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root/group/trunk/OOPSE-3.0/src/UseTheForce/ForceFields.hpp
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Comparing trunk/OOPSE-3.0/src/UseTheForce/ForceFields.hpp (file contents):
Revision 1628 by gezelter, Thu Oct 21 20:15:31 2004 UTC vs.
Revision 1656 by gezelter, Wed Oct 27 03:00:51 2004 UTC

# Line 4 | Line 4
4   #define MK_STR(s) # s
5   #define STR_DEFINE(t, s) t = MK_STR(s)
6  
7 –
7   #include <stdio.h>
8   #include <stdlib.h>
9   #include <math.h>
10 + #include <string>
11 + #include <map>
12  
13   #include "primitives/Atom.hpp"
14   #include "brains/SimInfo.hpp"
15   #include "primitives/StuntDouble.hpp"
16 + #include "types/ShapeAtomType.hpp"
17 + #include "io/basic_ifstrstream.hpp"
18  
19   #ifdef IS_MPI
20   #include "UseTheForce/mpiForceField.h"
21   #endif
22  
23 + using namespace std;
24 + using namespace oopse;
25 +
26   class bond_pair{
27   public:
28    bond_pair(){}
# Line 55 | Line 61 | class ForceFields{ (public)
61   class ForceFields{
62  
63   public:
64 <  ForceFields(){ frcFile = NULL; entry_plug = NULL; has_variant=0;}
65 <  ForceFields(char * theVariant ){ frcFile = NULL; entry_plug = NULL; has_variant=1; strcpy(variant, theVariant); }
64 >  ForceFields(){
65 >    frcFile = NULL;
66 >    entry_plug = NULL;
67 >    has_variant=0;
68 >    ffPath = getenv("FORCE_PARAM_PATH");
69 >    if( ffPath.empty() ) {
70 >      STR_DEFINE(ffPath, FRC_PATH );
71 >    }  
72 >  }
73 >  ForceFields(string theVariant){
74 >    frcFile = NULL;
75 >    entry_plug = NULL;
76 >    has_variant=1;
77 >    variant = theVariant;
78 >    ffPath = getenv("FORCE_PARAM_PATH");
79 >    if( ffPath.empty() ) {
80 >      STR_DEFINE(ffPath, FRC_PATH );
81 >    }  
82 >  }
83    virtual ~ForceFields(){}
84    
85    void setSimInfo( SimInfo* the_entry_plug ) { entry_plug = the_entry_plug; }
# Line 81 | Line 104 | class ForceFields{ (public)
104    virtual void setRcut( double LJrcut );
105    virtual void doForces( int calcPot, int calcStress );
106  
84 –  virtual double getAtomTypeMass(char* atomType) = 0;
85 –
86 –
107   protected:
108    
109    void initFortran( int useReactionField );
110    
91 –
111    FILE *frcFile;
112    SimInfo* entry_plug;
113    
114    int lineNum;
115    char readLine[500];
116    char* eof_test;
98 –  char variant[100];
117    short int has_variant;
118    double bigSigma;
119 +
120 +  string ffPath;
121 +  ifstrstream forceFile;
122 +  bool hasVariant;
123 +  string variant;
124 +  map<string, AtomType*> atomTypeMap;
125 +  // map<pair<string,string>, BondType*> bondTypeMap;
126 +  // map<tuple3<string,string,string>, BendType*> bendTypeMap;
127 +  // map<tuple4<string,string,string,string>, TorsionType*> torsionTypeMap;
128  
129   };
130  
# Line 120 | Line 147 | class DUFF : public ForceFields{ (public)
147                             torsion_set* the_torsions );
148  
149    void initForceField();
123 –  double getAtomTypeMass(char* atomType);
150  
151   private:
152    
# Line 146 | Line 172 | class LJFF : public ForceFields{ (public)
172                             torsion_set* the_torsions );
173  
174    void initForceField( );
149 –  double getAtomTypeMass(char* atomType);
175  
176 +
177   private:
178  
179    void fastForward( char* stopText, char* searchOwner );
# Line 157 | Line 183 | class EAM_FF : public ForceFields{ (public)
183   class EAM_FF : public ForceFields{
184  
185   public:
186 +
187    EAM_FF();
188 <  EAM_FF(char* the_variant);
188 >  EAM_FF(string theVariant);
189 >
190    virtual ~EAM_FF();
191    
164 –
192    void readParams();
193    void cleanMe( void );
194  
# Line 176 | Line 203 | class EAM_FF : public ForceFields{ (public)
203    void initForceField();
204  
205    void calcRcut( void );
206 <  double getAtomTypeMass(char* atomType);
206 >
207   private:
208  
209    void fastForward( char* stopText, char* searchOwner );
# Line 200 | Line 227 | class WATER : public ForceFields{ (public)
227    void initializeTorsions( int nTorsions, Torsion** torsionArray,
228                             torsion_set* the_torsions );
229    void initForceField();
203 –  double getAtomTypeMass(char* atomType);
230  
231 +
232   private:
233    
234    void fastForward( char* stopText, char* searchOwner );
# Line 212 | Line 239 | class Shapes_FF : public ForceFields{ (public)
239   class Shapes_FF : public ForceFields{
240  
241   public:
242 <  Shapes_FF();
243 <  Shapes_FF(char* the_variant);
242 >  Shapes_FF() : ForceFields() {};
243 >  Shapes_FF(char* the_variant) : ForceFields(the_variant) {};
244    virtual ~Shapes_FF();
245    
219 –
246    void readParams();
247    void cleanMe( void );
248  
# Line 230 | Line 256 | class Shapes_FF : public ForceFields{ (public)
256  
257    void initForceField();
258  
259 +  void parseShapeFile(string shapeFileName, ShapeAtomType* st);
260 +
261    void calcRcut( void );
262 <  double getAtomTypeMass(char* atomType);
262 >
263   private:
264  
265 <  void fastForward( char* stopText, char* searchOwner );
238 <  
265 >  double findLargestContactDistance(ShapeAtomType* st);
266    double shapesRcut;
267 +
268   };
269  
270  

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