| 1 |
molecule{ |
| 2 |
name = "SSD_E"; |
| 3 |
|
| 4 |
atom[0]{ |
| 5 |
type = "SSD_E"; |
| 6 |
position( 0.0, 0.0, 0.0 ); |
| 7 |
orientation( 0.0, 0.0, 0.0 ); |
| 8 |
} |
| 9 |
} |
| 10 |
|
| 11 |
molecule{ |
| 12 |
name = "SSD_RF"; |
| 13 |
|
| 14 |
atom[0]{ |
| 15 |
type = "SSD_RF"; |
| 16 |
position( 0.0, 0.0, 0.0 ); |
| 17 |
orientation( 0.0, 0.0, 0.0 ); |
| 18 |
} |
| 19 |
} |
| 20 |
|
| 21 |
molecule{ |
| 22 |
name = "SSD"; |
| 23 |
|
| 24 |
atom[0]{ |
| 25 |
type = "SSD"; |
| 26 |
position( 0.0, 0.0, 0.0 ); |
| 27 |
orientation( 0.0, 0.0, 0.0 ); |
| 28 |
} |
| 29 |
} |
| 30 |
|
| 31 |
molecule{ |
| 32 |
name = "SSD1"; |
| 33 |
|
| 34 |
atom[0]{ |
| 35 |
type = "SSD1"; |
| 36 |
position( 0.0, 0.0, 0.0 ); |
| 37 |
orientation( 0.0, 0.0, 0.0 ); |
| 38 |
} |
| 39 |
} |
| 40 |
|
| 41 |
molecule{ |
| 42 |
name = "TIP3P"; |
| 43 |
|
| 44 |
atom[0]{ |
| 45 |
type = "O_TIP3P"; |
| 46 |
position( 0.0, 0.0, -0.06556 ); |
| 47 |
} |
| 48 |
atom[1]{ |
| 49 |
type = "H_TIP3P"; |
| 50 |
position( 0.0, 0.75695, 0.52032 ); |
| 51 |
} |
| 52 |
atom[2]{ |
| 53 |
type = "H_TIP3P"; |
| 54 |
position( 0.0, -0.75695, 0.52032 ); |
| 55 |
} |
| 56 |
|
| 57 |
|
| 58 |
rigidBody[0]{ |
| 59 |
|
| 60 |
members(0, 1, 2); |
| 61 |
} |
| 62 |
|
| 63 |
|
| 64 |
cutoffGroup{ |
| 65 |
|
| 66 |
members(0, 1, 2); |
| 67 |
} |
| 68 |
|
| 69 |
} |
| 70 |
|
| 71 |
molecule{ |
| 72 |
name = "TIP4P"; |
| 73 |
|
| 74 |
atom[0]{ |
| 75 |
type = "O_TIP4P"; |
| 76 |
position( 0.0, 0.0, -0.06556 ); |
| 77 |
} |
| 78 |
atom[1]{ |
| 79 |
type = "H_TIP4P"; |
| 80 |
position( 0.0, 0.75695, 0.52032 ); |
| 81 |
} |
| 82 |
atom[2]{ |
| 83 |
type = "H_TIP4P"; |
| 84 |
position( 0.0, -0.75695, 0.52032 ); |
| 85 |
} |
| 86 |
atom[3]{ |
| 87 |
type = "EP_TIP4P"; |
| 88 |
position( 0.0, 0.0, 0.08444 ); |
| 89 |
} |
| 90 |
|
| 91 |
rigidBody[0]{ |
| 92 |
|
| 93 |
members(0, 1, 2, 3); |
| 94 |
} |
| 95 |
|
| 96 |
|
| 97 |
cutoffGroup{ |
| 98 |
|
| 99 |
members(0, 1, 2, 3); |
| 100 |
} |
| 101 |
|
| 102 |
} |
| 103 |
|
| 104 |
molecule{ |
| 105 |
name = "TIP5P"; |
| 106 |
|
| 107 |
atom[0]{ |
| 108 |
type = "O_TIP5P"; |
| 109 |
position( 0.0, 0.0, -0.06556 ); |
| 110 |
} |
| 111 |
atom[1]{ |
| 112 |
type = "H_TIP5P"; |
| 113 |
position( 0.0, 0.75695, 0.52032 ); |
| 114 |
} |
| 115 |
atom[2]{ |
| 116 |
type = "H_TIP5P"; |
| 117 |
position( 0.0, -0.75695, 0.52032 ); |
| 118 |
} |
| 119 |
atom[3]{ |
| 120 |
type = "EP_TIP5P"; |
| 121 |
position( 0.57154, 0.0, -0.46971 ); |
| 122 |
} |
| 123 |
atom[4]{ |
| 124 |
type = "EP_TIP5P"; |
| 125 |
position( -0.57154, 0.0, -0.46971 ); |
| 126 |
} |
| 127 |
|
| 128 |
rigidBody[0]{ |
| 129 |
|
| 130 |
members(0, 1, 2, 3, 4); |
| 131 |
} |
| 132 |
|
| 133 |
|
| 134 |
cutoffGroup{ |
| 135 |
|
| 136 |
members(0, 1, 2, 3, 4); |
| 137 |
} |
| 138 |
|
| 139 |
} |
| 140 |
|
| 141 |
molecule{ |
| 142 |
name = "SPCE"; |
| 143 |
|
| 144 |
atom[0]{ |
| 145 |
type = "O_SPCE"; |
| 146 |
position( 0.0, 0.0, -0.06461 ); |
| 147 |
} |
| 148 |
atom[1]{ |
| 149 |
type = "H_SPCE"; |
| 150 |
position( 0.0, 0.81649, 0.51275 ); |
| 151 |
} |
| 152 |
atom[2]{ |
| 153 |
type = "H_SPCE"; |
| 154 |
position( 0.0, -0.81649, 0.51275 ); |
| 155 |
} |
| 156 |
|
| 157 |
rigidBody[0]{ |
| 158 |
|
| 159 |
members(0, 1, 2); |
| 160 |
} |
| 161 |
|
| 162 |
|
| 163 |
cutoffGroup{ |
| 164 |
|
| 165 |
members(0, 1, 2); |
| 166 |
} |
| 167 |
|
| 168 |
} |
| 169 |
|
| 170 |
molecule{ |
| 171 |
name = "DPD"; |
| 172 |
|
| 173 |
atom[0]{ |
| 174 |
type = "DPD"; |
| 175 |
position(0.0, 0.0, 0.0); |
| 176 |
} |
| 177 |
} |
| 178 |
|
| 179 |
molecule{ |
| 180 |
name = "OFAKE"; |
| 181 |
|
| 182 |
atom[0]{ |
| 183 |
type = "O_TIP3P"; |
| 184 |
position( 0.0, 0.0, -0.06556 ); |
| 185 |
} |
| 186 |
} |
| 187 |
|
| 188 |
molecule{ |
| 189 |
name = "HFAKE"; |
| 190 |
|
| 191 |
atom[0]{ |
| 192 |
type = "H_FAKE"; |
| 193 |
position( 0.0, 0.0, -0.06556 ); |
| 194 |
} |
| 195 |
} |
| 196 |
|
| 197 |
|
