78 |
|
root_->bs.setAll(); // |
79 |
|
|
80 |
|
for (mol = info_->beginMolecule(mi); mol != NULL; mol = info_->nextMolecule(mi)) { |
81 |
< |
TreeNode* currentMolNode; |
81 |
> |
|
82 |
|
std::string molName = mol->getMoleculeName(); |
83 |
< |
|
84 |
< |
foundIter = root_->children.find(molName); |
85 |
< |
if ( foundIter == root_->children.end()) { |
86 |
< |
currentMolNode = new TreeNode; |
87 |
< |
currentMolNode->name = molName; |
88 |
< |
currentMolNode->bs.resize(nStuntDouble_); |
89 |
< |
}else { |
90 |
< |
currentMolNode = foundIter->second; |
91 |
< |
} |
83 |
> |
TreeNode* currentMolNode = createNode(root_, molName); |
84 |
|
|
85 |
|
for(atom = mol->beginAtom(ai); atom != NULL; atom = mol->nextAtom(ai)) { |
86 |
|
std::string atomName = atom->getType(); |
87 |
< |
TreeNode* currentAtomNode; |
88 |
< |
foundIter = currentMolNode->children.find(molName); |
97 |
< |
if (foundIter == currentMolNode->children.end()) { |
98 |
< |
currentAtomNode = new TreeNode; |
99 |
< |
currentAtomNode->name = atomName; |
100 |
< |
currentAtomNode->bs.resize(nStuntDouble_); |
101 |
< |
} else { |
102 |
< |
currentAtomNode = foundIter->second; |
103 |
< |
} |
87 |
> |
TreeNode* currentAtomNode = createNode(currentMolNode, atomName); |
88 |
> |
|
89 |
|
currentMolNode->bs.setBitOn(atom->getGlobalIndex()); |
90 |
|
currentAtomNode->bs.setBitOn(atom->getGlobalIndex()); |
91 |
|
} |
92 |
|
|
93 |
|
for (rb = mol->beginRigidBody(rbIter); rb != NULL; rb = mol->nextRigidBody(rbIter)) { |
94 |
< |
std::string rbName = atom->getType(); |
95 |
< |
TreeNode* currentRbNode; |
111 |
< |
foundIter = currentMolNode->children.find(molName); |
112 |
< |
if (foundIter == currentMolNode->children.end()) { |
113 |
< |
currentRbNode = new TreeNode; |
114 |
< |
currentRbNode->name = rbName; |
115 |
< |
currentRbNode->bs.resize(nStuntDouble_); |
116 |
< |
} else { |
117 |
< |
currentRbNode = foundIter->second; |
118 |
< |
} |
94 |
> |
std::string rbName = rb->getType(); |
95 |
> |
TreeNode* currentRbNode = createNode(currentMolNode, rbName); |
96 |
|
|
97 |
|
currentMolNode->bs.setBitOn(rb->getGlobalIndex()); |
98 |
|
currentRbNode->bs.setBitOn(rb->getGlobalIndex()); |
99 |
|
|
100 |
|
//create nodes for atoms belong to this rigidbody |
101 |
< |
for(atom = rb->beginAtom(ai); rb != NULL; atom = rb->nextAtom(ai)) { |
101 |
> |
for(atom = rb->beginAtom(ai); atom != NULL; atom = rb->nextAtom(ai)) { |
102 |
|
std::string rbAtomName = atom->getType(); |
103 |
< |
TreeNode* currentRbAtomNode; |
104 |
< |
foundIter = currentRbNode->children.find(molName); |
128 |
< |
if (foundIter == currentRbNode->children.end()) { |
129 |
< |
currentRbAtomNode = new TreeNode; |
130 |
< |
currentRbAtomNode->name = rbAtomName; |
131 |
< |
currentRbAtomNode->bs.resize(nStuntDouble_); |
132 |
< |
} else { |
133 |
< |
currentRbAtomNode = foundIter->second; |
134 |
< |
} |
103 |
> |
TreeNode* currentRbAtomNode = createNode(currentRbNode, rbName);; |
104 |
> |
|
105 |
|
currentRbAtomNode->bs.setBitOn(atom->getGlobalIndex()); |
106 |
|
} |
107 |
|
|
111 |
|
|
112 |
|
} |
113 |
|
|
114 |
< |
bool NameFinder::match(const std::string& name, BitSet& bs){ |
114 |
> |
TreeNode* NameFinder::createNode(TreeNode* parent, const std::string& name) { |
115 |
> |
TreeNode* node; |
116 |
> |
std::map<std::string, TreeNode*>::iterator foundIter; |
117 |
> |
foundIter = parent->children.find(name); |
118 |
> |
if ( foundIter == parent->children.end()) { |
119 |
> |
node = new TreeNode; |
120 |
> |
node->name = name; |
121 |
> |
node->bs.resize(nStuntDouble_); |
122 |
> |
parent->children.insert(std::make_pair(name, node)); |
123 |
> |
}else { |
124 |
> |
node = foundIter->second; |
125 |
> |
} |
126 |
> |
return node; |
127 |
> |
} |
128 |
|
|
129 |
< |
bool hasError = false; |
129 |
> |
BitSet NameFinder::match(const std::string& name){ |
130 |
> |
BitSet bs(nStuntDouble_); |
131 |
> |
|
132 |
|
StringTokenizer tokenizer(name, "."); |
133 |
|
|
134 |
|
std::vector<std::string> names; |
160 |
|
matchRigidAtoms(names[0], names[1], names[2], bs); |
161 |
|
break; |
162 |
|
default: |
163 |
< |
hasError = true; |
163 |
> |
std::cerr << "invalid name: " << name << std::endl; |
164 |
|
break; |
165 |
|
} |
166 |
|
|
167 |
< |
return hasError; |
167 |
> |
return bs; |
168 |
|
} |
169 |
|
|
170 |
|
void NameFinder::matchMolecule(const std::string& molName, BitSet& bs) { |