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root/group/trunk/OOPSE-4/src/UseTheForce/SHAPES_FF.hpp
Revision: 2209
Committed: Mon Apr 18 03:50:23 2005 UTC (19 years, 2 months ago) by chrisfen
File size: 3021 byte(s)
Log Message:
Working on the shapes parser...

File Contents

# User Rev Content
1 chrisfen 2209 /*
2     * Copyright (c) 2005 The University of Notre Dame. All Rights Reserved.
3     *
4     * The University of Notre Dame grants you ("Licensee") a
5     * non-exclusive, royalty free, license to use, modify and
6     * redistribute this software in source and binary code form, provided
7     * that the following conditions are met:
8     *
9     * 1. Acknowledgement of the program authors must be made in any
10     * publication of scientific results based in part on use of the
11     * program. An acceptable form of acknowledgement is citation of
12     * the article in which the program was described (Matthew
13     * A. Meineke, Charles F. Vardeman II, Teng Lin, Christopher
14     * J. Fennell and J. Daniel Gezelter, "OOPSE: An Object-Oriented
15     * Parallel Simulation Engine for Molecular Dynamics,"
16     * J. Comput. Chem. 26, pp. 252-271 (2005))
17     *
18     * 2. Redistributions of source code must retain the above copyright
19     * notice, this list of conditions and the following disclaimer.
20     *
21     * 3. Redistributions in binary form must reproduce the above copyright
22     * notice, this list of conditions and the following disclaimer in the
23     * documentation and/or other materials provided with the
24     * distribution.
25     *
26     * This software is provided "AS IS," without a warranty of any
27     * kind. All express or implied conditions, representations and
28     * warranties, including any implied warranty of merchantability,
29     * fitness for a particular purpose or non-infringement, are hereby
30     * excluded. The University of Notre Dame and its licensors shall not
31     * be liable for any damages suffered by licensee as a result of
32     * using, modifying or distributing the software or its
33     * derivatives. In no event will the University of Notre Dame or its
34     * licensors be liable for any lost revenue, profit or data, or for
35     * direct, indirect, special, consequential, incidental or punitive
36     * damages, however caused and regardless of the theory of liability,
37     * arising out of the use of or inability to use software, even if the
38     * University of Notre Dame has been advised of the possibility of
39     * such damages.
40     */
41    
42     /**
43     * @file SHAPES_FF.hpp
44     * @author chrisfen
45     * @date 4/14/2005
46     * @time 9:11am
47     * @version 1.0
48     */
49    
50     #ifndef USETHEFORCE_SHAPES_FF_HPP
51     #define USETHEFORCE_SHAPES_FF_HPP
52    
53     #include "UseTheForce/ForceField.hpp"
54     #include "io/SectionParserManager.hpp"
55     #include "UseTheForce/ForceFieldCreator.hpp"
56     #include "types/ShapeAtomType.hpp"
57    
58     namespace oopse {
59    
60     /**
61     * @class SHAPES_FF SHAPES_FF.hpp "UseTheForce/SHAPES_FF.hpp"
62     * @brief SHAPES Force Field Parser
63     */
64     class SHAPES_FF : public ForceField {
65     public:
66     SHAPES_FF();
67     ~SHAPES_FF();
68    
69     virtual void parse(const std::string& filename);
70    
71     virtual void parseShapeFile(string shapeFileName, ShapeAtomType* st);
72    
73     double findLargestContactDistance(ShapeAtomType* st);
74     double findCutoffDistance(ShapeAtomType* st);
75     virtual void calcRcut( void );
76    
77     private:
78     SectionParserManager spMan_;
79    
80     };
81    
82     } //end namespace oopse
83     #endif //USETHEFORCE_SHAPES_FF_HPP
84