OOPSE-4/make/Makefile.in

#---------------------------------------------------------------------------
#  (C) 1999 - 2002 Jacob Dreyer - Geotechnical Software Services
#  jacob.dreyer@geosoft.no - http://geosoft.no
#
#  This program is free software; you can redistribute it and/or
#  modify it under the terms of the GNU General Public License
#  as published by the Free Software Foundation; either version 2
#  of the License, or (at your option) any later version.
#
#  This program is distributed in the hope that it will be useful,
#  but WITHOUT ANY WARRANTY; without even the implied warranty of
#  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
#  GNU General Public License for more details.
#
#  You should have received a copy of the GNU General Public License
#  along with this program; if not, write to the Free Software
#  Foundation, Inc., 59 Temple Place - Suite 330, Boston, 
#  MA  02111-1307, USA.
#---------------------------------------------------------------------------
#---------------------------------------------------------------------------
#
#  GnuMake crash course:
#
#  target : depends
#    rule
#
#  target  - the parameter given to make. I.e. what to build
#  depends - file or other targets target depends on
#  rule    - how to create target (note that rule is preceeded by a TAB char)
#  $(VAR)  - environment variable or variable defined above
#  $@      - Current target
#  $*      - Current target without extension
#  $<      - Current dependency
#
#---------------------------------------------------------------------------
IS_UNIX=1

#packages containing libraries
PackageLibs = \
        utils \
        visitors \
        math \
        types \
        primitives \
        UseTheForce/DarkSide \
        UseTheForce \
        brains \
        io \
        integrators\
        constraints \
        minimizers \
        selection \
        restraints \
        lattice \
        hydrodynamics \
        antlr\
        mdParser

#packages containing applications
Applications = \
        applications/oopse \
        applications/dump2Xyz \
        applications/staticProps \
        applications/dynamicProps \
        applications/simpleBuilder \
        applications/randomBuilder \
        applications/nanoparticleBuilder \
        applications/thermalizer \
        applications/atom2md \
        applications/hydrodynamics \
        applications/utilities

Samples = \
        samples/builders \
        samples/alkane \
        samples/argon \
        samples/cutoff \
        samples/dipole \
        samples/gbljtest \
        samples/lipid \
        samples/metals/EAM \
        samples/metals/EAM/nanoparticle \
        samples/metals/EAM/nanorod \
        samples/metals/Sutton-Chen \
        samples/minimizer \
        samples/thermoIntegration/liquid \
        samples/thermoIntegration/solid \
        samples/water/dimer \
        samples/water/spce \
        samples/water/ssd \
        samples/water/ssde \
        samples/water/ssdrf \
        samples/water/ssd-ion \
        samples/water/tip3p_ice \
        samples/water/tip4p \
        samples/zcons 

IncludeDirs = \
        @MPI_INC_DIR@ \
        @FFTW_INC_DIR@ \
        @QHULL_INC_DIR@ \
        @OPENBABEL_INC_DIR@ \
        @ZLIB_INC_DIR@ 

LibraryDirs = \
        @MPI_LIB_DIR@ \
        @FFTW_LIB_DIR@ \
        @QHULL_LIB_DIR@ \
        @OPENBABEL_LIB_DIR@ \
        @ZLIB_LIB_DIR@ 

Libraries = \
        @LIBS@ \
        @MPI_LIB@ \
        @MPI_F90_LIB@ \
        @FFTW_LIBS@ \
        @QHULL@ \
        @OPENBABEL_LIB@ \
        @ZLIB@ 

OopseHome       = @OOPSE_HOME@
ForceParamDir   = $(OopseHome)/forceFields
SampleSimDir    = $(OopseHome)/samples
InstallBinDir   = $(OopseHome)/bin
DocDir          = $(OopseHome)/doc
FrcDeclare      = -DFRC_PATH="$(ForceParamDir)"
F90Declare      = -D__FORTRAN90
UseSingle       = @USE_SINGLE_PRECISION@
ifeq "$(UseSingle)" "yes"
SingleDeclare   = -DSINGLE_PRECISION
else
SingleDeclare   = 
endif
ParallelDeclare = -DIS_MPI
SinglePrecision = -DSINGLE_PRECISION
UseMPI          = @USE_MPI@
ModuleCase      = @F90_MODULE_NAMES@
ModSuffix       = @MOD@
LinkOptions = \
        @LDFLAGS@ \
        @FCLIBS@ \
        @CXXFLAGS@  \
        @CGAL_LIBS@


ParallelLinkOptions = \
        @LDFLAGS@ \
        @FCLIBS@ \
        @CXXFLAGS@ \
        @CGAL_LIBS@

#---------------------------------------------------------------------------
#
#  Directories
#
#---------------------------------------------------------------------------

SourceDir         = $(DEV_ROOT)/src
TargetDir         = $(DEV_ROOT)/obj
ParallelTargetDir = $(DEV_ROOT)/MPIobj
LibDir            = $(DEV_ROOT)/lib
MakeDir           = $(DEV_ROOT)/make
MainMakefile      = $(MakeDir)/Makefile
BinDir            = $(DEV_ROOT)/bin
DocsDir           = $(DEV_ROOT)/docs
CurrentDir        = $(CURDIR)
CombinedStaticLib = $(LibDir)/libOOPSE.a
CombinedParallelStaticLib = $(LibDir)/libOOPSE_MPI.a

ifdef Source
#get the relative path of current package to source directory
# /home/maul/gezelter/src/code/src/UseTheForce/Darkside --> UseTheForce/Darkside
#Package          = $(shell echo $(CurrentDir) | sed -e 's/^.*\/src\/\(.*\)/\1/g')
#use shell script to get the absolute path and then rip it off from $(CurrentDir)
#Package          = $(subst $(shell cd $(SourceDir); pwd)/,,$(CurrentDir))
# REMINDER: We are now using the Package line in each subdir makefile.
# This avoids the strange path problem and the subshell

PackageList              = $(Package)
PackageSourceDir         = $(SourceDir)/$(Package)
PackageTargetDir         = $(TargetDir)
PackageParallelTargetDir = $(ParallelTargetDir)
JavaMainClass            = $(subst /,.,$(Package)).$(Main)
else
PackageList              = $(PackageLibs) $(JavaPackages) $(Applications)
endif

PackageListLoop          = $(patsubst %,$(SourceDir)/%/.loop,$(PackageList))

JRE                      = $(JAVA_HOME)/jre/lib/rt.jar

ifdef IS_UNIX
X = :
else
X = \;
endif

#---------------------------------------------------------------------------
#
#  Classification of files
#
#---------------------------------------------------------------------------

# Source
JavaFiles              = $(filter %.java,  $(Source))
CppFiles               = $(filter %.cpp,   $(Source))
CFiles                 = $(filter %.c,     $(Source))
FortranFiles           = $(filter %.f,     $(Source))
F90Files               = $(filter %.F90,   $(Source))
CorbaFiles             = $(filter %.idl,   $(Source))
LexFiles               = $(filter %.l,     $(Source))
YaccFiles              = $(filter %.y,     $(Source))
OtherSourceFiles       = $(filter-out $(JavaFiles) $(CppFiles) $(CFiles) \
                                      $(FortranFiles) $(F90Files) $(LexFiles) \
                                      $(YaccFiles) $(CorbaFiles), \
                                      $(Source))
ManifestFile           = $(PackageSourceDir)/Manifest

SourceFiles            = $(JavaFiles)\
                         $(CppFiles)\
                         $(CFiles)\
                         $(FortranFiles)\
                         $(F90Files)\
                         $(LexFiles)\
                         $(YaccFiles)

# Target
JavaClassFiles         = $(JavaFiles:%.java=  $(PackageTargetDir)/%.class)
JavaClassFilesRel      = $(JavaFiles:%.java=  $(Package)/%.class)
RmiStubFiles           = $(RmiSource:%.java=  $(PackageTargetDir)/%_Stub.class)
RmiSkeletonFiles       = $(RmiSource:%.java=  $(PackageTargetDir)/%_Skel.class)
JniClassFiles          = $(JniSource:%.java=  $(PackageTargetDir)/%.class)
JniHeaders             = $(JniSource:%.java=  $(PackageSourceDir)/%.h)
ObjectFiles            = $(CFiles:%.c=        $(PackageTargetDir)/%.o)\
                         $(CppFiles:%.cpp=    $(PackageTargetDir)/%.o)\
                         $(FortranFiles:%.f=  $(PackageTargetDir)/%.o)\
                         $(F90Files:%.F90=    $(PackageTargetDir)/%.o)\
                         $(LexFiles:%.l=      $(PackageTargetDir)/%.o)\
                         $(YaccFiles:%.y=     $(PackageTargetDir)/%.o)
ParallelObjectFiles    = $(CFiles:%.c=        $(PackageParallelTargetDir)/%.o)\
                         $(CppFiles:%.cpp=    $(PackageParallelTargetDir)/%.o)\
                         $(FortranFiles:%.f=  $(PackageParallelTargetDir)/%.o)\
                         $(F90Files:%.F90=    $(PackageParallelTargetDir)/%.o)\
                         $(LexFiles:%.l=      $(PackageParallelTargetDir)/%.o)\
                         $(YaccFiles:%.y=     $(PackageParallelTargetDir)/%.o)

DerivedSource          = $(YaccFiles:%.y=    %.h) \
                         $(YaccFiles:%.y=    %.c) \
                         $(LexFiles:%.l=     %.c)

DerivedCFiles          = $(YaccFiles:%.y=    %.c) \
                         $(LexFiles:%.l=     %.c)

OtherTargetFiles       = $(OtherSourceFiles:%=$(PackageTargetDir)/%)

###########################################################################
#
# Figure out the names of the module files based on some work done by
# configure.  The tr function below is from John Graham-Cumming
# (http://www.jgc.org). 
#
# The tr function.   Has three arguments:
#
# $1   The list of characters to translate from
# $2   The list of characters to translate to
# $3   The text to translate
#
# For example, $(call tr,A B C,1 2 3,CAPITAL) becomes 21PIT1L.

tr = $(eval __t := $3)                                                    \
     $(foreach c,                                                         \
         $(join $(addsuffix :,$1),$2),                                    \
         $(eval __t :=                                                    \
             $(subst $(word 1,$(subst :, ,$c)),$(word 2,$(subst :, ,$c)), \
                 $(__t))))$(__t)

# Common character classes for use with the tr function.  Each of
# these is actually a variable declaration and must be wrapped with
# $() or ${} to be used.

[A-Z] := A B C D E F G H I J K L M N O P Q R S T U V W X Y Z #
[a-z] := a b c d e f g h i j k l m n o p q r s t u v w x y z #
[0-9] := 0 1 2 3 4 5 6 7 8 9 #
[A-F] := A B C D E F #

# Figure out whether we have $(eval) or not (GNU Make 3.80 and above)
# if we do not then we need to use the shell version of tr, and not the
# faster tr function above:

__have_eval := $(false)
__ignore := $(eval __have_eval := $(true))

ifndef __have_eval
  uc = $(shell echo $1 | tr "a-z" "A-Z")
  lc = $(shell echo $1 | tr "A-Z" "a-z")
else
  uc = $(call tr,$([a-z]),$([A-Z]),$1)
  lc = $(call tr,$([A-Z]),$([a-z]),$1)
endif

# OK, now we can actually use these functions to figure out the names
# of the module files:

ifneq "$(words $(Modules))" "0"
ifeq "$(ModuleCase)" "UPPER"
  MODULES = $(call uc,$(Modules))
else
  ifeq "$(ModuleCase)" "lower"
    MODULES = $(call lc,$(Modules))
  else
    MODULES = $(Modules)
  endif
endif
  ModuleFiles = $(MODULES:%= $(PackageTargetDir)/%.$(ModSuffix))
  ParallelModuleFiles = $(MODULES:%= $(PackageParallelTargetDir)/%.$(ModSuffix))
endif
#
###########################################################################

ThirdPartyJarsTmp = $(patsubst %,$(LibDir)/%,$(JavaLibraries))
ThirdPartyJars    = $(subst $(Space),$(X),$(ThirdPartyJarsTmp))

ifneq "$(words $(JavaFiles))" "0"
  JavaPackageName   = $(subst /,.,$(Package))
  JarFile           = $(LibDir)/$(subst /,,$(Package)).jar
endif

#if Main is defined, do not build library. It may not be true sometimes
ifneq  "$(words $(ObjectFiles) $(ParallelObjectFiles))" "0"
  DependencyFile    = $(PackageSourceDir)/Makedepend
  ifneq "$(words $(Main))" "0"
    Executable             = $(BinDir)/$(Main)
    ifeq "$(BuiltParallelExe)" "1"
      ParallelExecutable     = $(BinDir)/$(Main)_MPI
    endif
  else
    SharedLibrary          = $(LibDir)/lib$(subst /,,$(patsubst %,oopse_%,$(Package)))_UP.so
    StaticLibrary          = $(LibDir)/lib$(subst /,,$(patsubst %,oopse_%,$(Package)))_UP.a
    ParallelSharedLibrary  = $(LibDir)/lib$(subst /,,$(patsubst %,oopse_%,$(Package)))_MPI.so
    ParallelStaticLibrary  = $(LibDir)/lib$(subst /,,$(patsubst %,oopse_%,$(Package)))_MPI.a
  endif
endif

#
# Misc
#
ClassPath        = $(JRE)$(X)$(TargetDir)$(X)$(ThirdPartyJars)
JavaPackageNames = $(subst /,.,$(JavaPackages))
IncludePath      = -I$(SourceDir) $(IncludeDirs:%=-I%)
LibDirs          = -L$(LibDir)    $(LibraryDirs:%=-L%)
LocalLibs        = $(subst /,,$(patsubst %, oopse_%_UP, $(PackageLibs)))
ParallelLocalLibs= $(subst /,,$(patsubst %, oopse_%_MPI, $(PackageLibs))) 
LibList          = $(LocalLibs:%=-l%) $(Libraries)
LibNames         = $(LocalLibs:%=$(LibDir)/lib%.a)
ParallelLibList  = $(ParallelLocalLibs:%=-l%) $(Libraries)
ParallelLibNames = $(ParallelLocalLibs:%=$(LibDir)/lib%.a)


#---------------------------------------------------------------------------
#
#  Tools & Options
#
#---------------------------------------------------------------------------
Print                  = @echo
Move                   = mv -f
Copy                   = cp
CCompiler              = @CC@
CppCompiler            = @CXX@
Linker                 = @CXX@
MakeDepend             = makedepend
LN_S                   = @LN_S@
INSTALL                = @INSTALL@
EGREP                  = @EGREP@
InstallProgram         = @INSTALL_PROGRAM@
InstallScript          = @INSTALL_SCRIPT@
InstallData            = @INSTALL_DATA@
MkDir                  = @MKINSTALLDIRS@
Delete                 = rm -f
StaticArchiver         = @AR@
DynamicArchiver        = @CC@
FortranCompiler        = @FC@
JavaCompiler           = $(JAVA_HOME)/bin/javac
JavaArchiver           = $(JAVA_HOME)/bin/jar
JarSigner              = $(JAVA_HOME)/bin/jarsigner
JavadocGenerator       = $(JAVA_HOME)/bin/javadoc
JniCompiler            = $(JAVA_HOME)/bin/javah
RmiCompiler            = $(JAVA_HOME)/bin/rmic
JavaExecute            = $(JAVA_HOME)/bin/java
Purify                 = purify
WordCount              = wc
List                   = cat
Yacc                   = @YACC@
Lex                    = @LEX@
Ranlib                 = @RANLIB@
Doxygen                = @DOXYGEN@

MakeOptions            = -k
MakeDependOptions      = 
StaticArchiverOptions  = rc
DynamicArchiverOptions = -shared
JavaArchiverOptions    =
JniOptions             =
RmiOptions             = -d $(TargetDir) -classpath $(ClassPath) \
                         -sourcepath $(SourceDir)
COptions               = $(FrcDeclare) $(SingleDeclare) @CFLAGS@
CParallelOptions       = $(FrcDeclare) $(SingleDeclare) $(ParallelDeclare) @CFLAGS@
CppOptions             = $(FrcDeclare) $(SingleDeclare) @CXXFLAGS@ @CGAL_CPPFLAGS@
CppParallelOptions     = $(FrcDeclare) $(SingleDeclare) $(ParallelDeclare) @CXXFLAGS@ @CGAL_CPPFLAGS@
ifeq "$(UseSingle)" "yes"
FortranOptions         =  @FCFLAGS@ @MODDIRFLAG@$(SourceDir) @MODDIRFLAG@$(TargetDir) @PREPDEFFLAG@$(SingleDeclare) @FCFLAGS_SRCEXT@
FortranParallelOptions =  @FCFLAGS@ @MODDIRFLAG@$(SourceDir) @MODDIRFLAG@$(ParallelTargetDir) @PREPDEFFLAG@$(SingleDeclare) @PREPDEFFLAG@$(ParallelDeclare) @FCFLAGS_SRCEXT@ 
else
FortranOptions         =  @FCFLAGS@ @MODDIRFLAG@$(SourceDir) @MODDIRFLAG@$(TargetDir) @FCFLAGS_SRCEXT@
FortranParallelOptions =  @FCFLAGS@ @MODDIRFLAG@$(SourceDir) @MODDIRFLAG@$(ParallelTargetDir) @PREPDEFFLAG@$(ParallelDeclare) @FCFLAGS_SRCEXT@ 
endif
JavaCompilerOptions    = -d $(TargetDir) -classpath $(ClassPath) \
                         -sourcepath $(SourceDir) -deprecation
JavaRunOptions         = -classpath $(ClassPath) 
PurifyOptions          = 
JavadocOptions         = -d $(DocsDir) \
                         -sourcepath $(SourceDir) \
                         -classpath $(ClassPath) \
                         -author \
                         -package \
                         -use \
                         -splitIndex \
                         -version \
                         -link file:$(JAVA_HOME)/docs/api \
                         -windowtitle $(JavadocWindowTitle) \
                         -doctitle $(JavadocDocTitle) \
                         -header $(JavadocHeader) \
                         -bottom $(JavadocFooter)
WordCountOptions       = --lines

Empty                  =
Space                  = $(Empty) $(Empty)


#---------------------------------------------------------------------------
#
#  Install
#
#---------------------------------------------------------------------------

ifneq "$(words $(SampleFiles))" "0"
  MySample                 = $(subst $(shell cd $(DEV_ROOT)/samples; pwd)/,,$(CurrentDir))
  MyInstallDir             = $(SampleSimDir)/$(MySample)
  InstallFiles             = $(SampleFiles)
  InstallCommand           = $(InstallData)
endif

ifneq "$(words $(ScriptFiles))" "0"
  MyInstallDir             = $(InstallBinDir)
  InstallFiles             = $(ScriptFiles)
  InstallCommand           = $(InstallProgram)
endif

ifneq "$(words $(DocFiles))" "0"
  MyInstallDir             = $(InstallDocDir)
  InstallFiles             = $(DocFiles)
  InstallCommand           = $(InstallData)
endif

ifneq "$(words $(RootFiles))" "0"
  MyInstallDir             = $(OopseHome)
  InstallFiles             = $(RootFiles)
  InstallCommand           = $(InstallData)
endif

ifneq "$(words $(Main))" "0"
  MyInstallDir             = $(InstallBinDir)
  ifeq "$(UseMPI)" "yes"
    InstallFiles             = $(Executable) $(ParallelExecutable)
  else
    InstallFiles             = $(Executable)
  endif 
  InstallCommand           = $(InstallProgram)
  ifneq "$(words $(LinkTargets))" "0"
    MyLinkSource = $(patsubst %, $(MyInstallDir)/%,$(Main)) 
    MyLinkTargets = $(patsubst %, $(MyInstallDir)/%,$(LinkTargets))
  endif
endif

ifneq "$(words $(ForcefieldFiles))" "0"
  MyInstallDir             = $(ForceParamDir)
  InstallFiles             = $(ForcefieldFiles)
  InstallCommand           = $(InstallData)
endif

ifneq "$(words $(InstallFiles))" "0"
  InstallList            =
else
  InstallList            = $(patsubst %,$(DEV_ROOT)/%,$(Samples)) $(DEV_ROOT)/forceFields $(patsubst %, $(SourceDir)/%,$(Applications)) 
endif

InstallListLoop          = $(patsubst %,$(SourceDir)/%/.install,$(PackageList))  $(patsubst %,%/.install,$(InstallList)) 


#---------------------------------------------------------------------------
#
# Rules
#
#---------------------------------------------------------------------------
default : build

%.loop :
        @$(MAKE) $(MakeOptions) -C $(subst .loop,,$@) _$(MAKECMDGOALS)all

# Create target directory
$(PackageTargetDir) :
        $(MkDir) $@

$(BinDir) :
        $(MkDir) $@

# .c -> .o
$(PackageTargetDir)/%.o : %.c $(MainMakefile)
        $(Print) $@
        $(CCompiler) $(COptions) -c $(IncludePath) $< -o $@

$(PackageParallelTargetDir)/%.o : %.c $(MainMakefile)
        $(Print) $@
        $(CCompiler) $(CParallelOptions) -c $(IncludePath) $< -o $@

ifeq "$(UseMPI)" "yes"
%.o : %.c $(MainMakefile)
        $(MAKE) $(MakeOptions) $(PackageTargetDir)/$@
        $(MAKE) $(MakeOptions) $(PackageParallelTargetDir)/$@
else
%.o : %.c $(MainMakefile)
        $(MAKE) $(MakeOptions) $(PackageTargetDir)/$@
endif

# .cpp -> .o
$(PackageTargetDir)/%.o : %.cpp $(MainMakefile)
        $(CppCompiler) $(CppOptions) -c $(IncludePath) $< -o $@

$(PackageParallelTargetDir)/%.o : %.cpp $(MainMakefile)
        $(CppCompiler) $(CppParallelOptions) -c $(IncludePath) $< -o $@

ifeq "$(UseMPI)" "yes"
%.o : %.cpp $(MainMakefile)
        $(MAKE) $(MakeOptions) $(PackageTargetDir)/$@
        $(MAKE) $(MakeOptions) $(PackageParallelTargetDir)/$@
else
%.o : %.cpp $(MainMakefile)
        $(MAKE) $(MakeOptions) $(PackageTargetDir)/$@
endif

# .f -> .o
$(PackageTargetDir)/%.o : %.f $(MainMakefile)
        $(FortranCompiler) $(FortranOptions) -c $< -o $@

$(PackageParallelTargetDir)/%.o : %.f $(MainMakefile)
        $(FortranCompiler) $(FortranParallelOptions) -c $< -o $@

ifeq "$(UseMPI)" "yes"
%.o : %.f $(MainMakefile)
        $(MAKE) $(MakeOptions) $(PackageTargetDir)/$@
        $(MAKE) $(MakeOptions) $(PackageParallelTargetDir)/$@
else
%.o : %.f $(MainMakefile)
        $(MAKE) $(MakeOptions) $(PackageTargetDir)/$@
endif

# .F90 -> .o
$(PackageTargetDir)/%.o : %.F90 $(MainMakefile)
        $(FortranCompiler) $(FortranOptions) $(IncludePath) -c $< -o $@
        if test -n "`ls *.$(ModSuffix)`"; then \
          $(Move) `ls *.$(ModSuffix)` $(PackageTargetDir);\
        fi

$(PackageParallelTargetDir)/%.o : %.F90 $(MainMakefile)
        $(FortranCompiler) $(FortranParallelOptions) $(IncludePath) -c $< -o $@
        if test -n "`ls *.$(ModSuffix)`"; then \
          $(Move) "`ls *.$(ModSuffix)`" $(PackageParallelTargetDir);\
        fi

ifeq "$(UseMPI)" "yes"
%.o : %.F90 $(MainMakefile)
        $(MAKE) $(MakeOptions) $(PackageTargetDir)/$@
        if test -n "`ls *.$(ModSuffix)`"; then\
          $(Move) "`ls *.$(ModSuffix)`" $(PackageTargetDir);\
        fi

        $(MAKE) $(MakeOptions) $(PackageParallelTargetDir)/$@
        if test -n "`ls *.$(ModSuffix)`"; then\
          $(Move) "`ls *.$(ModSuffix)`" $(PackageTargetDir);\
        fi

else
%.o : %.F90 $(MainMakefile)
        $(MAKE) $(MakeOptions) $(PackageTargetDir)/$@
        if test -n "`ls *.$(ModSuffix)`"; then\
          $(Move) "`ls *.$(ModSuffix)`" $(PackageTargetDir);\
        fi
endif


# .java -> .class
$(PackageTargetDir)/%.class : $(PackageSourceDir)/%.java
        $(JavaCompiler) $(JavaCompilerOptions) $< 

%.class : $(PackageSourceDir)/%.java
        @$(MAKE) $(MakeOptions) $(PackageTargetDir)/$@

# .class -> .h
$(PackageSourceDir)/%.h : $(PackageTargetDir)/%.class
        $(JniCompiler) $(JniOptions) $(JavaPackageName).$*

%.h : %.class
        $(MAKE) $(MakeOptions) $(PackageSourceDir)/$@

#.y -> .h
%.h : %.y
        $(Yacc) -d  $?
        @$(Move) y.tab.h $*.h
        @$(Delete) y.tab.c

#.y -> .c
%.c : %.y
        $(Yacc) -d  $?
        @$(Move) y.tab.c $*.c
        @$(Delete) y.tab.h

# .l -> .c
%.c : %.l
        $(Print) $@
        $(Print) $(Lex) -o$@ $?
        @$(Lex) -o$@ $?

# .o -> .a

$(LibDir)/%_UP.a : $(ObjectFiles)
        $(StaticArchiver) $(StaticArchiverOptions) $@ $(ObjectFiles)
        @touch $(LibDir)/.stamp_UP

$(LibDir)/%_MPI.a: $(ParallelObjectFiles)
        $(StaticArchiver) $(StaticArchiverOptions) $@ $(ParallelObjectFiles)
        @touch $(LibDir)/.stamp_MPI

%_UP.a : $(ObjectFiles)
        $(MAKE) $(MakeOptions) $(LibDir)/$@

%_MPI.a : $(ParallelObjectFiles)
        $(MAKE) $(MakeOptions) $(LibDir)/$@

# .o -> .so
$(LibDir)/%_UP.so : $(ObjectFiles)
        $(DynamicArchiver) $(ObjectFiles) $(DynamicArchiverOptions) -o $@

$(LibDir)/%_MPI.so : $(ParallelObjectFiles)
        $(DynamicArchiver) $(ParallelObjectFiles) $(DynamicArchiverOptions) -o $@

%_UP.so : $(ObjectFiles)
        $(MAKE) $(MakeOptions) $(LibDir)/$@

%_MPI.so : $(ParallelObjectFiles)
        $(MAKE) $(MakeOptions) $(LibDir)/$@

# .class -> .jar
$(LibDir)/%.jar : $(JavaClassFiles) $(OtherTargetFiles)
        $(Print) $@
        @cd $(TargetDir); $(JavaArchiver) -cf $@ \
        $(JavaClassFilesRel) $(OtherTargetFiles)

%.jar : $(JavaClassFiles) $(OtherTargetFiles)
        $(MAKE) $(MakeOptions) $(LibDir)/$@

# .class -> JavaDoc
javadoc : 
        $(Print) $(JavaPackageNames) > $(DEV_ROOT)/packages.tmp
        $(JavadocGenerator) $(JavadocOptions) @$(DEV_ROOT)/packages.tmp
        $(Delete) $(DEV_ROOT)/packages.tmp
        $(Print) Done JavaDoc.

# .class -> _Stub.class 
$(PackageTargetDir)/%_Stub.class : $(PackageTargetDir)/%.class
        $(Print) $@
        $(RmiCompiler) $(RmiOptions) $(JavaPackageName).$*

%_Stub.class : %.class
        $(MAKE) $(MakeOptions) $(PackageTargetDir)/$@

# .class -> _Skel.class
$(PackageTargetDir)/%_Skel.class : $(PackageTargetDir)/%.class
        $(Print) $@
        $(RmiCompiler) $(RmiOptions) $(JavaPackageName).$*

%_Skel.class : %.class
        $(MAKE) $(MakeOptions) $(PackageTargetDir)/$@

document :
        $(Print) Generate Documentation for OOPSE-2.0
        @cd $(DEV_ROOT)/src     
        $(Doxygen) $(DEV_ROOT)/make/Doxyfile

#GUN make funtions to merge the libraries
find_objs = $(shell $(StaticArchiver) -t $(1) | $(EGREP) -v "SYMDEF")
extract_objs = $(shell $(StaticArchiver) -x $(1) $(call find_objs, $(1)))
create_archive = $(shell  $(StaticArchiver) $(StaticArchiverOptions) $(2) $(call find_objs, $(1)))
remove_objs = $(shell $(Delete) $(call find_objs, $(1)))
do_create = $(call extract_objs,$(1))$(call create_archive,$(1),$(2))$(call remove_objs,$(1))  
do_link = $(shell $(LN_S) $(1) $(2))
all_objs = $(foreach thisLib,$(LibNames), $(call find_objs, $(thisLib)))
all_parallel_objs = $(foreach thisLib,$(ParallelLibNames), $(call find_objs, $(thisLib)))
all_lib_objs = $(patsubst %,$(TargetDir)/%,$(call all_objs))
all_lib_parallel_objs = $(patsubst %,$(ParallelTargetDir)/%,$(call all_parallel_objs))

$(CombinedStaticLib) : $(LibDir)/.stamp_UP
        $(Print) creating $@            
        $(StaticArchiver) $(StaticArchiverOptions) $@ $(call all_lib_objs)
        $(Ranlib) $(CombinedStaticLib)

$(CombinedParallelStaticLib) : $(LibDir)/.stamp_MPI
        $(Print) creating $@
        $(StaticArchiver) $(StaticArchiverOptions) $@ $(call all_lib_parallel_objs)
        $(Ranlib) $(CombinedParallelStaticLib)

# Executable
$(Executable) : $(CombinedStaticLib) $(ObjectFiles)
        if test ! -d $(BinDir); then \
                $(MkDir) $(BinDir) ;\
        fi
        $(Linker) $(ObjectFiles) $(CombinedStaticLib) $(LinkOptions) $(LibDirs) $(Libraries) -o $@

$(ParallelExecutable) : $(CombinedParallelStaticLib) $(ParallelObjectFiles)
        if test ! -d $(BinDir); then \
                $(MkDir) $(BinDir) ;\
        fi
        $(Linker) $(ParallelObjectFiles) $(CombinedParallelStaticLib) $(ParallelLinkOptions) $(LibDirs) $(Libraries) -o $@

# Anything else is just copied from source to target
$(PackageTargetDir)/% : $(PackageSourceDir)/%
        $(Print) $@
        $(Copy) $< $@

# make (or make build)
build : $(PackageListLoop)
        $(Print) Done build.

_all : _buildall

_buildall : 
ifeq "$(UseMPI)" "yes"
_buildall : \
        $(DependencyFile) \
        $(PackageTargetDir) \
        $(ObjectFiles) \
        $(ParallelObjectFiles) \
        $(JavaClassFiles) \
        $(RmiStubFiles) \
        $(RmiSkeletonFiles) \
        $(OtherTargetFiles) \
        $(StaticLibrary) \
        $(ParallelStaticLibrary) \
        $(JarFile) \
        $(Executable) \
        $(ParallelExecutable) 
else
_buildall : \
        $(DependencyFile) \
        $(PackageTargetDir) \
        $(ObjectFiles) \
        $(JavaClassFiles) \
        $(RmiStubFiles) \
        $(RmiSkeletonFiles) \
        $(OtherTargetFiles) \
        $(StaticLibrary) \
        $(JarFile) \
        $(Executable) 
endif

echo : $(PackageListLoop)
        $(Print) Done echo.

_echoall :
        $(Print) $(Modules)

# make clean
clean : $(PackageListLoop)
        $(Print) Done clean.    

_cleanall :
        $(Delete) \
                $(ObjectFiles) \
                $(ModuleFiles) \
                $(ParallelObjectFiles) \
                $(ParallelModuleFiles) \
                $(JarFile) \
                $(SharedLibrary) \
                $(StaticLibrary) \
                $(ParallelSharedLibrary) \
                $(ParallelStaticLibrary) \
                $(CombinedStaticLib) \
                $(CombinedParallelStaticLib)

# make distclean
distclean : $(PackageListLoop)
        $(Print) Done clean.    

_distcleanall : _cleanall
        $(Delete) $(Executable) \
                  $(ParallelExecutable) \
                  $(DependencyFile) 

# make depend
depend : $(PackageListLoop)
        $(Print) Done dependencies.

_dependall : $(DependencyFile)

$(DependencyFile) : $(DerivedSource)
        $(Print) $@ 
        @cd $(PackageSourceDir)

ifneq "$(words $(CppFiles))" "0"
        $(DEV_ROOT)/scripts/filepp  -I $(DEV_ROOT)/src -od '$$(TargetDir)/' -MM $(CppFiles)>> Make.cpptemp
        @cat Make.cpptemp  >> $(DependencyFile)
        $(Delete) Make.cpptemp

  ifeq "$(UseMPI)" "yes"
        $(DEV_ROOT)/scripts/filepp  -I $(DEV_ROOT)/src -od '$$(ParallelTargetDir)/' $(ParallelDeclare) -MM $(CppFiles)>> Make.cpptemp
        @cat Make.cpptemp  >> $(DependencyFile)
        @$(Delete) Make.cpptemp
  endif

endif

ifneq "$(words $(CFiles))" "0" 
        $(DEV_ROOT)/scripts/filepp  -I $(DEV_ROOT)/src -od '$$(TargetDir)/'  -MM $(CFiles) $(DerivedCFiles)  >> Make.ctemp
        @cat Make.ctemp  >> $(DependencyFile)
        $(Delete) Make.ctemp

  ifeq "$(UseMPI)" "yes"
        $(DEV_ROOT)/scripts/filepp  -I $(DEV_ROOT)/src -od '$$(ParallelTargetDir)/' $(ParallelDeclare) -MM $(CFiles) $(DerivedCFiles)  >> Make.ctemp
        @cat Make.ctemp  >> $(DependencyFile)
        @$(Delete) Make.ctemp
  endif

endif

ifneq "$(words $(F90Files))" "0"
        $(DEV_ROOT)/scripts/filepp  -I $(DEV_ROOT)/src -od '$$(TargetDir)/' $(F90Declare) -MM -mc $(ModuleCase) -ms $(ModSuffix) $(F90Files) > Make.ftemp
        @cat Make.ftemp >> $(DependencyFile)
        @$(Delete) Make.ftemp

  ifeq "$(UseMPI)" "yes"
        $(DEV_ROOT)/scripts/filepp  -I $(DEV_ROOT)/src -od '$$(ParallelTargetDir)/' $(ParallelDeclare) $(F90Declare) -MM -mc $(ModuleCase) -ms $(ModSuffix)  $(F90Files) >> Make.ftemp
        @cat Make.ftemp >> $(DependencyFile)
        @$(Delete) Make.ftemp
  endif

endif

# make lib
lib    : $(PackageListLoop)
        $(Print) Libraries built.

_liball : $(JarFile) $(SharedLibrary) $(StaticLibrary)

jar : $(JarFile)

jarsign : $(JarFile)
        $(JarSigner) -keystore GeoSoftKeystore $(JarFile) myself

#make install
%.install :
        @$(MAKE) $(MakeOptions) -C $(subst .install,,$@) _installall    

install : $(InstallListLoop)
        $(Print) Done Install

_installall : _buildall _installdata _installlinks

$(MyInstallDir) : 
        $(MkDir) $@

_installdata :  $(MyInstallDir)
        $(Print) $(InstallFiles) 
ifneq "$(words $(InstallFiles))" "0"
        $(InstallCommand) $(InstallFiles) $(MyInstallDir)
endif       

_installlinks :  $(MyInstallDir)
ifneq "$(words $(MyLinkTargets))" "0"
        @cd $(MyInstallDir)
        $(foreach thisLink,$(MyLinkTargets),$(call do_link,$(MyLinkSource),$(thisLink)))
endif       

# make statistics
_statisticsall :
        @$(Print) $(patsubst %,$(CurrentDir)/%,$(SourceFiles)) >> $(DEV_ROOT)/files.tmp

statistics : $(PackageListLoop)
        @$(List) $(DEV_ROOT)/files.tmp | xargs $(WordCount) $(WordCountOptions)
        @$(Delete) $(DEV_ROOT)/files.tmp
        $(Print) Done statistics.

# make pure
#$(Executable).pure :
#       $(Purify) $(PurifyOptions) $(CppCompiler) $(LinkOptions) $(LibDirs) \
#       $(LibList) $(ObjectFiles) -o $@
#
#pure : $(Executable).pure

#make cvslog
cvslog:
        $(DEV_ROOT)/scripts/cvs2cl

# Execute
_runexe :
        $(Executable) $(RunParameters)

_runjava :
        $(JavaExecute) $(JavaRunOptions) $(JavaMainClass) $(RunParameters)

run : _runjava


ifdef $(DependencyFile)
-include $(DependencyFile)
endif
Revision:	3319
Committed:	Wed Jan 23 03:45:33 2008 UTC (16 years, 7 months ago) by gezelter
File size:	28475 byte(s)
Log Message:	Removed older version of openbabel from our code. We now have a configure check to see if openbabel is installed and then we link to the stuff we need. Conversion to OOPSE's md format is handled by only one application (atom2md), so most of the work went on there. ElementsTable still needs some work to function in parallel.