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root/group/trunk/OOPSE-4/samples/water/dimer/two.md
Revision: 2990
Committed: Thu Aug 31 20:12:12 2006 UTC (17 years, 10 months ago) by chrisfen
File size: 1131 byte(s)
Log Message:
converted samples over to the OOPSE-4 file format

Fixed an MPI bug in thermodynamic integration

File Contents

# User Rev Content
1 chrisfen 2990 <OOPSE version=4>
2     <MetaData>
3 gezelter 1490 #include "water.md"
4    
5 tim 2489
6 gezelter 1490 component{
7     type = "TIP4P";
8     nMol = 2;
9     }
10    
11    
12    
13     ensemble = NVT;
14 chrisfen 2326 forceField = "DUFF";
15 chrisfen 2338 electrostaticSummationMethod = "none";
16 gezelter 1490 dielectric = 80.0;
17     cutoffRadius = 9.0;
18 chrisfen 2342 switchingRadius = 7.7;
19 gezelter 1490
20    
21 tim 2489
22 gezelter 1490 targetTemp = 0.001;
23     targetPressure = 1.0;
24    
25     tauThermostat = 1e4;
26     tauBarostat = 1e4;
27    
28     dt = 1.0;
29 chrisfen 2342 runTime = 1e4;
30 gezelter 1490
31 gezelter 2084 sampleTime = 1e2;
32 chrisfen 2342 statusTime = 1;
33 gezelter 1490 useInitialTime = "false";
34     useInitialExtendedSystemState = "false";
35 chrisfen 2990 </MetaData>
36     <Snapshot>
37     <FrameData>
38     Time: 99991
39     Hmat: {{ 59.7166, 0, 0 }, { 0, 59.7166, 0 }, { 0, 0, 59.7166 }}
40     Thermostat: -0.00400019 , 11.42
41     </FrameData>
42     <StuntDoubles>
43     0 pvqj 1.139005 0.02947 0.017771 8.100000e-05 -2.510000e-04 2.200000e-05 6.728890e-01 -5.173170e-01 -5.134360e-01 1.264420e-01 1.472000e-03 3.632000e-03 -9.030000e-04
44     1 pvqj 3.860995 -0.02947 -0.017771 -8.100000e-05 2.510000e-04 -2.200000e-05 7.059430e-01 1.780690e-01 -5.268640e-01 4.385770e-01 -1.064400e-02 2.690000e-03 1.290000e-04
45     </StuntDoubles>
46     </Snapshot>
47     </OOPSE>