src/selection/SelectionEvaluator.hpp

/*
 * Copyright (c) 2005 The University of Notre Dame. All Rights Reserved.
 *
 * The University of Notre Dame grants you ("Licensee") a
 * non-exclusive, royalty free, license to use, modify and
 * redistribute this software in source and binary code form, provided
 * that the following conditions are met:
 *
 * 1. Acknowledgement of the program authors must be made in any
 *    publication of scientific results based in part on use of the
 *    program.  An acceptable form of acknowledgement is citation of
 *    the article in which the program was described (Matthew
 *    A. Meineke, Charles F. Vardeman II, Teng Lin, Christopher
 *    J. Fennell and J. Daniel Gezelter, "OOPSE: An Object-Oriented
 *    Parallel Simulation Engine for Molecular Dynamics,"
 *    J. Comput. Chem. 26, pp. 252-271 (2005))
 *
 * 2. Redistributions of source code must retain the above copyright
 *    notice, this list of conditions and the following disclaimer.
 *
 * 3. Redistributions in binary form must reproduce the above copyright
 *    notice, this list of conditions and the following disclaimer in the
 *    documentation and/or other materials provided with the
 *    distribution.
 *
 * This software is provided "AS IS," without a warranty of any
 * kind. All express or implied conditions, representations and
 * warranties, including any implied warranty of merchantability,
 * fitness for a particular purpose or non-infringement, are hereby
 * excluded.  The University of Notre Dame and its licensors shall not
 * be liable for any damages suffered by licensee as a result of
 * using, modifying or distributing the software or its
 * derivatives. In no event will the University of Notre Dame or its
 * licensors be liable for any lost revenue, profit or data, or for
 * direct, indirect, special, consequential, incidental or punitive
 * damages, however caused and regardless of the theory of liability,
 * arising out of the use of or inability to use software, even if the
 * University of Notre Dame has been advised of the possibility of
 * such damages.
 */

#ifndef SELECTION_SELECTIONEVALUATOR_HPP
#define SELECTION_SELECTIONEVALUATOR_HPP

#include <map>
#include <string>
#include <vector>
#include <fstream>

#include "brains/SimInfo.hpp"
#include "selection/Token.hpp"
#include "selection/SelectionCompiler.hpp"
#include "selection/NameFinder.hpp"
#include "selection/DistanceFinder.hpp"
#include "selection/IndexFinder.hpp"
#include "utils/BitSet.hpp"
#include "primitives/StuntDouble.hpp"
#include "utils/StringUtils.hpp"
namespace oopse {


  /**
   * @class SelectionEvaluator SelectionEvaluator.hpp "selection/SelectionEvaluator"
   * @brief Evalute the tokens compiled by SelectionCompiler and return a BitSet
   */
  class SelectionEvaluator{
  public:

    SelectionEvaluator(SimInfo* info);


    bool loadScriptString(const std::string& script);
    bool loadScriptFile(const std::string& filename);
        
    BitSet evaluate();
        
    /**
     * Tests if the result from evaluation of script is dynamic.
     */         
    bool isDynamic() {
      return isDynamic_;
    }

    bool hadRuntimeError() const{
      return error;
    }

    std::string getErrorMessage() const {
      return errorMessage;
    }


    int getLinenumber() {
      return linenumbers[pc];
    }

    std::string getLine() {
      int ichBegin = lineIndices[pc];
      int ichEnd;
      if ((ichEnd = script.find('\r', ichBegin)) == std::string::npos &&
          (ichEnd = script.find('\n', ichBegin)) == std::string::npos) {
        ichEnd = script.size();
      }            
      return script.substr(ichBegin, ichEnd);
    }
  
  private:

    void clearState();
        
    bool loadScript(const std::string& filename, const std::string& script); 

    bool loadScriptFileInternal(const std::string& filename);


    void clearDefinitionsAndLoadPredefined();
         
    void define();
    void select(BitSet& bs);
    void predefine(const std::string& script);

    void instructionDispatchLoop(BitSet& bs);

    void withinInstruction(const Token& instruction, BitSet& bs);
        
    BitSet comparatorInstruction(const Token& instruction); 
    void compareProperty(StuntDouble* sd, BitSet& bs, int property, int comparator, float comparisonValue);
    BitSet nameInstruction(const std::string& name);
    BitSet indexInstruction(const boost::any& value);
    BitSet expression(const std::vector<Token>& tokens, int pc);

    BitSet lookupValue(const std::string& variable);
        
    void evalError(const std::string& message) {
      std::cerr << "SelectionEvaulator Error: " << message <<  std::endl; 
    }

    void unrecognizedCommand(const Token& token) {
      evalError("unrecognized command:" + boost::any_cast<std::string>(token.value));
    }        

    void unrecognizedExpression() {
      evalError("unrecognized expression");
    }

    void unrecognizedAtomProperty(int property){
      evalError("unrecognized atom property");
    }

    void unrecognizedIdentifier(const std::string& identifier) {
      evalError("unrecognized identifier:" + identifier);
    }    

    void invalidIndexRange(std::pair<int, int> range) {
      evalError("invalid index range: [" + toString(range.first) + ", " + toString(range.second) + ")");
    }

    void invalidIndex(int index) {
      evalError("invalid index : " + toString(index) );
    }

        
    bool containDynamicToken(const std::vector<Token>& tokens);

    double getCharge(Atom* atom);
        
    SelectionCompiler compiler;

    //const static int scriptLevelMax = 10;
    //int scriptLevel;

    //Context stack[scriptLevelMax];

    std::string filename;
    std::string script;
    std::vector<int> linenumbers;
    std::vector<int> lineIndices;
    std::vector<std::vector<Token> > aatoken;
    int pc; // program counter

    bool error;
    std::string errorMessage;

    std::vector<Token> statement;
    int statementLength;

    SimInfo* info;
    NameFinder nameFinder;
    DistanceFinder distanceFinder;
    IndexFinder indexFinder;
    int nStuntDouble;   //natoms + nrigidbodies

    typedef std::map<std::string, boost::any > VariablesType;
    VariablesType variables;

    bool isDynamic_;
    bool isLoaded_;
        
  };

}
#endif
Revision:	2204
Committed:	Fri Apr 15 22:04:00 2005 UTC (19 years, 2 months ago) by gezelter
File size:	6254 byte(s)
Log Message:	xemacs has been drafted to perform our indentation services
#	User	Rev	Content
1	tim	1961	/*
2			* Copyright (c) 2005 The University of Notre Dame. All Rights Reserved.
3			*
4			* The University of Notre Dame grants you ("Licensee") a
5			* non-exclusive, royalty free, license to use, modify and
6			* redistribute this software in source and binary code form, provided
7			* that the following conditions are met:
8			*
9			* 1. Acknowledgement of the program authors must be made in any
10			* publication of scientific results based in part on use of the
11			* program. An acceptable form of acknowledgement is citation of
12			* the article in which the program was described (Matthew
13			* A. Meineke, Charles F. Vardeman II, Teng Lin, Christopher
14			* J. Fennell and J. Daniel Gezelter, "OOPSE: An Object-Oriented
15			* Parallel Simulation Engine for Molecular Dynamics,"
16			* J. Comput. Chem. 26, pp. 252-271 (2005))
17			*
18			* 2. Redistributions of source code must retain the above copyright
19			* notice, this list of conditions and the following disclaimer.
20			*
21			* 3. Redistributions in binary form must reproduce the above copyright
22			* notice, this list of conditions and the following disclaimer in the
23			* documentation and/or other materials provided with the
24			* distribution.
25			*
26			* This software is provided "AS IS," without a warranty of any
27			* kind. All express or implied conditions, representations and
28			* warranties, including any implied warranty of merchantability,
29			* fitness for a particular purpose or non-infringement, are hereby
30			* excluded. The University of Notre Dame and its licensors shall not
31			* be liable for any damages suffered by licensee as a result of
32			* using, modifying or distributing the software or its
33			* derivatives. In no event will the University of Notre Dame or its
34			* licensors be liable for any lost revenue, profit or data, or for
35			* direct, indirect, special, consequential, incidental or punitive
36			* damages, however caused and regardless of the theory of liability,
37			* arising out of the use of or inability to use software, even if the
38			* University of Notre Dame has been advised of the possibility of
39			* such damages.
40			*/
41
42			#ifndef SELECTION_SELECTIONEVALUATOR_HPP
43			#define SELECTION_SELECTIONEVALUATOR_HPP
44
45			#include <map>
46			#include <string>
47			#include <vector>
48	chrisfen	1985	#include <fstream>
49	tim	1961
50			#include "brains/SimInfo.hpp"
51			#include "selection/Token.hpp"
52			#include "selection/SelectionCompiler.hpp"
53	tim	1967	#include "selection/NameFinder.hpp"
54	tim	1979	#include "selection/DistanceFinder.hpp"
55	tim	2097	#include "selection/IndexFinder.hpp"
56	tim	1961	#include "utils/BitSet.hpp"
57	tim	1967	#include "primitives/StuntDouble.hpp"
58	tim	1979	#include "utils/StringUtils.hpp"
59	tim	1961	namespace oopse {
60
61	tim	1967
62	gezelter	2204	/**
63			* @class SelectionEvaluator SelectionEvaluator.hpp "selection/SelectionEvaluator"
64			* @brief Evalute the tokens compiled by SelectionCompiler and return a BitSet
65			*/
66			class SelectionEvaluator{
67			public:
68	tim	1961
69	gezelter	2204	SelectionEvaluator(SimInfo* info);
70	tim	1961
71	tim	1962
72	gezelter	2204	bool loadScriptString(const std::string& script);
73			bool loadScriptFile(const std::string& filename);
74	tim	1972
75	gezelter	2204	BitSet evaluate();
76	tim	1961
77	gezelter	2204	/**
78			* Tests if the result from evaluation of script is dynamic.
79			*/
80			bool isDynamic() {
81			return isDynamic_;
82			}
83	tim	1962
84	gezelter	2204	bool hadRuntimeError() const{
85			return error;
86			}
87	tim	1962
88	gezelter	2204	std::string getErrorMessage() const {
89			return errorMessage;
90			}
91	tim	1962
92
93	gezelter	2204	int getLinenumber() {
94			return linenumbers[pc];
95			}
96	tim	1962
97	gezelter	2204	std::string getLine() {
98			int ichBegin = lineIndices[pc];
99			int ichEnd;
100			if ((ichEnd = script.find('\r', ichBegin)) == std::string::npos &&
101			(ichEnd = script.find('\n', ichBegin)) == std::string::npos) {
102			ichEnd = script.size();
103			}
104			return script.substr(ichBegin, ichEnd);
105			}
106	tim	1962
107	gezelter	2204	private:
108	tim	1961
109	gezelter	2204	void clearState();
110	tim	1962
111	gezelter	2204	bool loadScript(const std::string& filename, const std::string& script);
112	tim	1972
113	gezelter	2204	bool loadScriptFileInternal(const std::string& filename);
114	tim	1962
115	tim	1972
116	gezelter	2204	void clearDefinitionsAndLoadPredefined();
117	tim	1962
118	gezelter	2204	void define();
119			void select(BitSet& bs);
120			void predefine(const std::string& script);
121	tim	1961
122	gezelter	2204	void instructionDispatchLoop(BitSet& bs);
123	tim	1962
124	gezelter	2204	void withinInstruction(const Token& instruction, BitSet& bs);
125	tim	1967
126	gezelter	2204	BitSet comparatorInstruction(const Token& instruction);
127			void compareProperty(StuntDouble* sd, BitSet& bs, int property, int comparator, float comparisonValue);
128			BitSet nameInstruction(const std::string& name);
129			BitSet indexInstruction(const boost::any& value);
130			BitSet expression(const std::vector<Token>& tokens, int pc);
131	tim	1962
132	gezelter	2204	BitSet lookupValue(const std::string& variable);
133	tim	1967
134	gezelter	2204	void evalError(const std::string& message) {
135			std::cerr << "SelectionEvaulator Error: " << message << std::endl;
136			}
137	tim	1966
138	gezelter	2204	void unrecognizedCommand(const Token& token) {
139			evalError("unrecognized command:" + boost::any_cast<std::string>(token.value));
140			}
141	tim	1967
142	gezelter	2204	void unrecognizedExpression() {
143			evalError("unrecognized expression");
144			}
145	tim	1967
146	gezelter	2204	void unrecognizedAtomProperty(int property){
147			evalError("unrecognized atom property");
148			}
149	tim	1967
150	gezelter	2204	void unrecognizedIdentifier(const std::string& identifier) {
151			evalError("unrecognized identifier:" + identifier);
152			}
153	tim	1972
154	gezelter	2204	void invalidIndexRange(std::pair<int, int> range) {
155			evalError("invalid index range: [" + toString(range.first) + ", " + toString(range.second) + ")");
156			}
157	tim	1979
158	gezelter	2204	void invalidIndex(int index) {
159			evalError("invalid index : " + toString(index) );
160			}
161	tim	1979
162
163	gezelter	2204	bool containDynamicToken(const std::vector<Token>& tokens);
164	tim	2116
165	gezelter	2204	double getCharge(Atom* atom);
166	tim	1972
167	gezelter	2204	SelectionCompiler compiler;
168	tim	1962
169	gezelter	2204	//const static int scriptLevelMax = 10;
170			//int scriptLevel;
171	tim	1962
172	gezelter	2204	//Context stack[scriptLevelMax];
173	tim	1962
174	gezelter	2204	std::string filename;
175			std::string script;
176			std::vector<int> linenumbers;
177			std::vector<int> lineIndices;
178			std::vector<std::vector<Token> > aatoken;
179			int pc; // program counter
180	tim	1962
181	gezelter	2204	bool error;
182			std::string errorMessage;
183	tim	1962
184	gezelter	2204	std::vector<Token> statement;
185			int statementLength;
186	tim	1962
187	gezelter	2204	SimInfo* info;
188			NameFinder nameFinder;
189			DistanceFinder distanceFinder;
190			IndexFinder indexFinder;
191			int nStuntDouble; //natoms + nrigidbodies
192	tim	1972
193	gezelter	2204	typedef std::map<std::string, boost::any > VariablesType;
194			VariablesType variables;
195	tim	2034
196	gezelter	2204	bool isDynamic_;
197			bool isLoaded_;
198	tim	1972
199	gezelter	2204	};
200	tim	1961
201			}
202			#endif