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Comparing trunk/OOPSE-3.0/make/Makefile.in (file contents):
Revision 2101 by chrisfen, Thu Mar 10 15:10:24 2005 UTC vs.
Revision 2753 by gezelter, Tue May 16 20:38:23 2006 UTC

# Line 51 | Line 51 | PackageLibs = \
51          minimizers \
52          selection \
53          restraints \
54 <
54 >        lattice \
55 >        hydrodynamics \
56 >        openbabel\
57 >        antlr\
58 >        mdParser
59   #packages containing applications
60   Applications = \
61          applications/oopse \
62          applications/dump2Xyz \
59        applications/simpleBuilder\
63          applications/staticProps \
64          applications/dynamicProps \
65 +        applications/simpleBuilder \
66 +        applications/randomBuilder \
67 +        applications/nanoRodBuilder \
68 +        applications/nanoparticleBuilder \
69 +        applications/atom2mdin \
70 +        applications/hydrodynamics
71  
72 +
73   Samples = \
74 +        samples/alkane \
75          samples/argon \
76 <        samples/water/dimer \
76 >        samples/cutoff \
77 >        samples/dipole \
78 >        samples/gbljtest \
79 >        samples/lipid \
80 >        samples/metals/EAM \
81 >        samples/metals/EAM/nanoparticle \
82 >        samples/metals/EAM/nanorod \
83 >        samples/metals/Sutton-Chen \
84 >        samples/minimizer \
85 >        samples/shape \
86 >        samples/thermoIntegration/liquid \
87 >        samples/thermoIntegration/solid \
88 >        samples/water/dimer \
89          samples/water/spce \
90          samples/water/ssd \
91          samples/water/ssde \
92 +        samples/water/ssdrf \
93 +        samples/water/ssd-ion \
94          samples/water/tip3p_ice \
95          samples/water/tip4p \
96 <        samples/lipid \
72 <        samples/alkane \
73 <        samples/minimizer \
74 <        samples/metals \
75 <        samples/zcons \
96 >        samples/zcons
97  
98   IncludeDirs = \
99 <        @MPI_INC_DIR@
99 >        @FFTW_INC_DIR@ \
100 >        @CGAL_INC_DIR@ \
101 >        @MPI_INC_DIR@
102  
103   LibraryDirs = \
104 +        @FFTW_LIB_DIR@ \
105 +        @CGAL_LIB_DIR@ \
106          @MPI_LIB_DIR@
107  
108   Libraries = \
109 +        @LIBS@ \
110 +        @FFTW_LIBS@ \
111 +        @CGAL_LIBS@ \
112          @MPI_LIB@ \
113 <        @MPI_F90_LIB@
113 >        @MPI_F90_LIB@
114  
115   OopseHome       = @OOPSE_HOME@
116   ForceParamDir   = $(OopseHome)/share/forceFields
# Line 96 | Line 124 | LinkOptions = \
124   ModuleCase      = @F90_MODULE_NAMES@
125   ModSuffix       = @MOD@
126   LinkOptions = \
127 <        @F90LIBS@
127 >        @LDFLAGS@ \
128 >        @FCLIBS@ \
129 >        @CXXFLAGS@
130 >        
131  
132   ParallelLinkOptions = \
133 <        @F90LIBS@
133 >        @LDFLAGS@ \
134 >        @FCLIBS@ \
135 >        @CXXFLAGS@
136  
137  
138   #---------------------------------------------------------------------------
# Line 113 | Line 146 | BinDir            = $(DEV_ROOT)/bin
146   ParallelTargetDir = $(DEV_ROOT)/MPIobj
147   LibDir            = $(DEV_ROOT)/lib
148   MakeDir           = $(DEV_ROOT)/make
149 + MainMakefile      = $(MakeDir)/Makefile
150   BinDir            = $(DEV_ROOT)/bin
151   DocsDir           = $(DEV_ROOT)/docs
152   CurrentDir        = $(CURDIR)
# Line 204 | Line 238 | OtherTargetFiles       = $(OtherSourceFiles:%=$(Packag
238                           $(LexFiles:%.l=     %.c)
239  
240   OtherTargetFiles       = $(OtherSourceFiles:%=$(PackageTargetDir)/%)
241 +
242 + ###########################################################################
243 + #
244 + # Figure out the names of the module files based on some work done by
245 + # configure.  The tr function below is from John Graham-Cumming
246 + # (http://www.jgc.org).
247 + #
248 + # The tr function.   Has three arguments:
249 + #
250 + # $1   The list of characters to translate from
251 + # $2   The list of characters to translate to
252 + # $3   The text to translate
253 + #
254 + # For example, $(call tr,A B C,1 2 3,CAPITAL) becomes 21PIT1L.
255  
256 + tr = $(eval __t := $3)                                                    \
257 +     $(foreach c,                                                         \
258 +         $(join $(addsuffix :,$1),$2),                                    \
259 +         $(eval __t :=                                                    \
260 +             $(subst $(word 1,$(subst :, ,$c)),$(word 2,$(subst :, ,$c)), \
261 +                 $(__t))))$(__t)
262 +
263 + # Common character classes for use with the tr function.  Each of
264 + # these is actually a variable declaration and must be wrapped with
265 + # $() or ${} to be used.
266 +
267 + [A-Z] := A B C D E F G H I J K L M N O P Q R S T U V W X Y Z #
268 + [a-z] := a b c d e f g h i j k l m n o p q r s t u v w x y z #
269 + [0-9] := 0 1 2 3 4 5 6 7 8 9 #
270 + [A-F] := A B C D E F #
271 +
272 + # Figure out whether we have $(eval) or not (GNU Make 3.80 and above)
273 + # if we do not then we need to use the shell version of tr, and not the
274 + # faster tr function above:
275 +
276 + __have_eval := $(false)
277 + __ignore := $(eval __have_eval := $(true))
278 +
279 + ifndef __have_eval
280 +  uc = $(shell echo $1 | tr "a-z" "A-Z")
281 +  lc = $(shell echo $1 | tr "A-Z" "a-z")
282 + else
283 +  uc = $(call tr,$([a-z]),$([A-Z]),$1)
284 +  lc = $(call tr,$([A-Z]),$([a-z]),$1)
285 + endif
286 +
287 + # OK, now we can actually use these functions to figure out the names
288 + # of the module files:
289 +
290 + ifneq "$(words $(Modules))" "0"
291 + ifeq "$(ModuleCase)" "UPPER"
292 +  MODULES = $(call uc,$(Modules))
293 + else
294 +  ifeq "$(ModuleCase)" "lower"
295 +    MODULES = $(call lc,$(Modules))
296 +  else
297 +    MODULES = $(Modules)
298 +  endif
299 + endif
300 +  ModuleFiles = $(MODULES:%= $(PackageTargetDir)/%.$(ModSuffix))
301 +  ParallelModuleFiles = $(MODULES:%= $(PackageParallelTargetDir)/%.$(ModSuffix))
302 + endif
303 + #
304 + ###########################################################################
305 +
306   ThirdPartyJarsTmp = $(patsubst %,$(LibDir)/%,$(JavaLibraries))
307   ThirdPartyJars    = $(subst $(Space),$(X),$(ThirdPartyJarsTmp))
308  
# Line 216 | Line 314 | ifneq  "$(words $(ObjectFiles) $(ParallelObjectFiles))
314   #if Main is defined, do not build library. It may not be true sometimes
315   ifneq  "$(words $(ObjectFiles) $(ParallelObjectFiles))" "0"
316    DependencyFile    = $(PackageSourceDir)/Makedepend
317 <  ifneq "$(Main)" ""
317 >  ifneq "$(words $(Main))" "0"
318      Executable             = $(BinDir)/$(Main)
319 <    ParallelExecutable     = $(BinDir)/$(Main)_MPI
319 >    ifeq "$(BuiltParallelExe)" "1"
320 >      ParallelExecutable     = $(BinDir)/$(Main)_MPI
321 >    endif
322    else
323      SharedLibrary          = $(LibDir)/lib$(subst /,,$(patsubst %,oopse_%,$(Package)))_UP.so
324      StaticLibrary          = $(LibDir)/lib$(subst /,,$(patsubst %,oopse_%,$(Package)))_UP.a
# Line 254 | Line 354 | INSTALL                = @INSTALL@
354   CppCompiler            = @CXX@
355   Linker                 = @CXX@
356   MakeDepend             = makedepend
357 + LN_S                   = @LN_S@
358   INSTALL                = @INSTALL@
359 + EGREP                  = @EGREP@
360   InstallProgram         = @INSTALL_PROGRAM@
361 + InstallScript          = @INSTALL_SCRIPT@
362   InstallData            = @INSTALL_DATA@
363   MkDir                  = @MKINSTALLDIRS@
364 < Delete                 = rm -fr
364 > Delete                 = rm -f
365   StaticArchiver         = @AR@
366   DynamicArchiver        = @CC@
367   FortranCompiler        = @FC@
265 F90Compiler            = @F90@
368   JavaCompiler           = $(JAVA_HOME)/bin/javac
369   JavaArchiver           = $(JAVA_HOME)/bin/jar
370   JarSigner              = $(JAVA_HOME)/bin/jarsigner
# Line 286 | Line 388 | COptions               = $(FrcDeclare) @CFLAGS@
388   JniOptions             =
389   RmiOptions             = -d $(TargetDir) -classpath $(ClassPath) \
390                           -sourcepath $(SourceDir)
391 < COptions               = $(FrcDeclare) @CFLAGS@
392 < CParallelOptions       = $(FrcDeclare) $(ParallelDeclare) @CFLAGS@
393 < CppOptions             = $(FrcDeclare) @CXXFLAGS@ @OOPSE_TEMPLATE_FLAGS@
394 < CppParallelOptions     = $(FrcDeclare) $(ParallelDeclare) @CXXFLAGS@ @OOPSE_TEMPLATE_FLAGS@
395 < FortranOptions         =
396 < F90Options             =  @PREPFLAG@ @F90FLAGS@ @MODDIRFLAG@$(SourceDir) @MODDIRFLAG@$(TargetDir)
295 < F90ParallelOptions     =  @PREPFLAG@ @F90FLAGS@ @MODDIRFLAG@$(SourceDir) @MODDIRFLAG@$(ParallelTargetDir)  @PREPDEFFLAG@$(ParallelDeclare)
391 > COptions               = $(FrcDeclare) @CPPFLAGS@ @CFLAGS@
392 > CParallelOptions       = $(FrcDeclare) $(ParallelDeclare) @CPPFLAGS@ @CFLAGS@
393 > CppOptions             = $(FrcDeclare) @CPPFLAGS@ @CXXFLAGS@
394 > CppParallelOptions     = $(FrcDeclare) $(ParallelDeclare) @CPPFLAGS@ @CXXFLAGS@
395 > FortranOptions         =  @FCFLAGS@ @MODDIRFLAG@$(SourceDir) @MODDIRFLAG@$(TargetDir) @FCFLAGS_SRCEXT@
396 > FortranParallelOptions =  @FCFLAGS@ @MODDIRFLAG@$(SourceDir) @MODDIRFLAG@$(ParallelTargetDir) @PREPDEFFLAG@$(ParallelDeclare) @FCFLAGS_SRCEXT@
397   JavaCompilerOptions    = -d $(TargetDir) -classpath $(ClassPath) \
398                           -sourcepath $(SourceDir) -deprecation
399   JavaRunOptions         = -classpath $(ClassPath)
# Line 337 | Line 438 | endif
438      InstallFiles             = $(Executable)
439    endif
440    InstallCommand           = $(InstallProgram)
441 +  ifneq "$(words $(LinkTargets))" "0"
442 +    MyLinkSource = $(patsubst %, $(MyInstallDir)/%,$(Main))
443 +    MyLinkTargets = $(patsubst %, $(MyInstallDir)/%,$(LinkTargets))
444 +  endif
445   endif
446  
447   ifneq "$(words $(ForcefieldFiles))" "0"
# Line 373 | Line 478 | $(PackageTargetDir)/%.o : %.c
478          $(MkDir) $@
479  
480   # .c -> .o
481 < $(PackageTargetDir)/%.o : %.c
481 > $(PackageTargetDir)/%.o : %.c $(MainMakefile)
482          $(Print) $@
483          $(CCompiler) $(COptions) -c $(IncludePath) $< -o $@
484  
485 < $(PackageParallelTargetDir)/%.o : %.c
485 > $(PackageParallelTargetDir)/%.o : %.c $(MainMakefile)
486          $(Print) $@
487          $(CCompiler) $(CParallelOptions) -c $(IncludePath) $< -o $@
488  
489   ifeq "$(UseMPI)" "yes"
490 < %.o : %.c
490 > %.o : %.c $(MainMakefile)
491          $(MAKE) $(MakeOptions) $(PackageTargetDir)/$@
492          $(MAKE) $(MakeOptions) $(PackageParallelTargetDir)/$@
493   else
494 < %.o : %.c
494 > %.o : %.c $(MainMakefile)
495          $(MAKE) $(MakeOptions) $(PackageTargetDir)/$@
496   endif
497  
498   # .cpp -> .o
499 < $(PackageTargetDir)/%.o : %.cpp
499 > $(PackageTargetDir)/%.o : %.cpp $(MainMakefile)
500          $(CppCompiler) $(CppOptions) -c $(IncludePath) $< -o $@
501  
502 < $(PackageParallelTargetDir)/%.o : %.cpp
502 > $(PackageParallelTargetDir)/%.o : %.cpp $(MainMakefile)
503          $(CppCompiler) $(CppParallelOptions) -c $(IncludePath) $< -o $@
504  
505   ifeq "$(UseMPI)" "yes"
506 < %.o : %.cpp
506 > %.o : %.cpp $(MainMakefile)
507          $(MAKE) $(MakeOptions) $(PackageTargetDir)/$@
508          $(MAKE) $(MakeOptions) $(PackageParallelTargetDir)/$@
509   else
510 < %.o : %.cpp
510 > %.o : %.cpp $(MainMakefile)
511          $(MAKE) $(MakeOptions) $(PackageTargetDir)/$@
512   endif
513  
514   # .f -> .o
515 < $(PackageTargetDir)/%.o : %.f
515 > $(PackageTargetDir)/%.o : %.f $(MainMakefile)
516          $(FortranCompiler) $(FortranOptions) -c $< -o $@
517  
518 < $(PackageParallelTargetDir)/%.o : %.f
518 > $(PackageParallelTargetDir)/%.o : %.f $(MainMakefile)
519          $(FortranCompiler) $(FortranParallelOptions) -c $< -o $@
520  
521   ifeq "$(UseMPI)" "yes"
522 < %.o : %.f
522 > %.o : %.f $(MainMakefile)
523          $(MAKE) $(MakeOptions) $(PackageTargetDir)/$@
524          $(MAKE) $(MakeOptions) $(PackageParallelTargetDir)/$@
525   else
526 < %.o : %.f
526 > %.o : %.f $(MainMakefile)
527          $(MAKE) $(MakeOptions) $(PackageTargetDir)/$@
528   endif
529  
530   # .F90 -> .o
531 < $(PackageTargetDir)/%.o : %.F90
532 <        $(F90Compiler) $(F90Options) $(IncludePath) -c $< -o $@
531 > $(PackageTargetDir)/%.o : %.F90 $(MainMakefile)
532 >        $(FortranCompiler) $(FortranOptions) $(IncludePath) -c $< -o $@
533          if test -n "`ls *.$(ModSuffix)`"; then \
534            $(Move) `ls *.$(ModSuffix)` $(PackageTargetDir);\
535          fi
536  
537 < $(PackageParallelTargetDir)/%.o : %.F90
538 <        $(F90Compiler) $(F90ParallelOptions) $(IncludePath) -c $< -o $@
537 > $(PackageParallelTargetDir)/%.o : %.F90 $(MainMakefile)
538 >        $(FortranCompiler) $(FortranParallelOptions) $(IncludePath) -c $< -o $@
539          if test -n "`ls *.$(ModSuffix)`"; then \
540            $(Move) "`ls *.$(ModSuffix)`" $(PackageParallelTargetDir);\
541          fi
542  
543   ifeq "$(UseMPI)" "yes"
544 < %.o : %.F90
544 > %.o : %.F90 $(MainMakefile)
545          $(MAKE) $(MakeOptions) $(PackageTargetDir)/$@
546          if test -n "`ls *.$(ModSuffix)`"; then\
547            $(Move) "`ls *.$(ModSuffix)`" $(PackageTargetDir);\
# Line 448 | Line 553 | else
553          fi
554  
555   else
556 < %.o : %.F90
556 > %.o : %.F90 $(MainMakefile)
557          $(MAKE) $(MakeOptions) $(PackageTargetDir)/$@
558          if test -n "`ls *.$(ModSuffix)`"; then\
559            $(Move) "`ls *.$(ModSuffix)`" $(PackageTargetDir);\
# Line 555 | Line 660 | find_objs = $(shell $(StaticArchiver) -t $(1))
660          $(Doxygen) $(DEV_ROOT)/make/Doxyfile
661  
662   #GUN make funtions to merge the libraries
663 < find_objs = $(shell $(StaticArchiver) -t $(1))
663 > find_objs = $(shell $(StaticArchiver) -t $(1) | $(EGREP) -v "SYMDEF")
664   extract_objs = $(shell $(StaticArchiver) -x $(1) $(call find_objs, $(1)))
665   create_archive = $(shell  $(StaticArchiver) $(StaticArchiverOptions) $(2) $(call find_objs, $(1)))
666   remove_objs = $(shell $(Delete) $(call find_objs, $(1)))
667   do_create = $(call extract_objs,$(1))$(call create_archive,$(1),$(2))$(call remove_objs,$(1))  
668 + do_link = $(shell $(LN_S) $(1) $(2))
669 + all_objs = $(foreach thisLib,$(LibNames), $(call find_objs, $(thisLib)))
670 + all_parallel_objs = $(foreach thisLib,$(ParallelLibNames), $(call find_objs, $(thisLib)))
671 + all_lib_objs = $(patsubst %,$(TargetDir)/%,$(call all_objs))
672 + all_lib_parallel_objs = $(patsubst %,$(ParallelTargetDir)/%,$(call all_parallel_objs))
673  
674   $(CombinedStaticLib) : $(LibDir)/.stamp_UP
675 <        $(Print) create $@      
676 <        $(foreach thisLib,$(LibNames),$(call do_create,$(thisLib),$@))
675 >        $(Print) creating $@            
676 >        $(StaticArchiver) $(StaticArchiverOptions) $@ $(call all_lib_objs)
677          $(Ranlib) $(CombinedStaticLib)
678  
679   $(CombinedParallelStaticLib) : $(LibDir)/.stamp_MPI
680 <        $(Print) create $@
681 <        $(foreach thisLib,$(ParallelLibNames), $(call do_create, $(thisLib), $@))
680 >        $(Print) creating $@
681 >        $(StaticArchiver) $(StaticArchiverOptions) $@ $(call all_lib_parallel_objs)
682          $(Ranlib) $(CombinedParallelStaticLib)
683  
684   # Executable
685 < $(Executable) : $(CombinedStaticLib) $(ObjectFiles) $(BinDir)
685 > $(Executable) : $(CombinedStaticLib) $(ObjectFiles)
686 >        if test ! -d $(BinDir); then \
687 >                $(MkDir) $(BinDir) ;\
688 >        fi
689          $(Linker) $(ObjectFiles) $(CombinedStaticLib) $(LinkOptions) $(LibDirs) $(Libraries) -o $@
690  
691 < $(ParallelExecutable) : $(CombinedParallelStaticLib) $(ParallelObjectFiles) $(BinDir)
691 > $(ParallelExecutable) : $(CombinedParallelStaticLib) $(ParallelObjectFiles)
692 >        if test ! -d $(BinDir); then \
693 >                $(MkDir) $(BinDir) ;\
694 >        fi
695          $(Linker) $(ParallelObjectFiles) $(CombinedParallelStaticLib) $(ParallelLinkOptions) $(LibDirs) $(Libraries) -o $@
696  
697   # Anything else is just copied from source to target
# Line 619 | Line 735 | endif
735          $(Executable)
736   endif
737  
738 + echo : $(PackageListLoop)
739 +        $(Print) Done echo.
740  
741 + _echoall :
742 +        $(Print) $(Modules)
743 +
744   # make clean
745   clean : $(PackageListLoop)
746          $(Print) Done clean.    
# Line 627 | Line 748 | _cleanall :
748   _cleanall :
749          $(Delete) \
750                  $(ObjectFiles) \
751 +                $(ModuleFiles) \
752                  $(ParallelObjectFiles) \
753 +                $(ParallelModuleFiles) \
754                  $(JarFile) \
755                  $(SharedLibrary) \
756                  $(StaticLibrary) \
# Line 712 | Line 835 | _installall : _buildall _installdata
835   install : $(InstallListLoop)
836          $(Print) Done Install
837  
838 < _installall : _buildall _installdata
838 > _installall : _buildall _installdata _installlinks
839  
840   $(MyInstallDir) :
841          $(MkDir) $@
# Line 720 | Line 843 | ifneq "$(words $(InstallFiles))" "0"
843   _installdata :  $(MyInstallDir)
844          $(Print) $(InstallFiles)
845   ifneq "$(words $(InstallFiles))" "0"
846 <        $(InstallData) $(InstallFiles) $(MyInstallDir)
846 >        $(InstallCommand) $(InstallFiles) $(MyInstallDir)
847   endif      
848  
849 + _installlinks :  $(MyInstallDir)
850 + ifneq "$(words $(MyLinkTargets))" "0"
851 +        @cd $(MyInstallDir)
852 +        $(foreach thisLink,$(MyLinkTargets),$(call do_link,$(MyLinkSource),$(thisLink)))
853 + endif      
854 +
855   # make statistics
856   _statisticsall :
857          @$(Print) $(patsubst %,$(CurrentDir)/%,$(SourceFiles)) >> $(DEV_ROOT)/files.tmp
# Line 733 | Line 862 | $(Executable).pure :
862          $(Print) Done statistics.
863  
864   # make pure
865 < $(Executable).pure :
866 <        $(Purify) $(PurifyOptions) $(CppCompiler) $(LinkOptions) $(LibDirs) \
867 <        $(LibList) $(ObjectFiles) -o $@
865 > #$(Executable).pure :
866 > #       $(Purify) $(PurifyOptions) $(CppCompiler) $(LinkOptions) $(LibDirs) \
867 > #       $(LibList) $(ObjectFiles) -o $@
868 > #
869 > #pure : $(Executable).pure
870  
740 pure : $(Executable).pure
741
871   #make cvslog
872   cvslog:
873 <        $(DEV_ROOT)/scripts/cvs2cl.pl
873 >        $(DEV_ROOT)/scripts/cvs2cl
874  
875   # Execute
876   _runexe :

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