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!! @author Charles F. Vardeman II |
47 |
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!! @author Matthew Meineke |
48 |
< |
!! @version $Id: doForces.F90,v 1.46 2005-09-18 20:45:38 chrisfen Exp $, $Date: 2005-09-18 20:45:38 $, $Name: not supported by cvs2svn $, $Revision: 1.46 $ |
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!! @version $Id: doForces.F90,v 1.75 2006-01-09 22:22:35 chuckv Exp $, $Date: 2006-01-09 22:22:35 $, $Name: not supported by cvs2svn $, $Revision: 1.75 $ |
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module doForces |
58 |
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use lj |
59 |
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use sticky |
60 |
|
use electrostatic_module |
61 |
< |
use reaction_field_module |
62 |
< |
use gb_pair |
61 |
> |
use gayberne |
62 |
|
use shapes |
63 |
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use vector_class |
64 |
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use eam |
65 |
+ |
use suttonchen |
66 |
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use status |
67 |
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#ifdef IS_MPI |
68 |
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use mpiSimulation |
75 |
|
#include "UseTheForce/fSwitchingFunction.h" |
76 |
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#include "UseTheForce/fCutoffPolicy.h" |
77 |
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#include "UseTheForce/DarkSide/fInteractionMap.h" |
78 |
+ |
#include "UseTheForce/DarkSide/fElectrostaticSummationMethod.h" |
79 |
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|
80 |
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|
81 |
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INTEGER, PARAMETER:: PREPAIR_LOOP = 1 |
86 |
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logical, save :: haveSaneForceField = .false. |
87 |
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logical, save :: haveInteractionHash = .false. |
88 |
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logical, save :: haveGtypeCutoffMap = .false. |
89 |
< |
logical, save :: haveRlist = .false. |
89 |
> |
logical, save :: haveDefaultCutoffs = .false. |
90 |
> |
logical, save :: haveSkinThickness = .false. |
91 |
> |
logical, save :: haveElectrostaticSummationMethod = .false. |
92 |
> |
logical, save :: haveCutoffPolicy = .false. |
93 |
> |
logical, save :: VisitCutoffsAfterComputing = .false. |
94 |
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|
95 |
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logical, save :: FF_uses_DirectionalAtoms |
96 |
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logical, save :: FF_uses_Dipoles |
97 |
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logical, save :: FF_uses_GayBerne |
98 |
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logical, save :: FF_uses_EAM |
99 |
+ |
logical, save :: FF_uses_SC |
100 |
+ |
logical, save :: FF_uses_MEAM |
101 |
+ |
|
102 |
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|
103 |
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logical, save :: SIM_uses_DirectionalAtoms |
104 |
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logical, save :: SIM_uses_EAM |
105 |
+ |
logical, save :: SIM_uses_SC |
106 |
+ |
logical, save :: SIM_uses_MEAM |
107 |
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logical, save :: SIM_requires_postpair_calc |
108 |
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logical, save :: SIM_requires_prepair_calc |
109 |
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logical, save :: SIM_uses_PBC |
110 |
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|
111 |
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integer, save :: electrostaticSummationMethod |
112 |
+ |
integer, save :: cutoffPolicy = TRADITIONAL_CUTOFF_POLICY |
113 |
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|
114 |
+ |
real(kind=dp), save :: defaultRcut, defaultRsw, largestRcut |
115 |
+ |
real(kind=dp), save :: skinThickness |
116 |
+ |
logical, save :: defaultDoShift |
117 |
+ |
|
118 |
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public :: init_FF |
119 |
< |
public :: setDefaultCutoffs |
119 |
> |
public :: setCutoffs |
120 |
> |
public :: cWasLame |
121 |
> |
public :: setElectrostaticMethod |
122 |
> |
public :: setCutoffPolicy |
123 |
> |
public :: setSkinThickness |
124 |
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public :: do_force_loop |
106 |
– |
public :: createInteractionHash |
107 |
– |
public :: createGtypeCutoffMap |
108 |
– |
public :: getStickyCut |
109 |
– |
public :: getStickyPowerCut |
110 |
– |
public :: getGayBerneCut |
111 |
– |
public :: getEAMCut |
112 |
– |
public :: getShapeCut |
125 |
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|
126 |
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#ifdef PROFILE |
127 |
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public :: getforcetime |
134 |
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! Bit hash to determine pair-pair interactions. |
135 |
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integer, dimension(:,:), allocatable :: InteractionHash |
136 |
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real(kind=dp), dimension(:), allocatable :: atypeMaxCutoff |
137 |
< |
real(kind=dp), dimension(:), allocatable :: groupMaxCutoff |
138 |
< |
integer, dimension(:), allocatable :: groupToGtype |
139 |
< |
real(kind=dp), dimension(:), allocatable :: gtypeMaxCutoff |
137 |
> |
real(kind=dp), dimension(:), allocatable, target :: groupMaxCutoffRow |
138 |
> |
real(kind=dp), dimension(:), pointer :: groupMaxCutoffCol |
139 |
> |
|
140 |
> |
integer, dimension(:), allocatable, target :: groupToGtypeRow |
141 |
> |
integer, dimension(:), pointer :: groupToGtypeCol => null() |
142 |
> |
|
143 |
> |
real(kind=dp), dimension(:), allocatable,target :: gtypeMaxCutoffRow |
144 |
> |
real(kind=dp), dimension(:), pointer :: gtypeMaxCutoffCol |
145 |
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type ::gtypeCutoffs |
146 |
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real(kind=dp) :: rcut |
147 |
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real(kind=dp) :: rcutsq |
149 |
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end type gtypeCutoffs |
150 |
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type(gtypeCutoffs), dimension(:,:), allocatable :: gtypeCutoffMap |
151 |
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|
135 |
– |
integer, save :: cutoffPolicy = TRADITIONAL_CUTOFF_POLICY |
136 |
– |
real(kind=dp),save :: defaultRcut, defaultRsw, defaultRlist |
137 |
– |
|
152 |
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contains |
153 |
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|
154 |
< |
subroutine createInteractionHash(status) |
154 |
> |
subroutine createInteractionHash() |
155 |
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integer :: nAtypes |
142 |
– |
integer, intent(out) :: status |
156 |
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integer :: i |
157 |
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integer :: j |
158 |
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integer :: iHash |
164 |
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logical :: i_is_GB |
165 |
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logical :: i_is_EAM |
166 |
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logical :: i_is_Shape |
167 |
+ |
logical :: i_is_SC |
168 |
+ |
logical :: i_is_MEAM |
169 |
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logical :: j_is_LJ |
170 |
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logical :: j_is_Elect |
171 |
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logical :: j_is_Sticky |
173 |
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logical :: j_is_GB |
174 |
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logical :: j_is_EAM |
175 |
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logical :: j_is_Shape |
176 |
+ |
logical :: j_is_SC |
177 |
+ |
logical :: j_is_MEAM |
178 |
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real(kind=dp) :: myRcut |
179 |
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|
163 |
– |
status = 0 |
164 |
– |
|
180 |
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if (.not. associated(atypes)) then |
181 |
< |
call handleError("atype", "atypes was not present before call of createInteractionHash!") |
167 |
< |
status = -1 |
181 |
> |
call handleError("doForces", "atypes was not present before call of createInteractionHash!") |
182 |
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return |
183 |
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endif |
184 |
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|
185 |
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nAtypes = getSize(atypes) |
186 |
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|
187 |
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if (nAtypes == 0) then |
188 |
< |
status = -1 |
188 |
> |
call handleError("doForces", "nAtypes was zero during call of createInteractionHash!") |
189 |
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return |
190 |
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end if |
191 |
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|
192 |
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if (.not. allocated(InteractionHash)) then |
193 |
+ |
allocate(InteractionHash(nAtypes,nAtypes)) |
194 |
+ |
else |
195 |
+ |
deallocate(InteractionHash) |
196 |
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allocate(InteractionHash(nAtypes,nAtypes)) |
197 |
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endif |
198 |
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|
199 |
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if (.not. allocated(atypeMaxCutoff)) then |
200 |
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allocate(atypeMaxCutoff(nAtypes)) |
201 |
+ |
else |
202 |
+ |
deallocate(atypeMaxCutoff) |
203 |
+ |
allocate(atypeMaxCutoff(nAtypes)) |
204 |
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endif |
205 |
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|
206 |
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do i = 1, nAtypes |
211 |
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call getElementProperty(atypes, i, "is_GayBerne", i_is_GB) |
212 |
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call getElementProperty(atypes, i, "is_EAM", i_is_EAM) |
213 |
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call getElementProperty(atypes, i, "is_Shape", i_is_Shape) |
214 |
+ |
call getElementProperty(atypes, i, "is_SC", i_is_SC) |
215 |
+ |
call getElementProperty(atypes, i, "is_MEAM", i_is_MEAM) |
216 |
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|
217 |
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do j = i, nAtypes |
218 |
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|
226 |
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call getElementProperty(atypes, j, "is_GayBerne", j_is_GB) |
227 |
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call getElementProperty(atypes, j, "is_EAM", j_is_EAM) |
228 |
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call getElementProperty(atypes, j, "is_Shape", j_is_Shape) |
229 |
+ |
call getElementProperty(atypes, j, "is_SC", j_is_SC) |
230 |
+ |
call getElementProperty(atypes, j, "is_MEAM", j_is_MEAM) |
231 |
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|
232 |
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if (i_is_LJ .and. j_is_LJ) then |
233 |
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iHash = ior(iHash, LJ_PAIR) |
249 |
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iHash = ior(iHash, EAM_PAIR) |
250 |
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endif |
251 |
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|
252 |
+ |
if (i_is_SC .and. j_is_SC) then |
253 |
+ |
iHash = ior(iHash, SC_PAIR) |
254 |
+ |
endif |
255 |
+ |
|
256 |
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if (i_is_GB .and. j_is_GB) iHash = ior(iHash, GAYBERNE_PAIR) |
257 |
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if (i_is_GB .and. j_is_LJ) iHash = ior(iHash, GAYBERNE_LJ) |
258 |
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if (i_is_LJ .and. j_is_GB) iHash = ior(iHash, GAYBERNE_LJ) |
272 |
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haveInteractionHash = .true. |
273 |
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end subroutine createInteractionHash |
274 |
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|
275 |
< |
subroutine createGtypeCutoffMap(stat) |
275 |
> |
subroutine createGtypeCutoffMap() |
276 |
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|
249 |
– |
integer, intent(out), optional :: stat |
277 |
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logical :: i_is_LJ |
278 |
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logical :: i_is_Elect |
279 |
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logical :: i_is_Sticky |
281 |
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logical :: i_is_GB |
282 |
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logical :: i_is_EAM |
283 |
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logical :: i_is_Shape |
284 |
+ |
logical :: i_is_SC |
285 |
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logical :: GtypeFound |
286 |
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|
287 |
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integer :: myStatus, nAtypes, i, j, istart, iend, jstart, jend |
288 |
< |
integer :: n_in_i, me_i, ia, g, atom1, nGroupTypes |
288 |
> |
integer :: n_in_i, me_i, ia, g, atom1, ja, n_in_j,me_j |
289 |
|
integer :: nGroupsInRow |
290 |
< |
real(kind=dp):: thisSigma, bigSigma, thisRcut, tol, skin |
290 |
> |
integer :: nGroupsInCol |
291 |
> |
integer :: nGroupTypesRow,nGroupTypesCol |
292 |
> |
real(kind=dp):: thisSigma, bigSigma, thisRcut, tradRcut, tol |
293 |
|
real(kind=dp) :: biggestAtypeCutoff |
294 |
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|
265 |
– |
stat = 0 |
295 |
|
if (.not. haveInteractionHash) then |
296 |
< |
call createInteractionHash(myStatus) |
268 |
< |
if (myStatus .ne. 0) then |
269 |
< |
write(default_error, *) 'createInteractionHash failed in doForces!' |
270 |
< |
stat = -1 |
271 |
< |
return |
272 |
< |
endif |
296 |
> |
call createInteractionHash() |
297 |
|
endif |
298 |
|
#ifdef IS_MPI |
299 |
|
nGroupsInRow = getNgroupsInRow(plan_group_row) |
300 |
+ |
nGroupsInCol = getNgroupsInCol(plan_group_col) |
301 |
|
#endif |
302 |
|
nAtypes = getSize(atypes) |
303 |
|
! Set all of the initial cutoffs to zero. |
311 |
|
call getElementProperty(atypes, i, "is_GayBerne", i_is_GB) |
312 |
|
call getElementProperty(atypes, i, "is_EAM", i_is_EAM) |
313 |
|
call getElementProperty(atypes, i, "is_Shape", i_is_Shape) |
314 |
< |
|
314 |
> |
call getElementProperty(atypes, i, "is_SC", i_is_SC) |
315 |
|
|
316 |
< |
if (i_is_LJ) then |
317 |
< |
thisRcut = getSigma(i) * 2.5_dp |
318 |
< |
if (thisRCut .gt. atypeMaxCutoff(i)) atypeMaxCutoff(i) = thisRCut |
319 |
< |
endif |
320 |
< |
if (i_is_Elect) then |
321 |
< |
thisRcut = defaultRcut |
322 |
< |
if (thisRCut .gt. atypeMaxCutoff(i)) atypeMaxCutoff(i) = thisRCut |
323 |
< |
endif |
324 |
< |
if (i_is_Sticky) then |
325 |
< |
thisRcut = getStickyCut(i) |
326 |
< |
if (thisRCut .gt. atypeMaxCutoff(i)) atypeMaxCutoff(i) = thisRCut |
327 |
< |
endif |
328 |
< |
if (i_is_StickyP) then |
329 |
< |
thisRcut = getStickyPowerCut(i) |
330 |
< |
if (thisRCut .gt. atypeMaxCutoff(i)) atypeMaxCutoff(i) = thisRCut |
331 |
< |
endif |
332 |
< |
if (i_is_GB) then |
333 |
< |
thisRcut = getGayBerneCut(i) |
334 |
< |
if (thisRCut .gt. atypeMaxCutoff(i)) atypeMaxCutoff(i) = thisRCut |
335 |
< |
endif |
336 |
< |
if (i_is_EAM) then |
337 |
< |
thisRcut = getEAMCut(i) |
338 |
< |
if (thisRCut .gt. atypeMaxCutoff(i)) atypeMaxCutoff(i) = thisRCut |
339 |
< |
endif |
340 |
< |
if (i_is_Shape) then |
341 |
< |
thisRcut = getShapeCut(i) |
342 |
< |
if (thisRCut .gt. atypeMaxCutoff(i)) atypeMaxCutoff(i) = thisRCut |
316 |
> |
if (haveDefaultCutoffs) then |
317 |
> |
atypeMaxCutoff(i) = defaultRcut |
318 |
> |
else |
319 |
> |
if (i_is_LJ) then |
320 |
> |
thisRcut = getSigma(i) * 2.5_dp |
321 |
> |
if (thisRCut .gt. atypeMaxCutoff(i)) atypeMaxCutoff(i) = thisRCut |
322 |
> |
endif |
323 |
> |
if (i_is_Elect) then |
324 |
> |
thisRcut = defaultRcut |
325 |
> |
if (thisRCut .gt. atypeMaxCutoff(i)) atypeMaxCutoff(i) = thisRCut |
326 |
> |
endif |
327 |
> |
if (i_is_Sticky) then |
328 |
> |
thisRcut = getStickyCut(i) |
329 |
> |
if (thisRCut .gt. atypeMaxCutoff(i)) atypeMaxCutoff(i) = thisRCut |
330 |
> |
endif |
331 |
> |
if (i_is_StickyP) then |
332 |
> |
thisRcut = getStickyPowerCut(i) |
333 |
> |
if (thisRCut .gt. atypeMaxCutoff(i)) atypeMaxCutoff(i) = thisRCut |
334 |
> |
endif |
335 |
> |
if (i_is_GB) then |
336 |
> |
thisRcut = getGayBerneCut(i) |
337 |
> |
if (thisRCut .gt. atypeMaxCutoff(i)) atypeMaxCutoff(i) = thisRCut |
338 |
> |
endif |
339 |
> |
if (i_is_EAM) then |
340 |
> |
thisRcut = getEAMCut(i) |
341 |
> |
if (thisRCut .gt. atypeMaxCutoff(i)) atypeMaxCutoff(i) = thisRCut |
342 |
> |
endif |
343 |
> |
if (i_is_Shape) then |
344 |
> |
thisRcut = getShapeCut(i) |
345 |
> |
if (thisRCut .gt. atypeMaxCutoff(i)) atypeMaxCutoff(i) = thisRCut |
346 |
> |
endif |
347 |
> |
if (i_is_SC) then |
348 |
> |
thisRcut = getSCCut(i) |
349 |
> |
if (thisRCut .gt. atypeMaxCutoff(i)) atypeMaxCutoff(i) = thisRCut |
350 |
> |
endif |
351 |
|
endif |
352 |
< |
|
352 |
> |
|
353 |
|
if (atypeMaxCutoff(i).gt.biggestAtypeCutoff) then |
354 |
|
biggestAtypeCutoff = atypeMaxCutoff(i) |
355 |
|
endif |
356 |
+ |
|
357 |
|
endif |
358 |
|
enddo |
325 |
– |
|
326 |
– |
nGroupTypes = 0 |
359 |
|
|
360 |
|
istart = 1 |
361 |
+ |
jstart = 1 |
362 |
|
#ifdef IS_MPI |
363 |
|
iend = nGroupsInRow |
364 |
+ |
jend = nGroupsInCol |
365 |
|
#else |
366 |
|
iend = nGroups |
367 |
+ |
jend = nGroups |
368 |
|
#endif |
369 |
|
|
370 |
|
!! allocate the groupToGtype and gtypeMaxCutoff here. |
371 |
< |
if(.not.allocated(groupToGtype)) then |
372 |
< |
allocate(groupToGtype(iend)) |
373 |
< |
allocate(groupMaxCutoff(iend)) |
374 |
< |
allocate(gtypeMaxCutoff(iend)) |
375 |
< |
groupMaxCutoff = 0.0_dp |
376 |
< |
gtypeMaxCutoff = 0.0_dp |
371 |
> |
if(.not.allocated(groupToGtypeRow)) then |
372 |
> |
! allocate(groupToGtype(iend)) |
373 |
> |
allocate(groupToGtypeRow(iend)) |
374 |
> |
else |
375 |
> |
deallocate(groupToGtypeRow) |
376 |
> |
allocate(groupToGtypeRow(iend)) |
377 |
|
endif |
378 |
+ |
if(.not.allocated(groupMaxCutoffRow)) then |
379 |
+ |
allocate(groupMaxCutoffRow(iend)) |
380 |
+ |
else |
381 |
+ |
deallocate(groupMaxCutoffRow) |
382 |
+ |
allocate(groupMaxCutoffRow(iend)) |
383 |
+ |
end if |
384 |
+ |
|
385 |
+ |
if(.not.allocated(gtypeMaxCutoffRow)) then |
386 |
+ |
allocate(gtypeMaxCutoffRow(iend)) |
387 |
+ |
else |
388 |
+ |
deallocate(gtypeMaxCutoffRow) |
389 |
+ |
allocate(gtypeMaxCutoffRow(iend)) |
390 |
+ |
endif |
391 |
+ |
|
392 |
+ |
|
393 |
+ |
#ifdef IS_MPI |
394 |
+ |
! We only allocate new storage if we are in MPI because Ncol /= Nrow |
395 |
+ |
if(.not.associated(groupToGtypeCol)) then |
396 |
+ |
allocate(groupToGtypeCol(jend)) |
397 |
+ |
else |
398 |
+ |
deallocate(groupToGtypeCol) |
399 |
+ |
allocate(groupToGtypeCol(jend)) |
400 |
+ |
end if |
401 |
+ |
|
402 |
+ |
if(.not.associated(groupMaxCutoffCol)) then |
403 |
+ |
allocate(groupMaxCutoffCol(jend)) |
404 |
+ |
else |
405 |
+ |
deallocate(groupMaxCutoffCol) |
406 |
+ |
allocate(groupMaxCutoffCol(jend)) |
407 |
+ |
end if |
408 |
+ |
if(.not.associated(gtypeMaxCutoffCol)) then |
409 |
+ |
allocate(gtypeMaxCutoffCol(jend)) |
410 |
+ |
else |
411 |
+ |
deallocate(gtypeMaxCutoffCol) |
412 |
+ |
allocate(gtypeMaxCutoffCol(jend)) |
413 |
+ |
end if |
414 |
+ |
|
415 |
+ |
groupMaxCutoffCol = 0.0_dp |
416 |
+ |
gtypeMaxCutoffCol = 0.0_dp |
417 |
+ |
|
418 |
+ |
#endif |
419 |
+ |
groupMaxCutoffRow = 0.0_dp |
420 |
+ |
gtypeMaxCutoffRow = 0.0_dp |
421 |
+ |
|
422 |
+ |
|
423 |
|
!! first we do a single loop over the cutoff groups to find the |
424 |
|
!! largest cutoff for any atypes present in this group. We also |
425 |
|
!! create gtypes at this point. |
426 |
|
|
427 |
|
tol = 1.0d-6 |
428 |
< |
|
428 |
> |
nGroupTypesRow = 0 |
429 |
> |
nGroupTypesCol = 0 |
430 |
|
do i = istart, iend |
431 |
|
n_in_i = groupStartRow(i+1) - groupStartRow(i) |
432 |
< |
groupMaxCutoff(i) = 0.0_dp |
432 |
> |
groupMaxCutoffRow(i) = 0.0_dp |
433 |
|
do ia = groupStartRow(i), groupStartRow(i+1)-1 |
434 |
|
atom1 = groupListRow(ia) |
435 |
|
#ifdef IS_MPI |
437 |
|
#else |
438 |
|
me_i = atid(atom1) |
439 |
|
#endif |
440 |
< |
if (atypeMaxCutoff(me_i).gt.groupMaxCutoff(i)) then |
441 |
< |
groupMaxCutoff(i)=atypeMaxCutoff(me_i) |
440 |
> |
if (atypeMaxCutoff(me_i).gt.groupMaxCutoffRow(i)) then |
441 |
> |
groupMaxCutoffRow(i)=atypeMaxCutoff(me_i) |
442 |
|
endif |
443 |
|
enddo |
444 |
+ |
if (nGroupTypesRow.eq.0) then |
445 |
+ |
nGroupTypesRow = nGroupTypesRow + 1 |
446 |
+ |
gtypeMaxCutoffRow(nGroupTypesRow) = groupMaxCutoffRow(i) |
447 |
+ |
groupToGtypeRow(i) = nGroupTypesRow |
448 |
+ |
else |
449 |
+ |
GtypeFound = .false. |
450 |
+ |
do g = 1, nGroupTypesRow |
451 |
+ |
if ( abs(groupMaxCutoffRow(i) - gtypeMaxCutoffRow(g)).lt.tol) then |
452 |
+ |
groupToGtypeRow(i) = g |
453 |
+ |
GtypeFound = .true. |
454 |
+ |
endif |
455 |
+ |
enddo |
456 |
+ |
if (.not.GtypeFound) then |
457 |
+ |
nGroupTypesRow = nGroupTypesRow + 1 |
458 |
+ |
gtypeMaxCutoffRow(nGroupTypesRow) = groupMaxCutoffRow(i) |
459 |
+ |
groupToGtypeRow(i) = nGroupTypesRow |
460 |
+ |
endif |
461 |
+ |
endif |
462 |
+ |
enddo |
463 |
|
|
464 |
< |
if (nGroupTypes.eq.0) then |
465 |
< |
nGroupTypes = nGroupTypes + 1 |
466 |
< |
gtypeMaxCutoff(nGroupTypes) = groupMaxCutoff(i) |
467 |
< |
groupToGtype(i) = nGroupTypes |
464 |
> |
#ifdef IS_MPI |
465 |
> |
do j = jstart, jend |
466 |
> |
n_in_j = groupStartCol(j+1) - groupStartCol(j) |
467 |
> |
groupMaxCutoffCol(j) = 0.0_dp |
468 |
> |
do ja = groupStartCol(j), groupStartCol(j+1)-1 |
469 |
> |
atom1 = groupListCol(ja) |
470 |
> |
|
471 |
> |
me_j = atid_col(atom1) |
472 |
> |
|
473 |
> |
if (atypeMaxCutoff(me_j).gt.groupMaxCutoffCol(j)) then |
474 |
> |
groupMaxCutoffCol(j)=atypeMaxCutoff(me_j) |
475 |
> |
endif |
476 |
> |
enddo |
477 |
> |
|
478 |
> |
if (nGroupTypesCol.eq.0) then |
479 |
> |
nGroupTypesCol = nGroupTypesCol + 1 |
480 |
> |
gtypeMaxCutoffCol(nGroupTypesCol) = groupMaxCutoffCol(j) |
481 |
> |
groupToGtypeCol(j) = nGroupTypesCol |
482 |
|
else |
483 |
|
GtypeFound = .false. |
484 |
< |
do g = 1, nGroupTypes |
485 |
< |
if ( abs(groupMaxCutoff(i) - gtypeMaxCutoff(g)).lt.tol) then |
486 |
< |
groupToGtype(i) = g |
484 |
> |
do g = 1, nGroupTypesCol |
485 |
> |
if ( abs(groupMaxCutoffCol(j) - gtypeMaxCutoffCol(g)).lt.tol) then |
486 |
> |
groupToGtypeCol(j) = g |
487 |
|
GtypeFound = .true. |
488 |
|
endif |
489 |
|
enddo |
490 |
|
if (.not.GtypeFound) then |
491 |
< |
nGroupTypes = nGroupTypes + 1 |
492 |
< |
gtypeMaxCutoff(nGroupTypes) = groupMaxCutoff(i) |
493 |
< |
groupToGtype(i) = nGroupTypes |
491 |
> |
nGroupTypesCol = nGroupTypesCol + 1 |
492 |
> |
gtypeMaxCutoffCol(nGroupTypesCol) = groupMaxCutoffCol(j) |
493 |
> |
groupToGtypeCol(j) = nGroupTypesCol |
494 |
|
endif |
495 |
|
endif |
496 |
|
enddo |
497 |
|
|
498 |
+ |
#else |
499 |
+ |
! Set pointers to information we just found |
500 |
+ |
nGroupTypesCol = nGroupTypesRow |
501 |
+ |
groupToGtypeCol => groupToGtypeRow |
502 |
+ |
gtypeMaxCutoffCol => gtypeMaxCutoffRow |
503 |
+ |
groupMaxCutoffCol => groupMaxCutoffRow |
504 |
+ |
#endif |
505 |
+ |
|
506 |
|
!! allocate the gtypeCutoffMap here. |
507 |
< |
allocate(gtypeCutoffMap(nGroupTypes,nGroupTypes)) |
507 |
> |
allocate(gtypeCutoffMap(nGroupTypesRow,nGroupTypesCol)) |
508 |
|
!! then we do a double loop over all the group TYPES to find the cutoff |
509 |
|
!! map between groups of two types |
510 |
< |
|
511 |
< |
do i = 1, nGroupTypes |
512 |
< |
do j = 1, nGroupTypes |
510 |
> |
tradRcut = max(maxval(gtypeMaxCutoffRow),maxval(gtypeMaxCutoffCol)) |
511 |
> |
|
512 |
> |
do i = 1, nGroupTypesRow |
513 |
> |
do j = 1, nGroupTypesCol |
514 |
|
|
515 |
|
select case(cutoffPolicy) |
516 |
|
case(TRADITIONAL_CUTOFF_POLICY) |
517 |
< |
thisRcut = maxval(gtypeMaxCutoff) |
517 |
> |
thisRcut = tradRcut |
518 |
|
case(MIX_CUTOFF_POLICY) |
519 |
< |
thisRcut = 0.5_dp * (gtypeMaxCutoff(i) + gtypeMaxCutoff(j)) |
519 |
> |
thisRcut = 0.5_dp * (gtypeMaxCutoffRow(i) + gtypeMaxCutoffCol(j)) |
520 |
|
case(MAX_CUTOFF_POLICY) |
521 |
< |
thisRcut = max(gtypeMaxCutoff(i), gtypeMaxCutoff(j)) |
521 |
> |
thisRcut = max(gtypeMaxCutoffRow(i), gtypeMaxCutoffCol(j)) |
522 |
|
case default |
523 |
|
call handleError("createGtypeCutoffMap", "Unknown Cutoff Policy") |
524 |
|
return |
525 |
|
end select |
526 |
|
gtypeCutoffMap(i,j)%rcut = thisRcut |
527 |
+ |
|
528 |
+ |
if (thisRcut.gt.largestRcut) largestRcut = thisRcut |
529 |
+ |
|
530 |
|
gtypeCutoffMap(i,j)%rcutsq = thisRcut*thisRcut |
405 |
– |
skin = defaultRlist - defaultRcut |
406 |
– |
gtypeCutoffMap(i,j)%rlistsq = (thisRcut + skin)**2 |
531 |
|
|
532 |
+ |
if (.not.haveSkinThickness) then |
533 |
+ |
skinThickness = 1.0_dp |
534 |
+ |
endif |
535 |
+ |
|
536 |
+ |
gtypeCutoffMap(i,j)%rlistsq = (thisRcut + skinThickness)**2 |
537 |
+ |
|
538 |
+ |
! sanity check |
539 |
+ |
|
540 |
+ |
if (haveDefaultCutoffs) then |
541 |
+ |
if (abs(gtypeCutoffMap(i,j)%rcut - defaultRcut).gt.0.0001) then |
542 |
+ |
call handleError("createGtypeCutoffMap", "user-specified rCut does not match computed group Cutoff") |
543 |
+ |
endif |
544 |
+ |
endif |
545 |
|
enddo |
546 |
|
enddo |
547 |
+ |
|
548 |
+ |
if(allocated(gtypeMaxCutoffRow)) deallocate(gtypeMaxCutoffRow) |
549 |
+ |
if(allocated(groupMaxCutoffRow)) deallocate(groupMaxCutoffRow) |
550 |
+ |
if(allocated(atypeMaxCutoff)) deallocate(atypeMaxCutoff) |
551 |
+ |
#ifdef IS_MPI |
552 |
+ |
if(associated(groupMaxCutoffCol)) deallocate(groupMaxCutoffCol) |
553 |
+ |
if(associated(gtypeMaxCutoffCol)) deallocate(gtypeMaxCutoffCol) |
554 |
+ |
#endif |
555 |
+ |
groupMaxCutoffCol => null() |
556 |
+ |
gtypeMaxCutoffCol => null() |
557 |
|
|
558 |
|
haveGtypeCutoffMap = .true. |
559 |
|
end subroutine createGtypeCutoffMap |
560 |
|
|
561 |
< |
subroutine setDefaultCutoffs(defRcut, defRsw, defRlist, cutPolicy) |
415 |
< |
real(kind=dp),intent(in) :: defRcut, defRsw, defRlist |
416 |
< |
integer, intent(in) :: cutPolicy |
561 |
> |
subroutine setCutoffs(defRcut, defRsw) |
562 |
|
|
563 |
+ |
real(kind=dp),intent(in) :: defRcut, defRsw |
564 |
+ |
character(len = statusMsgSize) :: errMsg |
565 |
+ |
integer :: localError |
566 |
+ |
|
567 |
|
defaultRcut = defRcut |
568 |
|
defaultRsw = defRsw |
569 |
< |
defaultRlist = defRlist |
570 |
< |
cutoffPolicy = cutPolicy |
571 |
< |
end subroutine setDefaultCutoffs |
569 |
> |
|
570 |
> |
defaultDoShift = .false. |
571 |
> |
if (abs(defaultRcut-defaultRsw) .lt. 0.0001) then |
572 |
> |
|
573 |
> |
write(errMsg, *) & |
574 |
> |
'cutoffRadius and switchingRadius are set to the same', newline & |
575 |
> |
// tab, 'value. OOPSE will use shifted ', newline & |
576 |
> |
// tab, 'potentials instead of switching functions.' |
577 |
> |
|
578 |
> |
call handleInfo("setCutoffs", errMsg) |
579 |
> |
|
580 |
> |
defaultDoShift = .true. |
581 |
> |
|
582 |
> |
endif |
583 |
|
|
584 |
< |
subroutine setCutoffPolicy(cutPolicy) |
584 |
> |
localError = 0 |
585 |
> |
call setLJDefaultCutoff( defaultRcut, defaultDoShift ) |
586 |
> |
call setElectrostaticCutoffRadius( defaultRcut, defaultRsw ) |
587 |
> |
call setCutoffEAM( defaultRcut, localError) |
588 |
> |
if (localError /= 0) then |
589 |
> |
write(errMsg, *) 'An error has occured in setting the EAM cutoff' |
590 |
> |
call handleError("setCutoffs", errMsg) |
591 |
> |
end if |
592 |
> |
call set_switch(GROUP_SWITCH, defaultRsw, defaultRcut) |
593 |
|
|
594 |
+ |
haveDefaultCutoffs = .true. |
595 |
+ |
haveGtypeCutoffMap = .false. |
596 |
+ |
end subroutine setCutoffs |
597 |
+ |
|
598 |
+ |
subroutine cWasLame() |
599 |
+ |
|
600 |
+ |
VisitCutoffsAfterComputing = .true. |
601 |
+ |
return |
602 |
+ |
|
603 |
+ |
end subroutine cWasLame |
604 |
+ |
|
605 |
+ |
subroutine setCutoffPolicy(cutPolicy) |
606 |
+ |
|
607 |
|
integer, intent(in) :: cutPolicy |
608 |
+ |
|
609 |
|
cutoffPolicy = cutPolicy |
610 |
< |
call createGtypeCutoffMap() |
611 |
< |
end subroutine setCutoffPolicy |
430 |
< |
|
610 |
> |
haveCutoffPolicy = .true. |
611 |
> |
haveGtypeCutoffMap = .false. |
612 |
|
|
613 |
< |
subroutine setSimVariables() |
614 |
< |
SIM_uses_DirectionalAtoms = SimUsesDirectionalAtoms() |
615 |
< |
SIM_uses_EAM = SimUsesEAM() |
435 |
< |
SIM_requires_postpair_calc = SimRequiresPostpairCalc() |
436 |
< |
SIM_requires_prepair_calc = SimRequiresPrepairCalc() |
437 |
< |
SIM_uses_PBC = SimUsesPBC() |
613 |
> |
end subroutine setCutoffPolicy |
614 |
> |
|
615 |
> |
subroutine setElectrostaticMethod( thisESM ) |
616 |
|
|
617 |
< |
haveSIMvariables = .true. |
617 |
> |
integer, intent(in) :: thisESM |
618 |
|
|
619 |
< |
return |
620 |
< |
end subroutine setSimVariables |
619 |
> |
electrostaticSummationMethod = thisESM |
620 |
> |
haveElectrostaticSummationMethod = .true. |
621 |
> |
|
622 |
> |
end subroutine setElectrostaticMethod |
623 |
|
|
624 |
+ |
subroutine setSkinThickness( thisSkin ) |
625 |
+ |
|
626 |
+ |
real(kind=dp), intent(in) :: thisSkin |
627 |
+ |
|
628 |
+ |
skinThickness = thisSkin |
629 |
+ |
haveSkinThickness = .true. |
630 |
+ |
haveGtypeCutoffMap = .false. |
631 |
+ |
|
632 |
+ |
end subroutine setSkinThickness |
633 |
+ |
|
634 |
+ |
subroutine setSimVariables() |
635 |
+ |
SIM_uses_DirectionalAtoms = SimUsesDirectionalAtoms() |
636 |
+ |
SIM_uses_EAM = SimUsesEAM() |
637 |
+ |
SIM_requires_postpair_calc = SimRequiresPostpairCalc() |
638 |
+ |
SIM_requires_prepair_calc = SimRequiresPrepairCalc() |
639 |
+ |
SIM_uses_PBC = SimUsesPBC() |
640 |
+ |
SIM_uses_SC = SimUsesSC() |
641 |
+ |
|
642 |
+ |
haveSIMvariables = .true. |
643 |
+ |
|
644 |
+ |
return |
645 |
+ |
end subroutine setSimVariables |
646 |
+ |
|
647 |
|
subroutine doReadyCheck(error) |
648 |
|
integer, intent(out) :: error |
649 |
|
|
652 |
|
error = 0 |
653 |
|
|
654 |
|
if (.not. haveInteractionHash) then |
655 |
< |
myStatus = 0 |
453 |
< |
call createInteractionHash(myStatus) |
454 |
< |
if (myStatus .ne. 0) then |
455 |
< |
write(default_error, *) 'createInteractionHash failed in doForces!' |
456 |
< |
error = -1 |
457 |
< |
return |
458 |
< |
endif |
655 |
> |
call createInteractionHash() |
656 |
|
endif |
657 |
|
|
658 |
|
if (.not. haveGtypeCutoffMap) then |
659 |
< |
myStatus = 0 |
463 |
< |
call createGtypeCutoffMap(myStatus) |
464 |
< |
if (myStatus .ne. 0) then |
465 |
< |
write(default_error, *) 'createGtypeCutoffMap failed in doForces!' |
466 |
< |
error = -1 |
467 |
< |
return |
468 |
< |
endif |
659 |
> |
call createGtypeCutoffMap() |
660 |
|
endif |
661 |
|
|
662 |
+ |
|
663 |
+ |
if (VisitCutoffsAfterComputing) then |
664 |
+ |
call set_switch(GROUP_SWITCH, largestRcut, largestRcut) |
665 |
+ |
endif |
666 |
+ |
|
667 |
+ |
|
668 |
|
if (.not. haveSIMvariables) then |
669 |
|
call setSimVariables() |
670 |
|
endif |
698 |
|
end subroutine doReadyCheck |
699 |
|
|
700 |
|
|
701 |
< |
subroutine init_FF(thisESM, thisStat) |
701 |
> |
subroutine init_FF(thisStat) |
702 |
|
|
506 |
– |
integer, intent(in) :: thisESM |
507 |
– |
real(kind=dp), intent(in) :: dampingAlpha |
703 |
|
integer, intent(out) :: thisStat |
704 |
|
integer :: my_status, nMatches |
705 |
|
integer, pointer :: MatchList(:) => null() |
511 |
– |
real(kind=dp) :: rcut, rrf, rt, dielect |
706 |
|
|
707 |
|
!! assume things are copacetic, unless they aren't |
708 |
|
thisStat = 0 |
709 |
|
|
516 |
– |
electrostaticSummationMethod = thisESM |
517 |
– |
|
710 |
|
!! init_FF is called *after* all of the atom types have been |
711 |
|
!! defined in atype_module using the new_atype subroutine. |
712 |
|
!! |
717 |
|
FF_uses_Dipoles = .false. |
718 |
|
FF_uses_GayBerne = .false. |
719 |
|
FF_uses_EAM = .false. |
720 |
+ |
FF_uses_SC = .false. |
721 |
|
|
722 |
|
call getMatchingElementList(atypes, "is_Directional", .true., & |
723 |
|
nMatches, MatchList) |
734 |
|
call getMatchingElementList(atypes, "is_EAM", .true., nMatches, MatchList) |
735 |
|
if (nMatches .gt. 0) FF_uses_EAM = .true. |
736 |
|
|
737 |
+ |
call getMatchingElementList(atypes, "is_SC", .true., nMatches, MatchList) |
738 |
+ |
if (nMatches .gt. 0) FF_uses_SC = .true. |
739 |
|
|
740 |
+ |
|
741 |
|
haveSaneForceField = .true. |
742 |
|
|
547 |
– |
!! check to make sure the reaction field setting makes sense |
548 |
– |
|
549 |
– |
if (FF_uses_Dipoles) then |
550 |
– |
if (electrostaticSummationMethod == 3) then |
551 |
– |
dielect = getDielect() |
552 |
– |
call initialize_rf(dielect) |
553 |
– |
endif |
554 |
– |
else |
555 |
– |
if (electrostaticSummationMethod == 3) then |
556 |
– |
write(default_error,*) 'Using Reaction Field with no dipoles? Huh?' |
557 |
– |
thisStat = -1 |
558 |
– |
haveSaneForceField = .false. |
559 |
– |
return |
560 |
– |
endif |
561 |
– |
endif |
562 |
– |
|
743 |
|
if (FF_uses_EAM) then |
744 |
|
call init_EAM_FF(my_status) |
745 |
|
if (my_status /= 0) then |
750 |
|
end if |
751 |
|
endif |
752 |
|
|
573 |
– |
if (FF_uses_GayBerne) then |
574 |
– |
call check_gb_pair_FF(my_status) |
575 |
– |
if (my_status .ne. 0) then |
576 |
– |
thisStat = -1 |
577 |
– |
haveSaneForceField = .false. |
578 |
– |
return |
579 |
– |
endif |
580 |
– |
endif |
581 |
– |
|
753 |
|
if (.not. haveNeighborList) then |
754 |
|
!! Create neighbor lists |
755 |
|
call expandNeighborList(nLocal, my_status) |
783 |
|
|
784 |
|
!! Stress Tensor |
785 |
|
real( kind = dp), dimension(9) :: tau |
786 |
< |
real ( kind = dp ) :: pot |
786 |
> |
real ( kind = dp ),dimension(LR_POT_TYPES) :: pot |
787 |
|
logical ( kind = 2) :: do_pot_c, do_stress_c |
788 |
|
logical :: do_pot |
789 |
|
logical :: do_stress |
790 |
|
logical :: in_switching_region |
791 |
|
#ifdef IS_MPI |
792 |
< |
real( kind = DP ) :: pot_local |
792 |
> |
real( kind = DP ), dimension(LR_POT_TYPES) :: pot_local |
793 |
|
integer :: nAtomsInRow |
794 |
|
integer :: nAtomsInCol |
795 |
|
integer :: nprocs |
804 |
|
integer :: nlist |
805 |
|
real( kind = DP ) :: ratmsq, rgrpsq, rgrp, vpair, vij |
806 |
|
real( kind = DP ) :: sw, dswdr, swderiv, mf |
807 |
+ |
real( kind = DP ) :: rVal |
808 |
|
real(kind=dp),dimension(3) :: d_atm, d_grp, fpair, fij |
809 |
|
real(kind=dp) :: rfpot, mu_i, virial |
810 |
+ |
real(kind=dp):: rCut |
811 |
|
integer :: me_i, me_j, n_in_i, n_in_j |
812 |
|
logical :: is_dp_i |
813 |
|
integer :: neighborListSize |
816 |
|
integer :: propPack_i, propPack_j |
817 |
|
integer :: loopStart, loopEnd, loop |
818 |
|
integer :: iHash |
819 |
< |
real(kind=dp) :: listSkin = 1.0 |
819 |
> |
integer :: i1 |
820 |
> |
|
821 |
|
|
822 |
|
!! initialize local variables |
823 |
|
|
881 |
|
! (but only on the first time through): |
882 |
|
if (loop .eq. loopStart) then |
883 |
|
#ifdef IS_MPI |
884 |
< |
call checkNeighborList(nGroupsInRow, q_group_row, listSkin, & |
884 |
> |
call checkNeighborList(nGroupsInRow, q_group_row, skinThickness, & |
885 |
|
update_nlist) |
886 |
|
#else |
887 |
< |
call checkNeighborList(nGroups, q_group, listSkin, & |
887 |
> |
call checkNeighborList(nGroups, q_group, skinThickness, & |
888 |
|
update_nlist) |
889 |
|
#endif |
890 |
|
endif |
942 |
|
me_j = atid(j) |
943 |
|
call get_interatomic_vector(q_group(:,i), & |
944 |
|
q_group(:,j), d_grp, rgrpsq) |
945 |
< |
#endif |
945 |
> |
#endif |
946 |
|
|
947 |
< |
if (rgrpsq < gtypeCutoffMap(groupToGtype(i),groupToGtype(j))%rListsq) then |
947 |
> |
if (rgrpsq < gtypeCutoffMap(groupToGtypeRow(i),groupToGtypeCol(j))%rListsq) then |
948 |
|
if (update_nlist) then |
949 |
|
nlist = nlist + 1 |
950 |
|
|
964 |
|
|
965 |
|
list(nlist) = j |
966 |
|
endif |
967 |
+ |
|
968 |
|
|
969 |
< |
if (loop .eq. PAIR_LOOP) then |
970 |
< |
vij = 0.0d0 |
796 |
< |
fij(1:3) = 0.0d0 |
797 |
< |
endif |
969 |
> |
|
970 |
> |
if (rgrpsq < gtypeCutoffMap(groupToGtypeRow(i),groupToGtypeCol(j))%rCutsq) then |
971 |
|
|
972 |
< |
call get_switch(rgrpsq, sw, dswdr, rgrp, group_switch, & |
973 |
< |
in_switching_region) |
974 |
< |
|
975 |
< |
n_in_j = groupStartCol(j+1) - groupStartCol(j) |
976 |
< |
|
977 |
< |
do ia = groupStartRow(i), groupStartRow(i+1)-1 |
978 |
< |
|
979 |
< |
atom1 = groupListRow(ia) |
980 |
< |
|
981 |
< |
inner: do jb = groupStartCol(j), groupStartCol(j+1)-1 |
982 |
< |
|
983 |
< |
atom2 = groupListCol(jb) |
984 |
< |
|
985 |
< |
if (skipThisPair(atom1, atom2)) cycle inner |
986 |
< |
|
987 |
< |
if ((n_in_i .eq. 1).and.(n_in_j .eq. 1)) then |
988 |
< |
d_atm(1:3) = d_grp(1:3) |
989 |
< |
ratmsq = rgrpsq |
990 |
< |
else |
972 |
> |
rCut = gtypeCutoffMap(groupToGtypeRow(i),groupToGtypeCol(j))%rCut |
973 |
> |
if (loop .eq. PAIR_LOOP) then |
974 |
> |
vij = 0.0d0 |
975 |
> |
fij(1:3) = 0.0d0 |
976 |
> |
endif |
977 |
> |
|
978 |
> |
call get_switch(rgrpsq, sw, dswdr, rgrp, & |
979 |
> |
group_switch, in_switching_region) |
980 |
> |
|
981 |
> |
n_in_j = groupStartCol(j+1) - groupStartCol(j) |
982 |
> |
|
983 |
> |
do ia = groupStartRow(i), groupStartRow(i+1)-1 |
984 |
> |
|
985 |
> |
atom1 = groupListRow(ia) |
986 |
> |
|
987 |
> |
inner: do jb = groupStartCol(j), groupStartCol(j+1)-1 |
988 |
> |
|
989 |
> |
atom2 = groupListCol(jb) |
990 |
> |
|
991 |
> |
if (skipThisPair(atom1, atom2)) cycle inner |
992 |
> |
|
993 |
> |
if ((n_in_i .eq. 1).and.(n_in_j .eq. 1)) then |
994 |
> |
d_atm(1:3) = d_grp(1:3) |
995 |
> |
ratmsq = rgrpsq |
996 |
> |
else |
997 |
|
#ifdef IS_MPI |
998 |
< |
call get_interatomic_vector(q_Row(:,atom1), & |
999 |
< |
q_Col(:,atom2), d_atm, ratmsq) |
998 |
> |
call get_interatomic_vector(q_Row(:,atom1), & |
999 |
> |
q_Col(:,atom2), d_atm, ratmsq) |
1000 |
|
#else |
1001 |
< |
call get_interatomic_vector(q(:,atom1), & |
1002 |
< |
q(:,atom2), d_atm, ratmsq) |
1001 |
> |
call get_interatomic_vector(q(:,atom1), & |
1002 |
> |
q(:,atom2), d_atm, ratmsq) |
1003 |
|
#endif |
1004 |
< |
endif |
1005 |
< |
|
1006 |
< |
if (loop .eq. PREPAIR_LOOP) then |
1004 |
> |
endif |
1005 |
> |
|
1006 |
> |
if (loop .eq. PREPAIR_LOOP) then |
1007 |
|
#ifdef IS_MPI |
1008 |
< |
call do_prepair(atom1, atom2, ratmsq, d_atm, sw, & |
1009 |
< |
rgrpsq, d_grp, do_pot, do_stress, & |
1010 |
< |
eFrame, A, f, t, pot_local) |
1008 |
> |
call do_prepair(atom1, atom2, ratmsq, d_atm, sw, & |
1009 |
> |
rgrpsq, d_grp, rCut, do_pot, do_stress, & |
1010 |
> |
eFrame, A, f, t, pot_local) |
1011 |
|
#else |
1012 |
< |
call do_prepair(atom1, atom2, ratmsq, d_atm, sw, & |
1013 |
< |
rgrpsq, d_grp, do_pot, do_stress, & |
1014 |
< |
eFrame, A, f, t, pot) |
1012 |
> |
call do_prepair(atom1, atom2, ratmsq, d_atm, sw, & |
1013 |
> |
rgrpsq, d_grp, rCut, do_pot, do_stress, & |
1014 |
> |
eFrame, A, f, t, pot) |
1015 |
|
#endif |
1016 |
< |
else |
1016 |
> |
else |
1017 |
|
#ifdef IS_MPI |
1018 |
< |
call do_pair(atom1, atom2, ratmsq, d_atm, sw, & |
1019 |
< |
do_pot, & |
1020 |
< |
eFrame, A, f, t, pot_local, vpair, fpair) |
1018 |
> |
call do_pair(atom1, atom2, ratmsq, d_atm, sw, & |
1019 |
> |
do_pot, eFrame, A, f, t, pot_local, vpair, & |
1020 |
> |
fpair, d_grp, rgrp, rCut) |
1021 |
|
#else |
1022 |
< |
call do_pair(atom1, atom2, ratmsq, d_atm, sw, & |
1023 |
< |
do_pot, & |
1024 |
< |
eFrame, A, f, t, pot, vpair, fpair) |
1022 |
> |
call do_pair(atom1, atom2, ratmsq, d_atm, sw, & |
1023 |
> |
do_pot, eFrame, A, f, t, pot, vpair, fpair, & |
1024 |
> |
d_grp, rgrp, rCut) |
1025 |
|
#endif |
1026 |
+ |
vij = vij + vpair |
1027 |
+ |
fij(1:3) = fij(1:3) + fpair(1:3) |
1028 |
+ |
endif |
1029 |
+ |
enddo inner |
1030 |
+ |
enddo |
1031 |
|
|
1032 |
< |
vij = vij + vpair |
1033 |
< |
fij(1:3) = fij(1:3) + fpair(1:3) |
1034 |
< |
endif |
1035 |
< |
enddo inner |
1036 |
< |
enddo |
1037 |
< |
|
1038 |
< |
if (loop .eq. PAIR_LOOP) then |
1039 |
< |
if (in_switching_region) then |
1040 |
< |
swderiv = vij*dswdr/rgrp |
1041 |
< |
fij(1) = fij(1) + swderiv*d_grp(1) |
858 |
< |
fij(2) = fij(2) + swderiv*d_grp(2) |
859 |
< |
fij(3) = fij(3) + swderiv*d_grp(3) |
860 |
< |
|
861 |
< |
do ia=groupStartRow(i), groupStartRow(i+1)-1 |
862 |
< |
atom1=groupListRow(ia) |
863 |
< |
mf = mfactRow(atom1) |
1032 |
> |
if (loop .eq. PAIR_LOOP) then |
1033 |
> |
if (in_switching_region) then |
1034 |
> |
swderiv = vij*dswdr/rgrp |
1035 |
> |
fij(1) = fij(1) + swderiv*d_grp(1) |
1036 |
> |
fij(2) = fij(2) + swderiv*d_grp(2) |
1037 |
> |
fij(3) = fij(3) + swderiv*d_grp(3) |
1038 |
> |
|
1039 |
> |
do ia=groupStartRow(i), groupStartRow(i+1)-1 |
1040 |
> |
atom1=groupListRow(ia) |
1041 |
> |
mf = mfactRow(atom1) |
1042 |
|
#ifdef IS_MPI |
1043 |
< |
f_Row(1,atom1) = f_Row(1,atom1) + swderiv*d_grp(1)*mf |
1044 |
< |
f_Row(2,atom1) = f_Row(2,atom1) + swderiv*d_grp(2)*mf |
1045 |
< |
f_Row(3,atom1) = f_Row(3,atom1) + swderiv*d_grp(3)*mf |
1043 |
> |
f_Row(1,atom1) = f_Row(1,atom1) + swderiv*d_grp(1)*mf |
1044 |
> |
f_Row(2,atom1) = f_Row(2,atom1) + swderiv*d_grp(2)*mf |
1045 |
> |
f_Row(3,atom1) = f_Row(3,atom1) + swderiv*d_grp(3)*mf |
1046 |
|
#else |
1047 |
< |
f(1,atom1) = f(1,atom1) + swderiv*d_grp(1)*mf |
1048 |
< |
f(2,atom1) = f(2,atom1) + swderiv*d_grp(2)*mf |
1049 |
< |
f(3,atom1) = f(3,atom1) + swderiv*d_grp(3)*mf |
1047 |
> |
f(1,atom1) = f(1,atom1) + swderiv*d_grp(1)*mf |
1048 |
> |
f(2,atom1) = f(2,atom1) + swderiv*d_grp(2)*mf |
1049 |
> |
f(3,atom1) = f(3,atom1) + swderiv*d_grp(3)*mf |
1050 |
|
#endif |
1051 |
< |
enddo |
1052 |
< |
|
1053 |
< |
do jb=groupStartCol(j), groupStartCol(j+1)-1 |
1054 |
< |
atom2=groupListCol(jb) |
1055 |
< |
mf = mfactCol(atom2) |
1051 |
> |
enddo |
1052 |
> |
|
1053 |
> |
do jb=groupStartCol(j), groupStartCol(j+1)-1 |
1054 |
> |
atom2=groupListCol(jb) |
1055 |
> |
mf = mfactCol(atom2) |
1056 |
|
#ifdef IS_MPI |
1057 |
< |
f_Col(1,atom2) = f_Col(1,atom2) - swderiv*d_grp(1)*mf |
1058 |
< |
f_Col(2,atom2) = f_Col(2,atom2) - swderiv*d_grp(2)*mf |
1059 |
< |
f_Col(3,atom2) = f_Col(3,atom2) - swderiv*d_grp(3)*mf |
1057 |
> |
f_Col(1,atom2) = f_Col(1,atom2) - swderiv*d_grp(1)*mf |
1058 |
> |
f_Col(2,atom2) = f_Col(2,atom2) - swderiv*d_grp(2)*mf |
1059 |
> |
f_Col(3,atom2) = f_Col(3,atom2) - swderiv*d_grp(3)*mf |
1060 |
|
#else |
1061 |
< |
f(1,atom2) = f(1,atom2) - swderiv*d_grp(1)*mf |
1062 |
< |
f(2,atom2) = f(2,atom2) - swderiv*d_grp(2)*mf |
1063 |
< |
f(3,atom2) = f(3,atom2) - swderiv*d_grp(3)*mf |
1061 |
> |
f(1,atom2) = f(1,atom2) - swderiv*d_grp(1)*mf |
1062 |
> |
f(2,atom2) = f(2,atom2) - swderiv*d_grp(2)*mf |
1063 |
> |
f(3,atom2) = f(3,atom2) - swderiv*d_grp(3)*mf |
1064 |
|
#endif |
1065 |
< |
enddo |
1066 |
< |
endif |
1065 |
> |
enddo |
1066 |
> |
endif |
1067 |
|
|
1068 |
< |
if (do_stress) call add_stress_tensor(d_grp, fij) |
1068 |
> |
if (do_stress) call add_stress_tensor(d_grp, fij) |
1069 |
> |
endif |
1070 |
|
endif |
1071 |
< |
end if |
1071 |
> |
endif |
1072 |
|
enddo |
1073 |
+ |
|
1074 |
|
enddo outer |
1075 |
|
|
1076 |
|
if (update_nlist) then |
1130 |
|
|
1131 |
|
if (do_pot) then |
1132 |
|
! scatter/gather pot_row into the members of my column |
1133 |
< |
call scatter(pot_Row, pot_Temp, plan_atom_row) |
1134 |
< |
|
1133 |
> |
do i = 1,LR_POT_TYPES |
1134 |
> |
call scatter(pot_Row(i,:), pot_Temp(i,:), plan_atom_row) |
1135 |
> |
end do |
1136 |
|
! scatter/gather pot_local into all other procs |
1137 |
|
! add resultant to get total pot |
1138 |
|
do i = 1, nlocal |
1139 |
< |
pot_local = pot_local + pot_Temp(i) |
1139 |
> |
pot_local(1:LR_POT_TYPES) = pot_local(1:LR_POT_TYPES) & |
1140 |
> |
+ pot_Temp(1:LR_POT_TYPES,i) |
1141 |
|
enddo |
1142 |
|
|
1143 |
|
pot_Temp = 0.0_DP |
1144 |
< |
|
1145 |
< |
call scatter(pot_Col, pot_Temp, plan_atom_col) |
1144 |
> |
do i = 1,LR_POT_TYPES |
1145 |
> |
call scatter(pot_Col(i,:), pot_Temp(i,:), plan_atom_col) |
1146 |
> |
end do |
1147 |
|
do i = 1, nlocal |
1148 |
< |
pot_local = pot_local + pot_Temp(i) |
1148 |
> |
pot_local(1:LR_POT_TYPES) = pot_local(1:LR_POT_TYPES)& |
1149 |
> |
+ pot_Temp(1:LR_POT_TYPES,i) |
1150 |
|
enddo |
1151 |
|
|
1152 |
|
endif |
1153 |
|
#endif |
1154 |
|
|
1155 |
< |
if (FF_RequiresPostpairCalc() .and. SIM_requires_postpair_calc) then |
1155 |
> |
if (SIM_requires_postpair_calc) then |
1156 |
> |
do i = 1, nlocal |
1157 |
> |
|
1158 |
> |
! we loop only over the local atoms, so we don't need row and column |
1159 |
> |
! lookups for the types |
1160 |
> |
|
1161 |
> |
me_i = atid(i) |
1162 |
> |
|
1163 |
> |
! is the atom electrostatic? See if it would have an |
1164 |
> |
! electrostatic interaction with itself |
1165 |
> |
iHash = InteractionHash(me_i,me_i) |
1166 |
|
|
1167 |
< |
if (electrostaticSummationMethod == 3) then |
974 |
< |
|
1167 |
> |
if ( iand(iHash, ELECTROSTATIC_PAIR).ne.0 ) then |
1168 |
|
#ifdef IS_MPI |
1169 |
< |
call scatter(rf_Row,rf,plan_atom_row_3d) |
1170 |
< |
call scatter(rf_Col,rf_Temp,plan_atom_col_3d) |
978 |
< |
do i = 1,nlocal |
979 |
< |
rf(1:3,i) = rf(1:3,i) + rf_Temp(1:3,i) |
980 |
< |
end do |
981 |
< |
#endif |
982 |
< |
|
983 |
< |
do i = 1, nLocal |
984 |
< |
|
985 |
< |
rfpot = 0.0_DP |
986 |
< |
#ifdef IS_MPI |
987 |
< |
me_i = atid_row(i) |
1169 |
> |
call self_self(i, eFrame, pot_local(ELECTROSTATIC_POT), & |
1170 |
> |
t, do_pot) |
1171 |
|
#else |
1172 |
< |
me_i = atid(i) |
1172 |
> |
call self_self(i, eFrame, pot(ELECTROSTATIC_POT), & |
1173 |
> |
t, do_pot) |
1174 |
|
#endif |
1175 |
< |
iHash = InteractionHash(me_i,me_j) |
1175 |
> |
endif |
1176 |
> |
|
1177 |
> |
|
1178 |
> |
if (electrostaticSummationMethod.eq.REACTION_FIELD) then |
1179 |
|
|
1180 |
< |
if ( iand(iHash, ELECTROSTATIC_PAIR).ne.0 ) then |
1181 |
< |
|
1182 |
< |
mu_i = getDipoleMoment(me_i) |
1183 |
< |
|
1184 |
< |
!! The reaction field needs to include a self contribution |
1185 |
< |
!! to the field: |
1186 |
< |
call accumulate_self_rf(i, mu_i, eFrame) |
1187 |
< |
!! Get the reaction field contribution to the |
1188 |
< |
!! potential and torques: |
1189 |
< |
call reaction_field_final(i, mu_i, eFrame, rfpot, t, do_pot) |
1180 |
> |
! loop over the excludes to accumulate RF stuff we've |
1181 |
> |
! left out of the normal pair loop |
1182 |
> |
|
1183 |
> |
do i1 = 1, nSkipsForAtom(i) |
1184 |
> |
j = skipsForAtom(i, i1) |
1185 |
> |
|
1186 |
> |
! prevent overcounting of the skips |
1187 |
> |
if (i.lt.j) then |
1188 |
> |
call get_interatomic_vector(q(:,i), & |
1189 |
> |
q(:,j), d_atm, ratmsq) |
1190 |
> |
rVal = dsqrt(ratmsq) |
1191 |
> |
call get_switch(ratmsq, sw, dswdr, rVal, group_switch, & |
1192 |
> |
in_switching_region) |
1193 |
|
#ifdef IS_MPI |
1194 |
< |
pot_local = pot_local + rfpot |
1194 |
> |
call rf_self_excludes(i, j, sw, eFrame, d_atm, rVal, & |
1195 |
> |
vpair, pot_local(ELECTROSTATIC_POT), f, t, do_pot) |
1196 |
|
#else |
1197 |
< |
pot = pot + rfpot |
1198 |
< |
|
1197 |
> |
call rf_self_excludes(i, j, sw, eFrame, d_atm, rVal, & |
1198 |
> |
vpair, pot(ELECTROSTATIC_POT), f, t, do_pot) |
1199 |
|
#endif |
1200 |
< |
endif |
1201 |
< |
enddo |
1202 |
< |
endif |
1200 |
> |
endif |
1201 |
> |
enddo |
1202 |
> |
endif |
1203 |
> |
enddo |
1204 |
|
endif |
1205 |
< |
|
1014 |
< |
|
1205 |
> |
|
1206 |
|
#ifdef IS_MPI |
1207 |
< |
|
1207 |
> |
|
1208 |
|
if (do_pot) then |
1209 |
< |
pot = pot + pot_local |
1210 |
< |
!! we assume the c code will do the allreduce to get the total potential |
1020 |
< |
!! we could do it right here if we needed to... |
1209 |
> |
call mpi_allreduce(pot_local, pot, LR_POT_TYPES,mpi_double_precision,mpi_sum, & |
1210 |
> |
mpi_comm_world,mpi_err) |
1211 |
|
endif |
1212 |
< |
|
1212 |
> |
|
1213 |
|
if (do_stress) then |
1214 |
|
call mpi_allreduce(tau_Temp, tau, 9,mpi_double_precision,mpi_sum, & |
1215 |
|
mpi_comm_world,mpi_err) |
1216 |
|
call mpi_allreduce(virial_Temp, virial,1,mpi_double_precision,mpi_sum, & |
1217 |
|
mpi_comm_world,mpi_err) |
1218 |
|
endif |
1219 |
< |
|
1219 |
> |
|
1220 |
|
#else |
1221 |
< |
|
1221 |
> |
|
1222 |
|
if (do_stress) then |
1223 |
|
tau = tau_Temp |
1224 |
|
virial = virial_Temp |
1225 |
|
endif |
1226 |
< |
|
1226 |
> |
|
1227 |
|
#endif |
1228 |
< |
|
1228 |
> |
|
1229 |
|
end subroutine do_force_loop |
1230 |
|
|
1231 |
|
subroutine do_pair(i, j, rijsq, d, sw, do_pot, & |
1232 |
< |
eFrame, A, f, t, pot, vpair, fpair) |
1232 |
> |
eFrame, A, f, t, pot, vpair, fpair, d_grp, r_grp, rCut) |
1233 |
|
|
1234 |
< |
real( kind = dp ) :: pot, vpair, sw |
1234 |
> |
real( kind = dp ) :: vpair, sw |
1235 |
> |
real( kind = dp ), dimension(LR_POT_TYPES) :: pot |
1236 |
|
real( kind = dp ), dimension(3) :: fpair |
1237 |
|
real( kind = dp ), dimension(nLocal) :: mfact |
1238 |
|
real( kind = dp ), dimension(9,nLocal) :: eFrame |
1243 |
|
logical, intent(inout) :: do_pot |
1244 |
|
integer, intent(in) :: i, j |
1245 |
|
real ( kind = dp ), intent(inout) :: rijsq |
1246 |
< |
real ( kind = dp ) :: r |
1246 |
> |
real ( kind = dp ), intent(inout) :: r_grp |
1247 |
|
real ( kind = dp ), intent(inout) :: d(3) |
1248 |
+ |
real ( kind = dp ), intent(inout) :: d_grp(3) |
1249 |
+ |
real ( kind = dp ), intent(inout) :: rCut |
1250 |
+ |
real ( kind = dp ) :: r |
1251 |
|
integer :: me_i, me_j |
1252 |
|
|
1253 |
|
integer :: iHash |
1265 |
|
#endif |
1266 |
|
|
1267 |
|
iHash = InteractionHash(me_i, me_j) |
1268 |
< |
|
1268 |
> |
|
1269 |
|
if ( iand(iHash, LJ_PAIR).ne.0 ) then |
1270 |
< |
call do_lj_pair(i, j, d, r, rijsq, sw, vpair, fpair, pot, f, do_pot) |
1270 |
> |
call do_lj_pair(i, j, d, r, rijsq, rcut, sw, vpair, fpair, & |
1271 |
> |
pot(VDW_POT), f, do_pot) |
1272 |
|
endif |
1273 |
< |
|
1273 |
> |
|
1274 |
|
if ( iand(iHash, ELECTROSTATIC_PAIR).ne.0 ) then |
1275 |
< |
call doElectrostaticPair(i, j, d, r, rijsq, sw, vpair, fpair, & |
1276 |
< |
pot, eFrame, f, t, do_pot) |
1082 |
< |
|
1083 |
< |
if (electrostaticSummationMethod == 3) then |
1084 |
< |
|
1085 |
< |
! CHECK ME (RF needs to know about all electrostatic types) |
1086 |
< |
call accumulate_rf(i, j, r, eFrame, sw) |
1087 |
< |
call rf_correct_forces(i, j, d, r, eFrame, sw, f, fpair) |
1088 |
< |
endif |
1089 |
< |
|
1275 |
> |
call doElectrostaticPair(i, j, d, r, rijsq, rcut, sw, vpair, fpair, & |
1276 |
> |
pot(ELECTROSTATIC_POT), eFrame, f, t, do_pot) |
1277 |
|
endif |
1278 |
< |
|
1278 |
> |
|
1279 |
|
if ( iand(iHash, STICKY_PAIR).ne.0 ) then |
1280 |
|
call do_sticky_pair(i, j, d, r, rijsq, sw, vpair, fpair, & |
1281 |
< |
pot, A, f, t, do_pot) |
1281 |
> |
pot(HB_POT), A, f, t, do_pot) |
1282 |
|
endif |
1283 |
< |
|
1283 |
> |
|
1284 |
|
if ( iand(iHash, STICKYPOWER_PAIR).ne.0 ) then |
1285 |
|
call do_sticky_power_pair(i, j, d, r, rijsq, sw, vpair, fpair, & |
1286 |
< |
pot, A, f, t, do_pot) |
1286 |
> |
pot(HB_POT), A, f, t, do_pot) |
1287 |
|
endif |
1288 |
< |
|
1288 |
> |
|
1289 |
|
if ( iand(iHash, GAYBERNE_PAIR).ne.0 ) then |
1290 |
|
call do_gb_pair(i, j, d, r, rijsq, sw, vpair, fpair, & |
1291 |
< |
pot, A, f, t, do_pot) |
1291 |
> |
pot(VDW_POT), A, f, t, do_pot) |
1292 |
|
endif |
1293 |
|
|
1294 |
|
if ( iand(iHash, GAYBERNE_LJ).ne.0 ) then |
1295 |
< |
! call do_gblj_pair(i, j, d, r, rijsq, sw, vpair, fpair, & |
1296 |
< |
! pot, A, f, t, do_pot) |
1295 |
> |
call do_gb_lj_pair(i, j, d, r, rijsq, rcut, sw, vpair, fpair, & |
1296 |
> |
pot(VDW_POT), A, f, t, do_pot) |
1297 |
|
endif |
1298 |
< |
|
1298 |
> |
|
1299 |
|
if ( iand(iHash, EAM_PAIR).ne.0 ) then |
1300 |
< |
call do_eam_pair(i, j, d, r, rijsq, sw, vpair, fpair, pot, f, & |
1301 |
< |
do_pot) |
1300 |
> |
call do_eam_pair(i, j, d, r, rijsq, sw, vpair, fpair, & |
1301 |
> |
pot(METALLIC_POT), f, do_pot) |
1302 |
|
endif |
1303 |
< |
|
1303 |
> |
|
1304 |
|
if ( iand(iHash, SHAPE_PAIR).ne.0 ) then |
1305 |
|
call do_shape_pair(i, j, d, r, rijsq, sw, vpair, fpair, & |
1306 |
< |
pot, A, f, t, do_pot) |
1306 |
> |
pot(VDW_POT), A, f, t, do_pot) |
1307 |
|
endif |
1308 |
< |
|
1308 |
> |
|
1309 |
|
if ( iand(iHash, SHAPE_LJ).ne.0 ) then |
1310 |
|
call do_shape_pair(i, j, d, r, rijsq, sw, vpair, fpair, & |
1311 |
< |
pot, A, f, t, do_pot) |
1311 |
> |
pot(VDW_POT), A, f, t, do_pot) |
1312 |
|
endif |
1313 |
+ |
|
1314 |
+ |
if ( iand(iHash, SC_PAIR).ne.0 ) then |
1315 |
+ |
call do_SC_pair(i, j, d, r, rijsq, rcut, sw, vpair, fpair, & |
1316 |
+ |
pot(METALLIC_POT), f, do_pot) |
1317 |
+ |
endif |
1318 |
+ |
|
1319 |
|
|
1320 |
+ |
|
1321 |
|
end subroutine do_pair |
1322 |
|
|
1323 |
< |
subroutine do_prepair(i, j, rijsq, d, sw, rcijsq, dc, & |
1323 |
> |
subroutine do_prepair(i, j, rijsq, d, sw, rcijsq, dc, rCut, & |
1324 |
|
do_pot, do_stress, eFrame, A, f, t, pot) |
1325 |
|
|
1326 |
< |
real( kind = dp ) :: pot, sw |
1326 |
> |
real( kind = dp ) :: sw |
1327 |
> |
real( kind = dp ), dimension(LR_POT_TYPES) :: pot |
1328 |
|
real( kind = dp ), dimension(9,nLocal) :: eFrame |
1329 |
|
real (kind=dp), dimension(9,nLocal) :: A |
1330 |
|
real (kind=dp), dimension(3,nLocal) :: f |
1332 |
|
|
1333 |
|
logical, intent(inout) :: do_pot, do_stress |
1334 |
|
integer, intent(in) :: i, j |
1335 |
< |
real ( kind = dp ), intent(inout) :: rijsq, rcijsq |
1335 |
> |
real ( kind = dp ), intent(inout) :: rijsq, rcijsq, rCut |
1336 |
|
real ( kind = dp ) :: r, rc |
1337 |
|
real ( kind = dp ), intent(inout) :: d(3), dc(3) |
1338 |
|
|
1351 |
|
iHash = InteractionHash(me_i, me_j) |
1352 |
|
|
1353 |
|
if ( iand(iHash, EAM_PAIR).ne.0 ) then |
1354 |
< |
call calc_EAM_prepair_rho(i, j, d, r, rijsq ) |
1354 |
> |
call calc_EAM_prepair_rho(i, j, d, r, rijsq) |
1355 |
|
endif |
1356 |
+ |
|
1357 |
+ |
if ( iand(iHash, SC_PAIR).ne.0 ) then |
1358 |
+ |
call calc_SC_prepair_rho(i, j, d, r, rijsq, rcut ) |
1359 |
+ |
endif |
1360 |
|
|
1361 |
|
end subroutine do_prepair |
1362 |
|
|
1363 |
|
|
1364 |
|
subroutine do_preforce(nlocal,pot) |
1365 |
|
integer :: nlocal |
1366 |
< |
real( kind = dp ) :: pot |
1366 |
> |
real( kind = dp ),dimension(LR_POT_TYPES) :: pot |
1367 |
|
|
1368 |
|
if (FF_uses_EAM .and. SIM_uses_EAM) then |
1369 |
< |
call calc_EAM_preforce_Frho(nlocal,pot) |
1369 |
> |
call calc_EAM_preforce_Frho(nlocal,pot(METALLIC_POT)) |
1370 |
|
endif |
1371 |
+ |
if (FF_uses_SC .and. SIM_uses_SC) then |
1372 |
+ |
call calc_SC_preforce_Frho(nlocal,pot(METALLIC_POT)) |
1373 |
+ |
endif |
1374 |
|
|
1375 |
|
|
1376 |
|
end subroutine do_preforce |
1455 |
|
pot_Col = 0.0_dp |
1456 |
|
pot_Temp = 0.0_dp |
1457 |
|
|
1256 |
– |
rf_Row = 0.0_dp |
1257 |
– |
rf_Col = 0.0_dp |
1258 |
– |
rf_Temp = 0.0_dp |
1259 |
– |
|
1458 |
|
#endif |
1459 |
|
|
1460 |
|
if (FF_uses_EAM .and. SIM_uses_EAM) then |
1461 |
|
call clean_EAM() |
1462 |
|
endif |
1463 |
|
|
1266 |
– |
rf = 0.0_dp |
1464 |
|
tau_Temp = 0.0_dp |
1465 |
|
virial_Temp = 0.0_dp |
1466 |
|
end subroutine zero_work_arrays |
1554 |
|
|
1555 |
|
function FF_RequiresPrepairCalc() result(doesit) |
1556 |
|
logical :: doesit |
1557 |
< |
doesit = FF_uses_EAM |
1557 |
> |
doesit = FF_uses_EAM .or. FF_uses_SC & |
1558 |
> |
.or. FF_uses_MEAM |
1559 |
|
end function FF_RequiresPrepairCalc |
1560 |
|
|
1363 |
– |
function FF_RequiresPostpairCalc() result(doesit) |
1364 |
– |
logical :: doesit |
1365 |
– |
if (electrostaticSummationMethod == 3) doesit = .true. |
1366 |
– |
end function FF_RequiresPostpairCalc |
1367 |
– |
|
1561 |
|
#ifdef PROFILE |
1562 |
|
function getforcetime() result(totalforcetime) |
1563 |
|
real(kind=dp) :: totalforcetime |