52 |
|
selection \ |
53 |
|
restraints \ |
54 |
|
lattice \ |
55 |
+ |
hydrodynamics \ |
56 |
|
openbabel\ |
57 |
|
antlr\ |
58 |
|
mdParser |
62 |
|
applications/dump2Xyz \ |
63 |
|
applications/staticProps \ |
64 |
|
applications/dynamicProps \ |
65 |
< |
applications/simpleBuilder\ |
65 |
> |
applications/simpleBuilder \ |
66 |
> |
applications/randomBuilder \ |
67 |
|
applications/nanoRodBuilder \ |
68 |
< |
applications/atom2mdin |
68 |
> |
applications/nanoparticleBuilder \ |
69 |
> |
applications/atom2mdin \ |
70 |
> |
applications/hydrodynamics |
71 |
|
|
72 |
+ |
|
73 |
|
Samples = \ |
74 |
+ |
samples/alkane \ |
75 |
|
samples/argon \ |
76 |
+ |
samples/cutoff \ |
77 |
+ |
samples/dipole \ |
78 |
+ |
samples/gbljtest \ |
79 |
+ |
samples/lipid \ |
80 |
+ |
samples/metals/EAM \ |
81 |
+ |
samples/metals/EAM/nanoparticle \ |
82 |
+ |
samples/metals/EAM/nanorod \ |
83 |
+ |
samples/metals/Sutton-Chen \ |
84 |
+ |
samples/minimizer \ |
85 |
+ |
samples/shape \ |
86 |
+ |
samples/thermoIntegration/liquid \ |
87 |
+ |
samples/thermoIntegration/solid \ |
88 |
|
samples/water/dimer \ |
89 |
|
samples/water/spce \ |
90 |
|
samples/water/ssd \ |
93 |
|
samples/water/ssd-ion \ |
94 |
|
samples/water/tip3p_ice \ |
95 |
|
samples/water/tip4p \ |
96 |
< |
samples/lipid \ |
79 |
< |
samples/alkane \ |
80 |
< |
samples/minimizer \ |
81 |
< |
samples/metals \ |
82 |
< |
samples/metals/EAM \ |
83 |
< |
samples/metals/EAM/nanoparticle \ |
84 |
< |
samples/metals/EAM/nanorod \ |
85 |
< |
samples/metals/Sutton-Chen \ |
86 |
< |
samples/thermoIntegration/liquid \ |
87 |
< |
samples/thermoIntegration/solid \ |
88 |
< |
samples/dipole \ |
89 |
< |
samples/shape \ |
90 |
< |
samples/zcons \ |
96 |
> |
samples/zcons |
97 |
|
|
98 |
|
IncludeDirs = \ |
99 |
|
@CGAL_INC_DIR@ \ |
121 |
|
ModuleCase = @F90_MODULE_NAMES@ |
122 |
|
ModSuffix = @MOD@ |
123 |
|
LinkOptions = \ |
124 |
< |
@FCLIBS@ |
124 |
> |
@LDFLAGS@ \ |
125 |
> |
@FCLIBS@ \ |
126 |
> |
@CXXFLAGS@ |
127 |
> |
|
128 |
|
|
129 |
|
ParallelLinkOptions = \ |
130 |
< |
@FCLIBS@ |
130 |
> |
@LDFLAGS@ \ |
131 |
> |
@FCLIBS@ \ |
132 |
> |
@CXXFLAGS@ |
133 |
|
|
134 |
|
|
135 |
|
#--------------------------------------------------------------------------- |
385 |
|
JniOptions = |
386 |
|
RmiOptions = -d $(TargetDir) -classpath $(ClassPath) \ |
387 |
|
-sourcepath $(SourceDir) |
388 |
< |
COptions = $(FrcDeclare) @CFLAGS@ |
389 |
< |
CParallelOptions = $(FrcDeclare) $(ParallelDeclare) @CFLAGS@ |
390 |
< |
CppOptions = $(FrcDeclare) @CXXFLAGS@ |
391 |
< |
CppParallelOptions = $(FrcDeclare) $(ParallelDeclare) @CXXFLAGS@ |
388 |
> |
COptions = $(FrcDeclare) @CPPFLAGS@ @CFLAGS@ |
389 |
> |
CParallelOptions = $(FrcDeclare) $(ParallelDeclare) @CPPFLAGS@ @CFLAGS@ |
390 |
> |
CppOptions = $(FrcDeclare) @CPPFLAGS@ @CXXFLAGS@ |
391 |
> |
CppParallelOptions = $(FrcDeclare) $(ParallelDeclare) @CPPFLAGS@ @CXXFLAGS@ |
392 |
|
FortranOptions = @FCFLAGS@ @MODDIRFLAG@$(SourceDir) @MODDIRFLAG@$(TargetDir) @FCFLAGS_SRCEXT@ |
393 |
< |
FortranParallelOptions = @FCFLAGS@ @MODDIRFLAG@$(SourceDir) @MODDIRFLAG@$(ParallelTargetDir) @PREPDEFFLAG@$(ParallelDeclar) @FCFLAGS_SRCEXT@ |
393 |
> |
FortranParallelOptions = @FCFLAGS@ @MODDIRFLAG@$(SourceDir) @MODDIRFLAG@$(ParallelTargetDir) @PREPDEFFLAG@$(ParallelDeclare) @FCFLAGS_SRCEXT@ |
394 |
|
JavaCompilerOptions = -d $(TargetDir) -classpath $(ClassPath) \ |
395 |
|
-sourcepath $(SourceDir) -deprecation |
396 |
|
JavaRunOptions = -classpath $(ClassPath) |
679 |
|
$(Ranlib) $(CombinedParallelStaticLib) |
680 |
|
|
681 |
|
# Executable |
682 |
< |
$(Executable) : $(CombinedStaticLib) $(ObjectFiles) $(BinDir) |
682 |
> |
$(Executable) : $(CombinedStaticLib) $(ObjectFiles) |
683 |
> |
if test ! -d $(BinDir); then \ |
684 |
> |
$(MkDir) $(BinDir) ;\ |
685 |
> |
fi |
686 |
|
$(Linker) $(ObjectFiles) $(CombinedStaticLib) $(LinkOptions) $(LibDirs) $(Libraries) -o $@ |
687 |
|
|
688 |
< |
$(ParallelExecutable) : $(CombinedParallelStaticLib) $(ParallelObjectFiles) $(BinDir) |
688 |
> |
$(ParallelExecutable) : $(CombinedParallelStaticLib) $(ParallelObjectFiles) |
689 |
> |
if test ! -d $(BinDir); then \ |
690 |
> |
$(MkDir) $(BinDir) ;\ |
691 |
> |
fi |
692 |
|
$(Linker) $(ParallelObjectFiles) $(CombinedParallelStaticLib) $(ParallelLinkOptions) $(LibDirs) $(Libraries) -o $@ |
693 |
|
|
694 |
|
# Anything else is just copied from source to target |