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root/group/trunk/OOPSE-4/samples/dipole/split_SSD.md
Revision: 2990
Committed: Thu Aug 31 20:12:12 2006 UTC (17 years, 10 months ago) by chrisfen
File size: 1287 byte(s)
Log Message:
converted samples over to the OOPSE-4 file format

Fixed an MPI bug in thermodynamic integration

File Contents

# User Rev Content
1 chrisfen 2990 <OOPSE version=4>
2     <MetaData>
3 tim 2106 #include "splitDipole.md"
4     #include "water.md"
5    
6 tim 2489
7 tim 2106 component{
8     type = "HEAD";
9     nMol = 1;
10     }
11    
12     component{
13     type = "SSD";
14     nMol = 1;
15     }
16    
17    
18    
19     ensemble = NVT;
20     forceField = "DUFF";
21     forceFieldFileName = "Lipid.frc";
22 chrisfen 2311 electrostaticSummationMethod = "none";
23 tim 2106 dielectric = 80.0;
24     cutoffRadius = 9.0;
25     switchingRadius = 7.8;
26    
27    
28 tim 2489
29 gezelter 2112 targetTemp = 100.0;
30 tim 2106 targetPressure = 1.0;
31    
32 gezelter 2112 tauThermostat = 1e3;
33 tim 2106 tauBarostat = 1e4;
34    
35     dt = 1.0;
36     runTime = 1e5;
37    
38     sampleTime = 1e2;
39     statusTime = 10;
40     useInitialTime = "false";
41     useInitialExtendedSystemState = "false";
42 chrisfen 2990 </MetaData>
43     <Snapshot>
44     <FrameData>
45     Time: 100000
46     Hmat: {{ 59.7166, 0, 0 }, { 0, 59.7166, 0 }, { 0, 0, 59.7166 }}
47     Thermostat: 0.143595 , 14398.3
48     Barostat: {{ 0, 0, 0 }, { 0, 0, 0 }, { 0, 0, 0 }}
49     </FrameData>
50     <StuntDoubles>
51     0 pvqj 1.190942 0.027501 -0.023832 -0.000000e+00 0.000000e+00 -0.000000e+00 7.267000e-03 1.466900e-02 -1.820000e-04 9.998660e-01 -0.000000e+00 0.000000e+00 0.000000e+00
52     1 pvqj 4.295467 -0.008031 0.435229 0.000000e+00 -0.000000e+00 0.000000e+00 3.628000e-03 9.898270e-01 1.401060e-01 2.447900e-02 -0.000000e+00 0.000000e+00 -0.000000e+00
53     </StuntDoubles>
54     </Snapshot>
55     </OOPSE>