |
applications/staticProps \ |
| 61 |
+ |
applications/dynamicProps \ |
| 62 |
|
applications/simpleBuilder\ |
| 63 |
+ |
applications/nanoRodBuilder \ |
| 64 |
|
|
| 65 |
|
Samples = \ |
| 66 |
|
samples/argon \ |
| 67 |
< |
samples/water/dimer \ |
| 67 |
> |
samples/water/dimer \ |
| 68 |
|
samples/water/spce \ |
| 69 |
|
samples/water/ssd \ |
| 70 |
|
samples/water/ssde \ |
| 71 |
+ |
samples/water/ssdrf \ |
| 72 |
+ |
samples/water/ssd-ion \ |
| 73 |
|
samples/water/tip3p_ice \ |
| 74 |
|
samples/water/tip4p \ |
| 75 |
|
samples/lipid \ |
| 76 |
|
samples/alkane \ |
| 77 |
|
samples/minimizer \ |
| 78 |
|
samples/metals \ |
| 79 |
+ |
samples/thermoIntegration/liquid \ |
| 80 |
+ |
samples/thermoIntegration/solid \ |
| 81 |
+ |
samples/dipole \ |
| 82 |
+ |
samples/shape \ |
| 83 |
|
samples/zcons \ |
| 84 |
|
|
| 85 |
|
IncludeDirs = \ |
| 86 |
< |
@SPRNG_INC_DIR@ \ |
| 87 |
< |
@MPI_INC_DIR@ |
| 86 |
> |
@CGAL_INC_DIR@ \ |
| 87 |
> |
@MPI_INC_DIR@ |
| 88 |
|
|
| 89 |
|
LibraryDirs = \ |
| 90 |
< |
@SPRNG_LIB_DIR@ \ |
| 90 |
> |
@CGAL_LIB_DIR@ \ |
| 91 |
|
@MPI_LIB_DIR@ |
| 92 |
|
|
| 93 |
|
Libraries = \ |
| 94 |
< |
@SPRNG_LIB@ \ |
| 94 |
> |
@CGAL_LIBS@ \ |
| 95 |
|
@MPI_LIB@ \ |
| 96 |
< |
@MPI_F90_LIB@ |
| 96 |
> |
@MPI_F90_LIB@ |
| 97 |
|
|
| 98 |
|
OopseHome = @OOPSE_HOME@ |
| 99 |
|
ForceParamDir = $(OopseHome)/share/forceFields |
| 135 |
|
# /home/maul/gezelter/src/code/src/UseTheForce/Darkside --> UseTheForce/Darkside |
| 136 |
|
#Package = $(shell echo $(CurrentDir) | sed -e 's/^.*\/src\/\(.*\)/\1/g') |
| 137 |
|
#use shell script to get the absolute path and then rip it off from $(CurrentDir) |
| 138 |
< |
Package = $(subst $(shell cd $(SourceDir); pwd)/,,$(CurrentDir)) |
| 138 |
> |
#Package = $(subst $(shell cd $(SourceDir); pwd)/,,$(CurrentDir)) |
| 139 |
> |
# REMINDER: We are now using the Package line in each subdir makefile. |
| 140 |
> |
# This avoids the strange path problem and the subshell |
| 141 |
|
|
| 142 |
|
PackageList = $(Package) |
| 143 |
|
PackageSourceDir = $(SourceDir)/$(Package) |
| 216 |
|
|
| 217 |
|
OtherTargetFiles = $(OtherSourceFiles:%=$(PackageTargetDir)/%) |
| 218 |
|
|
| 219 |
+ |
########################################################################### |
| 220 |
+ |
# |
| 221 |
+ |
# Figure out the names of the module files based on some work done by |
| 222 |
+ |
# configure. The tr function below is from John Graham-Cumming |
| 223 |
+ |
# (http://www.jgc.org). |
| 224 |
+ |
# |
| 225 |
+ |
# The tr function. Has three arguments: |
| 226 |
+ |
# |
| 227 |
+ |
# $1 The list of characters to translate from |
| 228 |
+ |
# $2 The list of characters to translate to |
| 229 |
+ |
# $3 The text to translate |
| 230 |
+ |
# |
| 231 |
+ |
# For example, $(call tr,A B C,1 2 3,CAPITAL) becomes 21PIT1L. |
| 232 |
+ |
|
| 233 |
+ |
tr = $(eval __t := $3) \ |
| 234 |
+ |
$(foreach c, \ |
| 235 |
+ |
$(join $(addsuffix :,$1),$2), \ |
| 236 |
+ |
$(eval __t := \ |
| 237 |
+ |
$(subst $(word 1,$(subst :, ,$c)),$(word 2,$(subst :, ,$c)), \ |
| 238 |
+ |
$(__t))))$(__t) |
| 239 |
+ |
|
| 240 |
+ |
# Common character classes for use with the tr function. Each of |
| 241 |
+ |
# these is actually a variable declaration and must be wrapped with |
| 242 |
+ |
# $() or ${} to be used. |
| 243 |
+ |
|
| 244 |
+ |
[A-Z] := A B C D E F G H I J K L M N O P Q R S T U V W X Y Z # |
| 245 |
+ |
[a-z] := a b c d e f g h i j k l m n o p q r s t u v w x y z # |
| 246 |
+ |
[0-9] := 0 1 2 3 4 5 6 7 8 9 # |
| 247 |
+ |
[A-F] := A B C D E F # |
| 248 |
+ |
|
| 249 |
+ |
# Figure out whether we have $(eval) or not (GNU Make 3.80 and above) |
| 250 |
+ |
# if we do not then we need to use the shell version of tr, and not the |
| 251 |
+ |
# faster tr function above: |
| 252 |
+ |
|
| 253 |
+ |
__have_eval := $(false) |
| 254 |
+ |
__ignore := $(eval __have_eval := $(true)) |
| 255 |
+ |
|
| 256 |
+ |
ifndef __have_eval |
| 257 |
+ |
uc = $(shell echo $1 | tr "a-z" "A-Z") |
| 258 |
+ |
lc = $(shell echo $1 | tr "A-Z" "a-z") |
| 259 |
+ |
else |
| 260 |
+ |
uc = $(call tr,$([a-z]),$([A-Z]),$1) |
| 261 |
+ |
lc = $(call tr,$([A-Z]),$([a-z]),$1) |
| 262 |
+ |
endif |
| 263 |
+ |
|
| 264 |
+ |
# OK, now we can actually use these functions to figure out the names |
| 265 |
+ |
# of the module files: |
| 266 |
+ |
|
| 267 |
+ |
ifneq "$(words $(Modules))" "0" |
| 268 |
+ |
ifeq "$(ModuleCase)" "UPPER" |
| 269 |
+ |
MODULES = $(call uc,$(Modules)) |
| 270 |
+ |
else |
| 271 |
+ |
ifeq "$(ModuleCase)" "lower" |
| 272 |
+ |
MODULES = $(call lc,$(Modules)) |
| 273 |
+ |
else |
| 274 |
+ |
MODULES = $(Modules) |
| 275 |
+ |
endif |
| 276 |
+ |
endif |
| 277 |
+ |
ModuleFiles = $(MODULES:%= $(PackageTargetDir)/%.$(ModSuffix)) |
| 278 |
+ |
ParallelModuleFiles = $(MODULES:%= $(PackageParallelTargetDir)/%.$(ModSuffix)) |
| 279 |
+ |
endif |
| 280 |
+ |
# |
| 281 |
+ |
########################################################################### |
| 282 |
+ |
|
| 283 |
|
ThirdPartyJarsTmp = $(patsubst %,$(LibDir)/%,$(JavaLibraries)) |
| 284 |
|
ThirdPartyJars = $(subst $(Space),$(X),$(ThirdPartyJarsTmp)) |
| 285 |
|
|
| 291 |
|
#if Main is defined, do not build library. It may not be true sometimes |
| 292 |
|
ifneq "$(words $(ObjectFiles) $(ParallelObjectFiles))" "0" |
| 293 |
|
DependencyFile = $(PackageSourceDir)/Makedepend |
| 294 |
< |
ifneq "$(Main)" "" |
| 294 |
> |
ifneq "$(words $(Main))" "0" |
| 295 |
|
Executable = $(BinDir)/$(Main) |
| 296 |
< |
ParallelExecutable = $(BinDir)/$(Main)_MPI |
| 296 |
> |
ifeq "$(BuiltParallelExe)" "1" |
| 297 |
> |
ParallelExecutable = $(BinDir)/$(Main)_MPI |
| 298 |
> |
endif |
| 299 |
|
else |
| 300 |
|
SharedLibrary = $(LibDir)/lib$(subst /,,$(patsubst %,oopse_%,$(Package)))_UP.so |
| 301 |
|
StaticLibrary = $(LibDir)/lib$(subst /,,$(patsubst %,oopse_%,$(Package)))_UP.a |
| 333 |
|
MakeDepend = makedepend |
| 334 |
|
INSTALL = @INSTALL@ |
| 335 |
|
InstallProgram = @INSTALL_PROGRAM@ |
| 336 |
+ |
InstallScript = @INSTALL_SCRIPT@ |
| 337 |
|
InstallData = @INSTALL_DATA@ |
| 338 |
< |
MkDir = @MKINSTALLDIRS@ |
| 338 |
> |
MkDir = @MKINSTALLDIRS@ |
| 339 |
|
Delete = rm -fr |
| 340 |
|
StaticArchiver = @AR@ |
| 341 |
|
DynamicArchiver = @CC@ |
| 366 |
|
-sourcepath $(SourceDir) |
| 367 |
|
COptions = $(FrcDeclare) @CFLAGS@ |
| 368 |
|
CParallelOptions = $(FrcDeclare) $(ParallelDeclare) @CFLAGS@ |
| 369 |
< |
CppOptions = $(FrcDeclare) @CXXFLAGS@ |
| 370 |
< |
CppParallelOptions = $(FrcDeclare) $(ParallelDeclare) @CXXFLAGS@ |
| 369 |
> |
CppOptions = $(FrcDeclare) @CXXFLAGS@ @OOPSE_TEMPLATE_FLAGS@ |
| 370 |
> |
CppParallelOptions = $(FrcDeclare) $(ParallelDeclare) @CXXFLAGS@ @OOPSE_TEMPLATE_FLAGS@ |
| 371 |
|
FortranOptions = |
| 372 |
|
F90Options = @PREPFLAG@ @F90FLAGS@ @MODDIRFLAG@$(SourceDir) @MODDIRFLAG@$(TargetDir) |
| 373 |
|
F90ParallelOptions = @PREPFLAG@ @F90FLAGS@ @MODDIRFLAG@$(SourceDir) @MODDIRFLAG@$(ParallelTargetDir) @PREPDEFFLAG@$(ParallelDeclare) |
| 445 |
|
|
| 446 |
|
# Create target directory |
| 447 |
|
$(PackageTargetDir) : |
| 448 |
< |
$(MakeDir) $@ |
| 448 |
> |
$(MkDir) $@ |
| 449 |
|
|
| 450 |
+ |
$(BinDir) : |
| 451 |
+ |
$(MkDir) $@ |
| 452 |
+ |
|
| 453 |
|
# .c -> .o |
| 454 |
|
$(PackageTargetDir)/%.o : %.c |
| 455 |
|
$(Print) $@ |
| 521 |
|
fi |
| 522 |
|
|
| 523 |
|
$(MAKE) $(MakeOptions) $(PackageParallelTargetDir)/$@ |
| 524 |
< |
if test -n "`ls *.$(ModSuffix)`"; then\ |
| 525 |
< |
$(Move) "`ls *.$(ModSuffix)`" $(PackageTargetDir);\ |
| 526 |
< |
fi |
| 524 |
> |
if test -n "`ls *.$(ModSuffix)`"; then\ |
| 525 |
> |
$(Move) "`ls *.$(ModSuffix)`" $(PackageTargetDir);\ |
| 526 |
> |
fi |
| 527 |
|
|
| 528 |
|
else |
| 529 |
|
%.o : %.F90 |
| 531 |
|
if test -n "`ls *.$(ModSuffix)`"; then\ |
| 532 |
|
$(Move) "`ls *.$(ModSuffix)`" $(PackageTargetDir);\ |
| 533 |
|
fi |
| 450 |
– |
|
| 534 |
|
endif |
| 535 |
|
|
| 536 |
|
|
| 650 |
|
$(Ranlib) $(CombinedParallelStaticLib) |
| 651 |
|
|
| 652 |
|
# Executable |
| 653 |
< |
$(Executable) : $(CombinedStaticLib) $(ObjectFiles) |
| 654 |
< |
$(Linker) $(ObjectFiles) $(LinkOptions) $(LibDirs) $(CombinedStaticLib) $(Libraries) -o $@ |
| 653 |
> |
$(Executable) : $(CombinedStaticLib) $(ObjectFiles) $(BinDir) |
| 654 |
> |
$(Linker) $(ObjectFiles) $(CombinedStaticLib) $(LinkOptions) $(LibDirs) $(Libraries) -o $@ |
| 655 |
|
|
| 656 |
< |
$(ParallelExecutable) : $(CombinedParallelStaticLib) $(ParallelObjectFiles) |
| 657 |
< |
$(Linker) $(ParallelObjectFiles) $(ParallelLinkOptions) $(LibDirs) $(CombinedParallelStaticLib) $(Libraries) -o $@ |
| 656 |
> |
$(ParallelExecutable) : $(CombinedParallelStaticLib) $(ParallelObjectFiles) $(BinDir) |
| 657 |
> |
$(Linker) $(ParallelObjectFiles) $(CombinedParallelStaticLib) $(ParallelLinkOptions) $(LibDirs) $(Libraries) -o $@ |
| 658 |
|
|
| 659 |
|
# Anything else is just copied from source to target |
| 660 |
|
$(PackageTargetDir)/% : $(PackageSourceDir)/% |
| 697 |
|
$(Executable) |
| 698 |
|
endif |
| 699 |
|
|
| 700 |
+ |
echo : $(PackageListLoop) |
| 701 |
+ |
$(Print) Done echo. |
| 702 |
|
|
| 703 |
+ |
_echoall : |
| 704 |
+ |
$(Print) $(Modules) |
| 705 |
+ |
|
| 706 |
|
# make clean |
| 707 |
|
clean : $(PackageListLoop) |
| 708 |
|
$(Print) Done clean. |
| 709 |
|
|
| 710 |
|
_cleanall : |
| 711 |
< |
$(Delete) $(ObjectFiles) $(ParallelObjectFiles) |
| 711 |
> |
$(Delete) \ |
| 712 |
> |
$(ObjectFiles) \ |
| 713 |
> |
$(ModuleFiles) \ |
| 714 |
> |
$(ParallelObjectFiles) \ |
| 715 |
> |
$(ParallelModuleFiles) \ |
| 716 |
> |
$(JarFile) \ |
| 717 |
> |
$(SharedLibrary) \ |
| 718 |
> |
$(StaticLibrary) \ |
| 719 |
> |
$(ParallelSharedLibrary) \ |
| 720 |
> |
$(ParallelStaticLibrary) \ |
| 721 |
> |
$(CombinedStaticLib) \ |
| 722 |
> |
$(CombinedParallelStaticLib) |
| 723 |
|
|
| 724 |
|
# make distclean |
| 725 |
|
distclean : $(PackageListLoop) |
| 726 |
|
$(Print) Done clean. |
| 727 |
|
|
| 728 |
< |
_distcleanall : |
| 729 |
< |
$(Delete) $(ObjectFiles) \ |
| 631 |
< |
$(ParallelObjectFiles) \ |
| 632 |
< |
$(JarFile) \ |
| 633 |
< |
$(SharedLibrary) \ |
| 634 |
< |
$(StaticLibrary) \ |
| 635 |
< |
$(ParallelSharedLibrary) \ |
| 636 |
< |
$(ParallelStaticLibrary) \ |
| 637 |
< |
$(Executable) \ |
| 728 |
> |
_distcleanall : _cleanall |
| 729 |
> |
$(Delete) $(Executable) \ |
| 730 |
|
$(ParallelExecutable) \ |
| 731 |
|
$(DependencyFile) |
| 732 |
|
|
| 641 |
– |
|
| 733 |
|
# make depend |
| 734 |
|
depend : $(PackageListLoop) |
| 735 |
|
$(Print) Done dependencies. |
| 805 |
|
_installdata : $(MyInstallDir) |
| 806 |
|
$(Print) $(InstallFiles) |
| 807 |
|
ifneq "$(words $(InstallFiles))" "0" |
| 808 |
< |
$(InstallData) $(InstallFiles) $(MyInstallDir) |
| 808 |
> |
$(InstallCommand) $(InstallFiles) $(MyInstallDir) |
| 809 |
|
endif |
| 810 |
|
|
| 811 |
|
# make statistics |
| 826 |
|
|
| 827 |
|
#make cvslog |
| 828 |
|
cvslog: |
| 829 |
< |
$(DEV_ROOT)/scripts/cvs2cl.pl |
| 829 |
> |
$(DEV_ROOT)/scripts/cvs2cl |
| 830 |
|
|
| 831 |
|
# Execute |
| 832 |
|
_runexe : |
