merging new_design branch into OOPSE-2.0
fixed useXXX in the entry_plug so that it only is set if the atoms really are in the simulation
fixed duplicate declaration foo
char* -> string
forcefield refactoring for shapes
fixey fixey the breakey breakey
fixey fixey
Breaky Breaky. Fixey Fixey.
fixed a fortran name problem
Fortran/C++ interface de-obfuscation project (It is a very long story)
change the #include in source files
Import of OOPSE v. 2.0
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