fix compilation issue
adding IndexFinder which is used to select the molecules; Seperate ElectrostaticAtomTypesSectionParser into ChargeAtomTypesSectionParser and MultipoleAtomTypesSectionParser;remove print dipole option from Dump2XYZ;
adding MersenneTwister random number generator
adding basic_teebuf which can operate on multiple stream simutaneously.
Fix a bug in GofRAngle
adding LipidTransVisitor, GofXyz is working now
Updated copyright information
more bug get fixed
fix a bug in GofXyz
make processHistogram non-abstrct function
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finish GofXyz
change the output format of 2D radial distribution function
fix a bug in writing out the value of cosang
change the default bin number
change the suffix of output files;fix the problem of counting in staticProps
BlockSnapshotManager is using reference counting now
bug fix in StaticProps
(1) adding #ifdef __RWSTD to make sun compiler happy (2) fix pair density calculation problem when two selections intersect with each other
default length for staticProps is 1/2 smallest length of first frame
begin bug fix
refactory CorrelationFunction
bug fix and start of switch for type of correlation function
more fix
fixed a bug in CorrelationFunction
fixed a bug in SimInfo::getCutoff()
maximum length defaults to the cutoff radius
dynamicProps get built
dynamicProps in progress
more work in dynamicProps
adding dynamicProps
adding command line option to DynamicProps
adding command line option for DynamicProps
adding dynamicProps
more work in StaticProps
change the filenames
adding GofRAngle
remove some useless files
staticProps in progress
adding GofR
update help info
update help info for Dump2XYZ
remove SelectionVisitor
dump2Xyz now take advantage of selection library
(1) complete section parser's error message (2) add GhostTorsion (3) accumulate inertial tensor from the directional atoms before calculate rigidbody's inertial tensor
moved Package variable into subdirectory makefiles to speed up the building process
Fixed publication details in banner
formatting
minor fix
merging new_design branch into OOPSE-2.0
Added the linear visitor
remove old Vector3d.hpp from application/simpleBuilder
STL next_permutation like next_combination is working
more build fixes
cleaning up
define DEV_ROOT as relative path
change Makefile to relative path
change directory structure of application. Every executable file is replaced in seperate directory
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change the #include in source files
Import of OOPSE v. 2.0