removed some testing code...
still fixing up wolf...
In process of adding sutton-chen forcefield.
reaction field looks to be working now - for charges and dipoles alike
added charge-dipole reaction field - don't know if it works...
streamlined reaction field for dipoles (now a good bit faster) and added reaction field for charges - still need to do charge-dipole RF
Still had some globals toUpper problems - these changes should fix those...
fixed an MPI compilation bug in GayBerne
fix an index mismathcing between c and fortran
fixed gb/lj and gb/gb torques and a rotation matrix bug
merged reaction field with electrostatics.F90
using notation from Cleaver paper
bugtracking gb
changing GB architecture
Add parts for the GayBerne LJ
simplifying long range potential array
More Change goodness for calculation of potential.
Breaky Breaky: Add Support for seperating potential contributions.
maybe some work on wolf
working on wolf
Added define for ifc 7 so derfc is external. Other compilers should treat erfc as intrinsic.
Changed erfc to derfc and declared it to be external to fix issure with ifc7. Hopefully this will not cause a problem with other compilers where derfc is an intrinsic function.
MPI fix for SimHasAtype in simulation module. We needed a seperate receive buffer.
slowdown fixed - now roughly the same speed as the old version when using dipoles energies are now exactly the same between the old version of OOPSE and this version
Bug fix: If we are not using LJ (say we are using EAM), we probably shouldn't rebuild the LJ mixing map.
Fixed a defaultCutoff bug (HEMES!)
Fixed bugs in reaction field, now it appears as though it really is working...
reaction field seems to work now, still need to do some testing...
fixing some summation method issues
moved a header file around
it builds now, but there are known issues - particularly with reaction field...
some fixes but even more breaking (cutting out the old way to do reaction field)
Working on adding WOLF
added in the undamped wolf, in the process of doing the damped wolf
EAM now uses eamlist to lookup eamAtypes instead of assuming a 1-1 correspondence to atypes.
fixed a bug in the createMixingMap routine. It should now set doShift correctly
Added access to mpi logical variables
made some changes for implementing the wolf potential
updated getEAMCut
added some probably nonfunctional get*cut routines
Added eamType map to atid map.
added fCutoffPolicy.h
Complete rewrite of Lennard Jones module
replace c++ style comment in c files
Added subroutine to set cuttoff for Interaction map and function in simulation.F90 to determine if a particular atype is present in a simulation.
Breaky breaky!
Removed balance from the Darkside (files)
fix bug in NPAT and NPrT
just some tap changes
Modifications to temper the dipolar strength in the first solvation shell for tap
Modifications to tap. Also correcting changes to the previous merge that were not caught
added gb
Couple of changes for TAP water. Need to parametrize.
OOPSE setup for TAP water. It's not parametrized, but OOPSE will now let me run it...
Got rid of write statements and am closer to a working shapes
Shapes is limping along with a array bounds overwrite (I think...). At least the parser loads the forcefield fine...
xemacs has been drafted to perform our indentation services
Changed interface name for SGI Compiler
Added destroy methods for Fortran modules.
Added destroy method to clean up memory
cleaned up memory leak fix
Updates to deallocate object in fortran.
Changes to delete atypes...
fixing of the quadrupoles. look! it's divide by 3 like stone says!
added some stuff to clean out module files during "make clean"
quadrupole interactions should be working with a remaining question of interaction magnitude
Altered signs to fix charge-dipole interactions
Make sure electrostatic_module provides data for reaction_field
constant back to correct value
fixed three typos
first run at charge-quadrupole interactions
added some samples
settled on a unit for quadrupoles
added fortran-side support for split dipoles
new electrostatic module
electrostatic unification project fixed an uninitialized variable in Lennard Jones mixing map
adding soft potential to LJ Module
reactionfield get fixed
moved Package variable into subdirectory makefiles to speed up the building process
added dummy subroutine to avoid empty unit, synchronized this dummy routine between C and fortran
separating modules and C/Fortran interface subroutines
merging new_design branch into OOPSE-2.0
Fixed a mixing list bug that slowed down the force loop
current status of the debugging process
Breaky Breaky
Shapes looks like it's working
still debugging
forcefield refactoring for shapes
Changes to help advance shapes
Dear god! It runs and conserves energy!
Added un-busticated fortran files and c/Fortran interfaces
Breaky Breaky. Fixey Fixey.
Added newLJtype to lj module.
Added interface for fortran lj module.
fixed a fortran name problem
Fortran/C++ interface de-obfuscation project appears to be complete! Woo hoo!
Fortran/C++ interface de-obfuscation project (It is a very long story)
fixing some broken fortran stuff
name sanity on the fortran side
Added correct prototypes for C-fortran interface functions.
Added new files for fortran interface.
working on shapes for portability
move mpiSimulation_module to DarkSide
Started work merging shapes
define DEV_ROOT as relative path
change Makefile to relative path
move fortran files around to solve dependency problem
change the #include in source files
Import of OOPSE v. 2.0