45 |
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46 |
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!! @author Charles F. Vardeman II |
47 |
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!! @author Matthew Meineke |
48 |
< |
!! @version $Id: doForces.F90,v 1.43 2005-09-15 02:48:43 chuckv Exp $, $Date: 2005-09-15 02:48:43 $, $Name: not supported by cvs2svn $, $Revision: 1.43 $ |
48 |
> |
!! @version $Id: doForces.F90,v 1.86 2007-04-09 18:24:00 gezelter Exp $, $Date: 2007-04-09 18:24:00 $, $Name: not supported by cvs2svn $, $Revision: 1.86 $ |
49 |
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50 |
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51 |
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module doForces |
58 |
|
use lj |
59 |
|
use sticky |
60 |
|
use electrostatic_module |
61 |
< |
use reaction_field_module |
62 |
< |
use gb_pair |
61 |
> |
use gayberne |
62 |
|
use shapes |
63 |
|
use vector_class |
64 |
|
use eam |
65 |
+ |
use suttonchen |
66 |
|
use status |
67 |
|
#ifdef IS_MPI |
68 |
|
use mpiSimulation |
72 |
|
PRIVATE |
73 |
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|
74 |
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#define __FORTRAN90 |
75 |
– |
#include "UseTheForce/fSwitchingFunction.h" |
75 |
|
#include "UseTheForce/fCutoffPolicy.h" |
77 |
– |
#include "UseTheForce/fCoulombicCorrection.h" |
76 |
|
#include "UseTheForce/DarkSide/fInteractionMap.h" |
77 |
+ |
#include "UseTheForce/DarkSide/fElectrostaticSummationMethod.h" |
78 |
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|
80 |
– |
|
79 |
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INTEGER, PARAMETER:: PREPAIR_LOOP = 1 |
80 |
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INTEGER, PARAMETER:: PAIR_LOOP = 2 |
81 |
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|
84 |
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logical, save :: haveSaneForceField = .false. |
85 |
|
logical, save :: haveInteractionHash = .false. |
86 |
|
logical, save :: haveGtypeCutoffMap = .false. |
87 |
< |
logical, save :: haveRlist = .false. |
87 |
> |
logical, save :: haveDefaultCutoffs = .false. |
88 |
> |
logical, save :: haveSkinThickness = .false. |
89 |
> |
logical, save :: haveElectrostaticSummationMethod = .false. |
90 |
> |
logical, save :: haveCutoffPolicy = .false. |
91 |
> |
logical, save :: VisitCutoffsAfterComputing = .false. |
92 |
> |
logical, save :: do_box_dipole = .false. |
93 |
|
|
94 |
|
logical, save :: FF_uses_DirectionalAtoms |
95 |
|
logical, save :: FF_uses_Dipoles |
96 |
|
logical, save :: FF_uses_GayBerne |
97 |
|
logical, save :: FF_uses_EAM |
98 |
< |
logical, save :: FF_uses_RF |
98 |
> |
logical, save :: FF_uses_SC |
99 |
> |
logical, save :: FF_uses_MEAM |
100 |
> |
|
101 |
|
|
102 |
|
logical, save :: SIM_uses_DirectionalAtoms |
103 |
|
logical, save :: SIM_uses_EAM |
104 |
< |
logical, save :: SIM_uses_RF |
104 |
> |
logical, save :: SIM_uses_SC |
105 |
> |
logical, save :: SIM_uses_MEAM |
106 |
|
logical, save :: SIM_requires_postpair_calc |
107 |
|
logical, save :: SIM_requires_prepair_calc |
108 |
|
logical, save :: SIM_uses_PBC |
109 |
+ |
logical, save :: SIM_uses_AtomicVirial |
110 |
|
|
111 |
< |
integer, save :: corrMethod |
111 |
> |
integer, save :: electrostaticSummationMethod |
112 |
> |
integer, save :: cutoffPolicy = TRADITIONAL_CUTOFF_POLICY |
113 |
|
|
114 |
+ |
real(kind=dp), save :: defaultRcut, defaultRsw, largestRcut |
115 |
+ |
real(kind=dp), save :: skinThickness |
116 |
+ |
logical, save :: defaultDoShift |
117 |
+ |
|
118 |
|
public :: init_FF |
119 |
< |
public :: setDefaultCutoffs |
119 |
> |
public :: setCutoffs |
120 |
> |
public :: cWasLame |
121 |
> |
public :: setElectrostaticMethod |
122 |
> |
public :: setBoxDipole |
123 |
> |
public :: getBoxDipole |
124 |
> |
public :: setCutoffPolicy |
125 |
> |
public :: setSkinThickness |
126 |
|
public :: do_force_loop |
109 |
– |
public :: createInteractionHash |
110 |
– |
public :: createGtypeCutoffMap |
111 |
– |
public :: getStickyCut |
112 |
– |
public :: getStickyPowerCut |
113 |
– |
public :: getGayBerneCut |
114 |
– |
public :: getEAMCut |
115 |
– |
public :: getShapeCut |
127 |
|
|
128 |
|
#ifdef PROFILE |
129 |
|
public :: getforcetime |
136 |
|
! Bit hash to determine pair-pair interactions. |
137 |
|
integer, dimension(:,:), allocatable :: InteractionHash |
138 |
|
real(kind=dp), dimension(:), allocatable :: atypeMaxCutoff |
139 |
< |
real(kind=dp), dimension(:), allocatable :: groupMaxCutoff |
140 |
< |
integer, dimension(:), allocatable :: groupToGtype |
141 |
< |
real(kind=dp), dimension(:), allocatable :: gtypeMaxCutoff |
139 |
> |
real(kind=dp), dimension(:), allocatable, target :: groupMaxCutoffRow |
140 |
> |
real(kind=dp), dimension(:), pointer :: groupMaxCutoffCol |
141 |
> |
|
142 |
> |
integer, dimension(:), allocatable, target :: groupToGtypeRow |
143 |
> |
integer, dimension(:), pointer :: groupToGtypeCol => null() |
144 |
> |
|
145 |
> |
real(kind=dp), dimension(:), allocatable,target :: gtypeMaxCutoffRow |
146 |
> |
real(kind=dp), dimension(:), pointer :: gtypeMaxCutoffCol |
147 |
|
type ::gtypeCutoffs |
148 |
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real(kind=dp) :: rcut |
149 |
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real(kind=dp) :: rcutsq |
151 |
|
end type gtypeCutoffs |
152 |
|
type(gtypeCutoffs), dimension(:,:), allocatable :: gtypeCutoffMap |
153 |
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|
154 |
< |
integer, save :: cutoffPolicy = TRADITIONAL_CUTOFF_POLICY |
155 |
< |
integer, save :: coulombicCorrection = NONE |
140 |
< |
real(kind=dp),save :: defaultRcut, defaultRsw, defaultRlist |
141 |
< |
real(kind=dp),save :: rcuti |
142 |
< |
|
154 |
> |
real(kind=dp), dimension(3) :: boxDipole |
155 |
> |
|
156 |
|
contains |
157 |
|
|
158 |
< |
subroutine createInteractionHash(status) |
158 |
> |
subroutine createInteractionHash() |
159 |
|
integer :: nAtypes |
147 |
– |
integer, intent(out) :: status |
160 |
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integer :: i |
161 |
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integer :: j |
162 |
|
integer :: iHash |
168 |
|
logical :: i_is_GB |
169 |
|
logical :: i_is_EAM |
170 |
|
logical :: i_is_Shape |
171 |
+ |
logical :: i_is_SC |
172 |
+ |
logical :: i_is_MEAM |
173 |
|
logical :: j_is_LJ |
174 |
|
logical :: j_is_Elect |
175 |
|
logical :: j_is_Sticky |
177 |
|
logical :: j_is_GB |
178 |
|
logical :: j_is_EAM |
179 |
|
logical :: j_is_Shape |
180 |
+ |
logical :: j_is_SC |
181 |
+ |
logical :: j_is_MEAM |
182 |
|
real(kind=dp) :: myRcut |
183 |
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|
168 |
– |
status = 0 |
169 |
– |
|
184 |
|
if (.not. associated(atypes)) then |
185 |
< |
call handleError("atype", "atypes was not present before call of createInteractionHash!") |
172 |
< |
status = -1 |
185 |
> |
call handleError("doForces", "atypes was not present before call of createInteractionHash!") |
186 |
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return |
187 |
|
endif |
188 |
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|
189 |
|
nAtypes = getSize(atypes) |
190 |
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|
191 |
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if (nAtypes == 0) then |
192 |
< |
status = -1 |
192 |
> |
call handleError("doForces", "nAtypes was zero during call of createInteractionHash!") |
193 |
|
return |
194 |
|
end if |
195 |
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|
196 |
|
if (.not. allocated(InteractionHash)) then |
197 |
|
allocate(InteractionHash(nAtypes,nAtypes)) |
198 |
+ |
else |
199 |
+ |
deallocate(InteractionHash) |
200 |
+ |
allocate(InteractionHash(nAtypes,nAtypes)) |
201 |
|
endif |
202 |
|
|
203 |
|
if (.not. allocated(atypeMaxCutoff)) then |
204 |
|
allocate(atypeMaxCutoff(nAtypes)) |
205 |
+ |
else |
206 |
+ |
deallocate(atypeMaxCutoff) |
207 |
+ |
allocate(atypeMaxCutoff(nAtypes)) |
208 |
|
endif |
209 |
|
|
210 |
|
do i = 1, nAtypes |
215 |
|
call getElementProperty(atypes, i, "is_GayBerne", i_is_GB) |
216 |
|
call getElementProperty(atypes, i, "is_EAM", i_is_EAM) |
217 |
|
call getElementProperty(atypes, i, "is_Shape", i_is_Shape) |
218 |
+ |
call getElementProperty(atypes, i, "is_SC", i_is_SC) |
219 |
+ |
call getElementProperty(atypes, i, "is_MEAM", i_is_MEAM) |
220 |
|
|
221 |
|
do j = i, nAtypes |
222 |
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|
230 |
|
call getElementProperty(atypes, j, "is_GayBerne", j_is_GB) |
231 |
|
call getElementProperty(atypes, j, "is_EAM", j_is_EAM) |
232 |
|
call getElementProperty(atypes, j, "is_Shape", j_is_Shape) |
233 |
+ |
call getElementProperty(atypes, j, "is_SC", j_is_SC) |
234 |
+ |
call getElementProperty(atypes, j, "is_MEAM", j_is_MEAM) |
235 |
|
|
236 |
|
if (i_is_LJ .and. j_is_LJ) then |
237 |
|
iHash = ior(iHash, LJ_PAIR) |
253 |
|
iHash = ior(iHash, EAM_PAIR) |
254 |
|
endif |
255 |
|
|
256 |
+ |
if (i_is_SC .and. j_is_SC) then |
257 |
+ |
iHash = ior(iHash, SC_PAIR) |
258 |
+ |
endif |
259 |
+ |
|
260 |
|
if (i_is_GB .and. j_is_GB) iHash = ior(iHash, GAYBERNE_PAIR) |
261 |
|
if (i_is_GB .and. j_is_LJ) iHash = ior(iHash, GAYBERNE_LJ) |
262 |
|
if (i_is_LJ .and. j_is_GB) iHash = ior(iHash, GAYBERNE_LJ) |
276 |
|
haveInteractionHash = .true. |
277 |
|
end subroutine createInteractionHash |
278 |
|
|
279 |
< |
subroutine createGtypeCutoffMap(stat) |
279 |
> |
subroutine createGtypeCutoffMap() |
280 |
|
|
254 |
– |
integer, intent(out), optional :: stat |
281 |
|
logical :: i_is_LJ |
282 |
|
logical :: i_is_Elect |
283 |
|
logical :: i_is_Sticky |
285 |
|
logical :: i_is_GB |
286 |
|
logical :: i_is_EAM |
287 |
|
logical :: i_is_Shape |
288 |
+ |
logical :: i_is_SC |
289 |
|
logical :: GtypeFound |
290 |
|
|
291 |
|
integer :: myStatus, nAtypes, i, j, istart, iend, jstart, jend |
292 |
< |
integer :: n_in_i, me_i, ia, g, atom1, nGroupTypes |
292 |
> |
integer :: n_in_i, me_i, ia, g, atom1, ja, n_in_j,me_j |
293 |
|
integer :: nGroupsInRow |
294 |
< |
real(kind=dp):: thisSigma, bigSigma, thisRcut, tol, skin |
294 |
> |
integer :: nGroupsInCol |
295 |
> |
integer :: nGroupTypesRow,nGroupTypesCol |
296 |
> |
real(kind=dp):: thisSigma, bigSigma, thisRcut, tradRcut, tol |
297 |
|
real(kind=dp) :: biggestAtypeCutoff |
298 |
|
|
270 |
– |
stat = 0 |
299 |
|
if (.not. haveInteractionHash) then |
300 |
< |
call createInteractionHash(myStatus) |
273 |
< |
if (myStatus .ne. 0) then |
274 |
< |
write(default_error, *) 'createInteractionHash failed in doForces!' |
275 |
< |
stat = -1 |
276 |
< |
return |
277 |
< |
endif |
300 |
> |
call createInteractionHash() |
301 |
|
endif |
302 |
|
#ifdef IS_MPI |
303 |
|
nGroupsInRow = getNgroupsInRow(plan_group_row) |
304 |
+ |
nGroupsInCol = getNgroupsInCol(plan_group_col) |
305 |
|
#endif |
306 |
|
nAtypes = getSize(atypes) |
307 |
|
! Set all of the initial cutoffs to zero. |
315 |
|
call getElementProperty(atypes, i, "is_GayBerne", i_is_GB) |
316 |
|
call getElementProperty(atypes, i, "is_EAM", i_is_EAM) |
317 |
|
call getElementProperty(atypes, i, "is_Shape", i_is_Shape) |
318 |
< |
|
318 |
> |
call getElementProperty(atypes, i, "is_SC", i_is_SC) |
319 |
|
|
320 |
< |
if (i_is_LJ) then |
321 |
< |
thisRcut = getSigma(i) * 2.5_dp |
322 |
< |
if (thisRCut .gt. atypeMaxCutoff(i)) atypeMaxCutoff(i) = thisRCut |
323 |
< |
endif |
324 |
< |
if (i_is_Elect) then |
325 |
< |
thisRcut = defaultRcut |
326 |
< |
if (thisRCut .gt. atypeMaxCutoff(i)) atypeMaxCutoff(i) = thisRCut |
327 |
< |
endif |
328 |
< |
if (i_is_Sticky) then |
329 |
< |
thisRcut = getStickyCut(i) |
330 |
< |
if (thisRCut .gt. atypeMaxCutoff(i)) atypeMaxCutoff(i) = thisRCut |
331 |
< |
endif |
332 |
< |
if (i_is_StickyP) then |
333 |
< |
thisRcut = getStickyPowerCut(i) |
334 |
< |
if (thisRCut .gt. atypeMaxCutoff(i)) atypeMaxCutoff(i) = thisRCut |
335 |
< |
endif |
336 |
< |
if (i_is_GB) then |
337 |
< |
thisRcut = getGayBerneCut(i) |
338 |
< |
if (thisRCut .gt. atypeMaxCutoff(i)) atypeMaxCutoff(i) = thisRCut |
339 |
< |
endif |
340 |
< |
if (i_is_EAM) then |
341 |
< |
thisRcut = getEAMCut(i) |
342 |
< |
if (thisRCut .gt. atypeMaxCutoff(i)) atypeMaxCutoff(i) = thisRCut |
343 |
< |
endif |
344 |
< |
if (i_is_Shape) then |
345 |
< |
thisRcut = getShapeCut(i) |
346 |
< |
if (thisRCut .gt. atypeMaxCutoff(i)) atypeMaxCutoff(i) = thisRCut |
320 |
> |
if (haveDefaultCutoffs) then |
321 |
> |
atypeMaxCutoff(i) = defaultRcut |
322 |
> |
else |
323 |
> |
if (i_is_LJ) then |
324 |
> |
thisRcut = getSigma(i) * 2.5_dp |
325 |
> |
if (thisRCut .gt. atypeMaxCutoff(i)) atypeMaxCutoff(i) = thisRCut |
326 |
> |
endif |
327 |
> |
if (i_is_Elect) then |
328 |
> |
thisRcut = defaultRcut |
329 |
> |
if (thisRCut .gt. atypeMaxCutoff(i)) atypeMaxCutoff(i) = thisRCut |
330 |
> |
endif |
331 |
> |
if (i_is_Sticky) then |
332 |
> |
thisRcut = getStickyCut(i) |
333 |
> |
if (thisRCut .gt. atypeMaxCutoff(i)) atypeMaxCutoff(i) = thisRCut |
334 |
> |
endif |
335 |
> |
if (i_is_StickyP) then |
336 |
> |
thisRcut = getStickyPowerCut(i) |
337 |
> |
if (thisRCut .gt. atypeMaxCutoff(i)) atypeMaxCutoff(i) = thisRCut |
338 |
> |
endif |
339 |
> |
if (i_is_GB) then |
340 |
> |
thisRcut = getGayBerneCut(i) |
341 |
> |
if (thisRCut .gt. atypeMaxCutoff(i)) atypeMaxCutoff(i) = thisRCut |
342 |
> |
endif |
343 |
> |
if (i_is_EAM) then |
344 |
> |
thisRcut = getEAMCut(i) |
345 |
> |
if (thisRCut .gt. atypeMaxCutoff(i)) atypeMaxCutoff(i) = thisRCut |
346 |
> |
endif |
347 |
> |
if (i_is_Shape) then |
348 |
> |
thisRcut = getShapeCut(i) |
349 |
> |
if (thisRCut .gt. atypeMaxCutoff(i)) atypeMaxCutoff(i) = thisRCut |
350 |
> |
endif |
351 |
> |
if (i_is_SC) then |
352 |
> |
thisRcut = getSCCut(i) |
353 |
> |
if (thisRCut .gt. atypeMaxCutoff(i)) atypeMaxCutoff(i) = thisRCut |
354 |
> |
endif |
355 |
|
endif |
356 |
< |
|
356 |
> |
|
357 |
|
if (atypeMaxCutoff(i).gt.biggestAtypeCutoff) then |
358 |
|
biggestAtypeCutoff = atypeMaxCutoff(i) |
359 |
|
endif |
360 |
+ |
|
361 |
|
endif |
362 |
|
enddo |
330 |
– |
|
331 |
– |
nGroupTypes = 0 |
363 |
|
|
364 |
|
istart = 1 |
365 |
+ |
jstart = 1 |
366 |
|
#ifdef IS_MPI |
367 |
|
iend = nGroupsInRow |
368 |
+ |
jend = nGroupsInCol |
369 |
|
#else |
370 |
|
iend = nGroups |
371 |
+ |
jend = nGroups |
372 |
|
#endif |
373 |
|
|
374 |
|
!! allocate the groupToGtype and gtypeMaxCutoff here. |
375 |
< |
if(.not.allocated(groupToGtype)) then |
376 |
< |
allocate(groupToGtype(iend)) |
377 |
< |
allocate(groupMaxCutoff(iend)) |
378 |
< |
allocate(gtypeMaxCutoff(iend)) |
379 |
< |
groupMaxCutoff = 0.0_dp |
380 |
< |
gtypeMaxCutoff = 0.0_dp |
375 |
> |
if(.not.allocated(groupToGtypeRow)) then |
376 |
> |
! allocate(groupToGtype(iend)) |
377 |
> |
allocate(groupToGtypeRow(iend)) |
378 |
> |
else |
379 |
> |
deallocate(groupToGtypeRow) |
380 |
> |
allocate(groupToGtypeRow(iend)) |
381 |
|
endif |
382 |
+ |
if(.not.allocated(groupMaxCutoffRow)) then |
383 |
+ |
allocate(groupMaxCutoffRow(iend)) |
384 |
+ |
else |
385 |
+ |
deallocate(groupMaxCutoffRow) |
386 |
+ |
allocate(groupMaxCutoffRow(iend)) |
387 |
+ |
end if |
388 |
+ |
|
389 |
+ |
if(.not.allocated(gtypeMaxCutoffRow)) then |
390 |
+ |
allocate(gtypeMaxCutoffRow(iend)) |
391 |
+ |
else |
392 |
+ |
deallocate(gtypeMaxCutoffRow) |
393 |
+ |
allocate(gtypeMaxCutoffRow(iend)) |
394 |
+ |
endif |
395 |
+ |
|
396 |
+ |
|
397 |
+ |
#ifdef IS_MPI |
398 |
+ |
! We only allocate new storage if we are in MPI because Ncol /= Nrow |
399 |
+ |
if(.not.associated(groupToGtypeCol)) then |
400 |
+ |
allocate(groupToGtypeCol(jend)) |
401 |
+ |
else |
402 |
+ |
deallocate(groupToGtypeCol) |
403 |
+ |
allocate(groupToGtypeCol(jend)) |
404 |
+ |
end if |
405 |
+ |
|
406 |
+ |
if(.not.associated(groupMaxCutoffCol)) then |
407 |
+ |
allocate(groupMaxCutoffCol(jend)) |
408 |
+ |
else |
409 |
+ |
deallocate(groupMaxCutoffCol) |
410 |
+ |
allocate(groupMaxCutoffCol(jend)) |
411 |
+ |
end if |
412 |
+ |
if(.not.associated(gtypeMaxCutoffCol)) then |
413 |
+ |
allocate(gtypeMaxCutoffCol(jend)) |
414 |
+ |
else |
415 |
+ |
deallocate(gtypeMaxCutoffCol) |
416 |
+ |
allocate(gtypeMaxCutoffCol(jend)) |
417 |
+ |
end if |
418 |
+ |
|
419 |
+ |
groupMaxCutoffCol = 0.0_dp |
420 |
+ |
gtypeMaxCutoffCol = 0.0_dp |
421 |
+ |
|
422 |
+ |
#endif |
423 |
+ |
groupMaxCutoffRow = 0.0_dp |
424 |
+ |
gtypeMaxCutoffRow = 0.0_dp |
425 |
+ |
|
426 |
+ |
|
427 |
|
!! first we do a single loop over the cutoff groups to find the |
428 |
|
!! largest cutoff for any atypes present in this group. We also |
429 |
|
!! create gtypes at this point. |
430 |
|
|
431 |
< |
tol = 1.0d-6 |
432 |
< |
|
431 |
> |
tol = 1.0e-6_dp |
432 |
> |
nGroupTypesRow = 0 |
433 |
> |
nGroupTypesCol = 0 |
434 |
|
do i = istart, iend |
435 |
|
n_in_i = groupStartRow(i+1) - groupStartRow(i) |
436 |
< |
groupMaxCutoff(i) = 0.0_dp |
436 |
> |
groupMaxCutoffRow(i) = 0.0_dp |
437 |
|
do ia = groupStartRow(i), groupStartRow(i+1)-1 |
438 |
|
atom1 = groupListRow(ia) |
439 |
|
#ifdef IS_MPI |
441 |
|
#else |
442 |
|
me_i = atid(atom1) |
443 |
|
#endif |
444 |
< |
if (atypeMaxCutoff(me_i).gt.groupMaxCutoff(i)) then |
445 |
< |
groupMaxCutoff(i)=atypeMaxCutoff(me_i) |
444 |
> |
if (atypeMaxCutoff(me_i).gt.groupMaxCutoffRow(i)) then |
445 |
> |
groupMaxCutoffRow(i)=atypeMaxCutoff(me_i) |
446 |
|
endif |
447 |
|
enddo |
448 |
+ |
if (nGroupTypesRow.eq.0) then |
449 |
+ |
nGroupTypesRow = nGroupTypesRow + 1 |
450 |
+ |
gtypeMaxCutoffRow(nGroupTypesRow) = groupMaxCutoffRow(i) |
451 |
+ |
groupToGtypeRow(i) = nGroupTypesRow |
452 |
+ |
else |
453 |
+ |
GtypeFound = .false. |
454 |
+ |
do g = 1, nGroupTypesRow |
455 |
+ |
if ( abs(groupMaxCutoffRow(i) - gtypeMaxCutoffRow(g)).lt.tol) then |
456 |
+ |
groupToGtypeRow(i) = g |
457 |
+ |
GtypeFound = .true. |
458 |
+ |
endif |
459 |
+ |
enddo |
460 |
+ |
if (.not.GtypeFound) then |
461 |
+ |
nGroupTypesRow = nGroupTypesRow + 1 |
462 |
+ |
gtypeMaxCutoffRow(nGroupTypesRow) = groupMaxCutoffRow(i) |
463 |
+ |
groupToGtypeRow(i) = nGroupTypesRow |
464 |
+ |
endif |
465 |
+ |
endif |
466 |
+ |
enddo |
467 |
|
|
468 |
< |
if (nGroupTypes.eq.0) then |
469 |
< |
nGroupTypes = nGroupTypes + 1 |
470 |
< |
gtypeMaxCutoff(nGroupTypes) = groupMaxCutoff(i) |
471 |
< |
groupToGtype(i) = nGroupTypes |
468 |
> |
#ifdef IS_MPI |
469 |
> |
do j = jstart, jend |
470 |
> |
n_in_j = groupStartCol(j+1) - groupStartCol(j) |
471 |
> |
groupMaxCutoffCol(j) = 0.0_dp |
472 |
> |
do ja = groupStartCol(j), groupStartCol(j+1)-1 |
473 |
> |
atom1 = groupListCol(ja) |
474 |
> |
|
475 |
> |
me_j = atid_col(atom1) |
476 |
> |
|
477 |
> |
if (atypeMaxCutoff(me_j).gt.groupMaxCutoffCol(j)) then |
478 |
> |
groupMaxCutoffCol(j)=atypeMaxCutoff(me_j) |
479 |
> |
endif |
480 |
> |
enddo |
481 |
> |
|
482 |
> |
if (nGroupTypesCol.eq.0) then |
483 |
> |
nGroupTypesCol = nGroupTypesCol + 1 |
484 |
> |
gtypeMaxCutoffCol(nGroupTypesCol) = groupMaxCutoffCol(j) |
485 |
> |
groupToGtypeCol(j) = nGroupTypesCol |
486 |
|
else |
487 |
|
GtypeFound = .false. |
488 |
< |
do g = 1, nGroupTypes |
489 |
< |
if ( abs(groupMaxCutoff(i) - gtypeMaxCutoff(g)).lt.tol) then |
490 |
< |
groupToGtype(i) = g |
488 |
> |
do g = 1, nGroupTypesCol |
489 |
> |
if ( abs(groupMaxCutoffCol(j) - gtypeMaxCutoffCol(g)).lt.tol) then |
490 |
> |
groupToGtypeCol(j) = g |
491 |
|
GtypeFound = .true. |
492 |
|
endif |
493 |
|
enddo |
494 |
|
if (.not.GtypeFound) then |
495 |
< |
nGroupTypes = nGroupTypes + 1 |
496 |
< |
gtypeMaxCutoff(nGroupTypes) = groupMaxCutoff(i) |
497 |
< |
groupToGtype(i) = nGroupTypes |
495 |
> |
nGroupTypesCol = nGroupTypesCol + 1 |
496 |
> |
gtypeMaxCutoffCol(nGroupTypesCol) = groupMaxCutoffCol(j) |
497 |
> |
groupToGtypeCol(j) = nGroupTypesCol |
498 |
|
endif |
499 |
|
endif |
500 |
|
enddo |
501 |
|
|
502 |
+ |
#else |
503 |
+ |
! Set pointers to information we just found |
504 |
+ |
nGroupTypesCol = nGroupTypesRow |
505 |
+ |
groupToGtypeCol => groupToGtypeRow |
506 |
+ |
gtypeMaxCutoffCol => gtypeMaxCutoffRow |
507 |
+ |
groupMaxCutoffCol => groupMaxCutoffRow |
508 |
+ |
#endif |
509 |
+ |
|
510 |
|
!! allocate the gtypeCutoffMap here. |
511 |
< |
allocate(gtypeCutoffMap(nGroupTypes,nGroupTypes)) |
511 |
> |
allocate(gtypeCutoffMap(nGroupTypesRow,nGroupTypesCol)) |
512 |
|
!! then we do a double loop over all the group TYPES to find the cutoff |
513 |
|
!! map between groups of two types |
514 |
< |
|
515 |
< |
do i = 1, nGroupTypes |
516 |
< |
do j = 1, nGroupTypes |
514 |
> |
tradRcut = max(maxval(gtypeMaxCutoffRow),maxval(gtypeMaxCutoffCol)) |
515 |
> |
|
516 |
> |
do i = 1, nGroupTypesRow |
517 |
> |
do j = 1, nGroupTypesCol |
518 |
|
|
519 |
|
select case(cutoffPolicy) |
520 |
|
case(TRADITIONAL_CUTOFF_POLICY) |
521 |
< |
thisRcut = maxval(gtypeMaxCutoff) |
521 |
> |
thisRcut = tradRcut |
522 |
|
case(MIX_CUTOFF_POLICY) |
523 |
< |
thisRcut = 0.5_dp * (gtypeMaxCutoff(i) + gtypeMaxCutoff(j)) |
523 |
> |
thisRcut = 0.5_dp * (gtypeMaxCutoffRow(i) + gtypeMaxCutoffCol(j)) |
524 |
|
case(MAX_CUTOFF_POLICY) |
525 |
< |
thisRcut = max(gtypeMaxCutoff(i), gtypeMaxCutoff(j)) |
525 |
> |
thisRcut = max(gtypeMaxCutoffRow(i), gtypeMaxCutoffCol(j)) |
526 |
|
case default |
527 |
|
call handleError("createGtypeCutoffMap", "Unknown Cutoff Policy") |
528 |
|
return |
529 |
|
end select |
530 |
|
gtypeCutoffMap(i,j)%rcut = thisRcut |
531 |
< |
gtypeCutoffMap(i,j)%rcutsq = thisRcut*thisRcut |
532 |
< |
skin = defaultRlist - defaultRcut |
411 |
< |
gtypeCutoffMap(i,j)%rlistsq = (thisRcut + skin)**2 |
531 |
> |
|
532 |
> |
if (thisRcut.gt.largestRcut) largestRcut = thisRcut |
533 |
|
|
534 |
+ |
gtypeCutoffMap(i,j)%rcutsq = thisRcut*thisRcut |
535 |
+ |
|
536 |
+ |
if (.not.haveSkinThickness) then |
537 |
+ |
skinThickness = 1.0_dp |
538 |
+ |
endif |
539 |
+ |
|
540 |
+ |
gtypeCutoffMap(i,j)%rlistsq = (thisRcut + skinThickness)**2 |
541 |
+ |
|
542 |
+ |
! sanity check |
543 |
+ |
|
544 |
+ |
if (haveDefaultCutoffs) then |
545 |
+ |
if (abs(gtypeCutoffMap(i,j)%rcut - defaultRcut).gt.0.0001) then |
546 |
+ |
call handleError("createGtypeCutoffMap", "user-specified rCut does not match computed group Cutoff") |
547 |
+ |
endif |
548 |
+ |
endif |
549 |
|
enddo |
550 |
|
enddo |
551 |
+ |
|
552 |
+ |
if(allocated(gtypeMaxCutoffRow)) deallocate(gtypeMaxCutoffRow) |
553 |
+ |
if(allocated(groupMaxCutoffRow)) deallocate(groupMaxCutoffRow) |
554 |
+ |
if(allocated(atypeMaxCutoff)) deallocate(atypeMaxCutoff) |
555 |
+ |
#ifdef IS_MPI |
556 |
+ |
if(associated(groupMaxCutoffCol)) deallocate(groupMaxCutoffCol) |
557 |
+ |
if(associated(gtypeMaxCutoffCol)) deallocate(gtypeMaxCutoffCol) |
558 |
+ |
#endif |
559 |
+ |
groupMaxCutoffCol => null() |
560 |
+ |
gtypeMaxCutoffCol => null() |
561 |
|
|
562 |
|
haveGtypeCutoffMap = .true. |
563 |
|
end subroutine createGtypeCutoffMap |
564 |
|
|
565 |
< |
subroutine setDefaultCutoffs(defRcut, defRsw, defRlist, cutPolicy) |
420 |
< |
real(kind=dp),intent(in) :: defRcut, defRsw, defRlist |
421 |
< |
integer, intent(in) :: cutPolicy |
565 |
> |
subroutine setCutoffs(defRcut, defRsw) |
566 |
|
|
567 |
+ |
real(kind=dp),intent(in) :: defRcut, defRsw |
568 |
+ |
character(len = statusMsgSize) :: errMsg |
569 |
+ |
integer :: localError |
570 |
+ |
|
571 |
|
defaultRcut = defRcut |
572 |
|
defaultRsw = defRsw |
573 |
< |
defaultRlist = defRlist |
574 |
< |
cutoffPolicy = cutPolicy |
575 |
< |
rcuti = 1.0_dp / defaultRcut |
576 |
< |
end subroutine setDefaultCutoffs |
573 |
> |
|
574 |
> |
defaultDoShift = .false. |
575 |
> |
if (abs(defaultRcut-defaultRsw) .lt. 0.0001) then |
576 |
> |
|
577 |
> |
write(errMsg, *) & |
578 |
> |
'cutoffRadius and switchingRadius are set to the same', newline & |
579 |
> |
// tab, 'value. OOPSE will use shifted force van der Waals', newline & |
580 |
> |
// tab, 'potentials instead of switching functions.' |
581 |
> |
|
582 |
> |
call handleInfo("setCutoffs", errMsg) |
583 |
> |
|
584 |
> |
defaultDoShift = .true. |
585 |
> |
|
586 |
> |
endif |
587 |
> |
|
588 |
> |
localError = 0 |
589 |
> |
call setLJDefaultCutoff( defaultRcut, defaultDoShift ) |
590 |
> |
call setElectrostaticCutoffRadius( defaultRcut, defaultRsw ) |
591 |
> |
call setCutoffEAM( defaultRcut ) |
592 |
> |
call setCutoffSC( defaultRcut ) |
593 |
> |
call set_switch(defaultRsw, defaultRcut) |
594 |
> |
call setHmatDangerousRcutValue(defaultRcut) |
595 |
> |
|
596 |
> |
haveDefaultCutoffs = .true. |
597 |
> |
haveGtypeCutoffMap = .false. |
598 |
|
|
599 |
< |
subroutine setCutoffPolicy(cutPolicy) |
599 |
> |
end subroutine setCutoffs |
600 |
|
|
601 |
+ |
subroutine cWasLame() |
602 |
+ |
|
603 |
+ |
VisitCutoffsAfterComputing = .true. |
604 |
+ |
return |
605 |
+ |
|
606 |
+ |
end subroutine cWasLame |
607 |
+ |
|
608 |
+ |
subroutine setCutoffPolicy(cutPolicy) |
609 |
+ |
|
610 |
|
integer, intent(in) :: cutPolicy |
611 |
+ |
|
612 |
|
cutoffPolicy = cutPolicy |
613 |
< |
call createGtypeCutoffMap() |
613 |
> |
haveCutoffPolicy = .true. |
614 |
> |
haveGtypeCutoffMap = .false. |
615 |
> |
|
616 |
|
end subroutine setCutoffPolicy |
436 |
– |
|
617 |
|
|
618 |
< |
subroutine setSimVariables() |
439 |
< |
SIM_uses_DirectionalAtoms = SimUsesDirectionalAtoms() |
440 |
< |
SIM_uses_EAM = SimUsesEAM() |
441 |
< |
SIM_requires_postpair_calc = SimRequiresPostpairCalc() |
442 |
< |
SIM_requires_prepair_calc = SimRequiresPrepairCalc() |
443 |
< |
SIM_uses_PBC = SimUsesPBC() |
444 |
< |
SIM_uses_RF = SimUsesRF() |
618 |
> |
subroutine setBoxDipole() |
619 |
|
|
620 |
< |
haveSIMvariables = .true. |
620 |
> |
do_box_dipole = .true. |
621 |
> |
|
622 |
> |
end subroutine setBoxDipole |
623 |
|
|
624 |
< |
return |
449 |
< |
end subroutine setSimVariables |
624 |
> |
subroutine getBoxDipole( box_dipole ) |
625 |
|
|
626 |
+ |
real(kind=dp), intent(inout), dimension(3) :: box_dipole |
627 |
+ |
|
628 |
+ |
box_dipole = boxDipole |
629 |
+ |
|
630 |
+ |
end subroutine getBoxDipole |
631 |
+ |
|
632 |
+ |
subroutine setElectrostaticMethod( thisESM ) |
633 |
+ |
|
634 |
+ |
integer, intent(in) :: thisESM |
635 |
+ |
|
636 |
+ |
electrostaticSummationMethod = thisESM |
637 |
+ |
haveElectrostaticSummationMethod = .true. |
638 |
+ |
|
639 |
+ |
end subroutine setElectrostaticMethod |
640 |
+ |
|
641 |
+ |
subroutine setSkinThickness( thisSkin ) |
642 |
+ |
|
643 |
+ |
real(kind=dp), intent(in) :: thisSkin |
644 |
+ |
|
645 |
+ |
skinThickness = thisSkin |
646 |
+ |
haveSkinThickness = .true. |
647 |
+ |
haveGtypeCutoffMap = .false. |
648 |
+ |
|
649 |
+ |
end subroutine setSkinThickness |
650 |
+ |
|
651 |
+ |
subroutine setSimVariables() |
652 |
+ |
SIM_uses_DirectionalAtoms = SimUsesDirectionalAtoms() |
653 |
+ |
SIM_uses_EAM = SimUsesEAM() |
654 |
+ |
SIM_requires_postpair_calc = SimRequiresPostpairCalc() |
655 |
+ |
SIM_requires_prepair_calc = SimRequiresPrepairCalc() |
656 |
+ |
SIM_uses_PBC = SimUsesPBC() |
657 |
+ |
SIM_uses_SC = SimUsesSC() |
658 |
+ |
SIM_uses_AtomicVirial = SimUsesAtomicVirial() |
659 |
+ |
|
660 |
+ |
haveSIMvariables = .true. |
661 |
+ |
|
662 |
+ |
return |
663 |
+ |
end subroutine setSimVariables |
664 |
+ |
|
665 |
|
subroutine doReadyCheck(error) |
666 |
|
integer, intent(out) :: error |
453 |
– |
|
667 |
|
integer :: myStatus |
668 |
|
|
669 |
|
error = 0 |
670 |
|
|
671 |
|
if (.not. haveInteractionHash) then |
672 |
< |
myStatus = 0 |
460 |
< |
call createInteractionHash(myStatus) |
461 |
< |
if (myStatus .ne. 0) then |
462 |
< |
write(default_error, *) 'createInteractionHash failed in doForces!' |
463 |
< |
error = -1 |
464 |
< |
return |
465 |
< |
endif |
672 |
> |
call createInteractionHash() |
673 |
|
endif |
674 |
|
|
675 |
|
if (.not. haveGtypeCutoffMap) then |
676 |
< |
myStatus = 0 |
470 |
< |
call createGtypeCutoffMap(myStatus) |
471 |
< |
if (myStatus .ne. 0) then |
472 |
< |
write(default_error, *) 'createGtypeCutoffMap failed in doForces!' |
473 |
< |
error = -1 |
474 |
< |
return |
475 |
< |
endif |
676 |
> |
call createGtypeCutoffMap() |
677 |
|
endif |
678 |
|
|
679 |
+ |
if (VisitCutoffsAfterComputing) then |
680 |
+ |
call set_switch(largestRcut, largestRcut) |
681 |
+ |
call setHmatDangerousRcutValue(largestRcut) |
682 |
+ |
call setCutoffEAM(largestRcut) |
683 |
+ |
call setCutoffSC(largestRcut) |
684 |
+ |
VisitCutoffsAfterComputing = .false. |
685 |
+ |
endif |
686 |
+ |
|
687 |
|
if (.not. haveSIMvariables) then |
688 |
|
call setSimVariables() |
689 |
|
endif |
481 |
– |
|
482 |
– |
! if (.not. haveRlist) then |
483 |
– |
! write(default_error, *) 'rList has not been set in doForces!' |
484 |
– |
! error = -1 |
485 |
– |
! return |
486 |
– |
! endif |
690 |
|
|
691 |
|
if (.not. haveNeighborList) then |
692 |
|
write(default_error, *) 'neighbor list has not been initialized in doForces!' |
693 |
|
error = -1 |
694 |
|
return |
695 |
|
end if |
696 |
< |
|
696 |
> |
|
697 |
|
if (.not. haveSaneForceField) then |
698 |
|
write(default_error, *) 'Force Field is not sane in doForces!' |
699 |
|
error = -1 |
700 |
|
return |
701 |
|
end if |
702 |
< |
|
702 |
> |
|
703 |
|
#ifdef IS_MPI |
704 |
|
if (.not. isMPISimSet()) then |
705 |
|
write(default_error,*) "ERROR: mpiSimulation has not been initialized!" |
711 |
|
end subroutine doReadyCheck |
712 |
|
|
713 |
|
|
714 |
< |
subroutine init_FF(use_RF, correctionMethod, dampingAlpha, thisStat) |
714 |
> |
subroutine init_FF(thisStat) |
715 |
|
|
513 |
– |
logical, intent(in) :: use_RF |
514 |
– |
integer, intent(in) :: correctionMethod |
515 |
– |
real(kind=dp), intent(in) :: dampingAlpha |
716 |
|
integer, intent(out) :: thisStat |
717 |
|
integer :: my_status, nMatches |
718 |
|
integer, pointer :: MatchList(:) => null() |
519 |
– |
real(kind=dp) :: rcut, rrf, rt, dielect |
719 |
|
|
720 |
|
!! assume things are copacetic, unless they aren't |
721 |
|
thisStat = 0 |
722 |
|
|
524 |
– |
!! Fortran's version of a cast: |
525 |
– |
FF_uses_RF = use_RF |
526 |
– |
|
527 |
– |
!! set the electrostatic correction method |
528 |
– |
select case(coulombicCorrection) |
529 |
– |
case(NONE) |
530 |
– |
corrMethod = 0 |
531 |
– |
case(UNDAMPED_WOLF) |
532 |
– |
corrMethod = 1 |
533 |
– |
case(WOLF) |
534 |
– |
corrMethod = 2 |
535 |
– |
case (REACTION_FIELD) |
536 |
– |
corrMethod = 3 |
537 |
– |
case default |
538 |
– |
call handleError("init_FF", "Unknown Coulombic Correction Method") |
539 |
– |
return |
540 |
– |
end select |
541 |
– |
|
723 |
|
!! init_FF is called *after* all of the atom types have been |
724 |
|
!! defined in atype_module using the new_atype subroutine. |
725 |
|
!! |
730 |
|
FF_uses_Dipoles = .false. |
731 |
|
FF_uses_GayBerne = .false. |
732 |
|
FF_uses_EAM = .false. |
733 |
+ |
FF_uses_SC = .false. |
734 |
|
|
735 |
|
call getMatchingElementList(atypes, "is_Directional", .true., & |
736 |
|
nMatches, MatchList) |
747 |
|
call getMatchingElementList(atypes, "is_EAM", .true., nMatches, MatchList) |
748 |
|
if (nMatches .gt. 0) FF_uses_EAM = .true. |
749 |
|
|
750 |
+ |
call getMatchingElementList(atypes, "is_SC", .true., nMatches, MatchList) |
751 |
+ |
if (nMatches .gt. 0) FF_uses_SC = .true. |
752 |
|
|
753 |
+ |
|
754 |
|
haveSaneForceField = .true. |
755 |
|
|
571 |
– |
!! check to make sure the FF_uses_RF setting makes sense |
572 |
– |
|
573 |
– |
if (FF_uses_Dipoles) then |
574 |
– |
if (FF_uses_RF) then |
575 |
– |
dielect = getDielect() |
576 |
– |
call initialize_rf(dielect) |
577 |
– |
endif |
578 |
– |
else |
579 |
– |
if ((corrMethod == 3) .or. FF_uses_RF) then |
580 |
– |
write(default_error,*) 'Using Reaction Field with no dipoles? Huh?' |
581 |
– |
thisStat = -1 |
582 |
– |
haveSaneForceField = .false. |
583 |
– |
return |
584 |
– |
endif |
585 |
– |
endif |
586 |
– |
|
756 |
|
if (FF_uses_EAM) then |
757 |
|
call init_EAM_FF(my_status) |
758 |
|
if (my_status /= 0) then |
763 |
|
end if |
764 |
|
endif |
765 |
|
|
597 |
– |
if (FF_uses_GayBerne) then |
598 |
– |
call check_gb_pair_FF(my_status) |
599 |
– |
if (my_status .ne. 0) then |
600 |
– |
thisStat = -1 |
601 |
– |
haveSaneForceField = .false. |
602 |
– |
return |
603 |
– |
endif |
604 |
– |
endif |
605 |
– |
|
766 |
|
if (.not. haveNeighborList) then |
767 |
|
!! Create neighbor lists |
768 |
|
call expandNeighborList(nLocal, my_status) |
796 |
|
|
797 |
|
!! Stress Tensor |
798 |
|
real( kind = dp), dimension(9) :: tau |
799 |
< |
real ( kind = dp ) :: pot |
799 |
> |
real ( kind = dp ),dimension(LR_POT_TYPES) :: pot |
800 |
|
logical ( kind = 2) :: do_pot_c, do_stress_c |
801 |
|
logical :: do_pot |
802 |
|
logical :: do_stress |
803 |
|
logical :: in_switching_region |
804 |
|
#ifdef IS_MPI |
805 |
< |
real( kind = DP ) :: pot_local |
805 |
> |
real( kind = DP ), dimension(LR_POT_TYPES) :: pot_local |
806 |
|
integer :: nAtomsInRow |
807 |
|
integer :: nAtomsInCol |
808 |
|
integer :: nprocs |
815 |
|
integer :: istart, iend |
816 |
|
integer :: ia, jb, atom1, atom2 |
817 |
|
integer :: nlist |
818 |
< |
real( kind = DP ) :: ratmsq, rgrpsq, rgrp, vpair, vij |
818 |
> |
real( kind = DP ) :: ratmsq, rgrpsq, rgrp, rag, vpair, vij |
819 |
|
real( kind = DP ) :: sw, dswdr, swderiv, mf |
820 |
< |
real(kind=dp),dimension(3) :: d_atm, d_grp, fpair, fij |
821 |
< |
real(kind=dp) :: rfpot, mu_i, virial |
820 |
> |
real( kind = DP ) :: rVal |
821 |
> |
real(kind=dp),dimension(3) :: d_atm, d_grp, fpair, fij, fg, dag |
822 |
> |
real(kind=dp) :: rfpot, mu_i |
823 |
> |
real(kind=dp):: rCut |
824 |
|
integer :: me_i, me_j, n_in_i, n_in_j |
825 |
|
logical :: is_dp_i |
826 |
|
integer :: neighborListSize |
829 |
|
integer :: propPack_i, propPack_j |
830 |
|
integer :: loopStart, loopEnd, loop |
831 |
|
integer :: iHash |
832 |
< |
real(kind=dp) :: listSkin = 1.0 |
832 |
> |
integer :: i1 |
833 |
> |
|
834 |
> |
!! the variables for the box dipole moment |
835 |
> |
#ifdef IS_MPI |
836 |
> |
integer :: pChgCount_local |
837 |
> |
integer :: nChgCount_local |
838 |
> |
real(kind=dp) :: pChg_local |
839 |
> |
real(kind=dp) :: nChg_local |
840 |
> |
real(kind=dp), dimension(3) :: pChgPos_local |
841 |
> |
real(kind=dp), dimension(3) :: nChgPos_local |
842 |
> |
real(kind=dp), dimension(3) :: dipVec_local |
843 |
> |
#endif |
844 |
> |
integer :: pChgCount |
845 |
> |
integer :: nChgCount |
846 |
> |
real(kind=dp) :: pChg |
847 |
> |
real(kind=dp) :: nChg |
848 |
> |
real(kind=dp) :: chg_value |
849 |
> |
real(kind=dp), dimension(3) :: pChgPos |
850 |
> |
real(kind=dp), dimension(3) :: nChgPos |
851 |
> |
real(kind=dp), dimension(3) :: dipVec |
852 |
> |
real(kind=dp), dimension(3) :: chgVec |
853 |
|
|
854 |
+ |
!! initialize box dipole variables |
855 |
+ |
if (do_box_dipole) then |
856 |
+ |
#ifdef IS_MPI |
857 |
+ |
pChg_local = 0.0_dp |
858 |
+ |
nChg_local = 0.0_dp |
859 |
+ |
pChgCount_local = 0 |
860 |
+ |
nChgCount_local = 0 |
861 |
+ |
do i=1, 3 |
862 |
+ |
pChgPos_local = 0.0_dp |
863 |
+ |
nChgPos_local = 0.0_dp |
864 |
+ |
dipVec_local = 0.0_dp |
865 |
+ |
enddo |
866 |
+ |
#endif |
867 |
+ |
pChg = 0.0_dp |
868 |
+ |
nChg = 0.0_dp |
869 |
+ |
pChgCount = 0 |
870 |
+ |
nChgCount = 0 |
871 |
+ |
chg_value = 0.0_dp |
872 |
+ |
|
873 |
+ |
do i=1, 3 |
874 |
+ |
pChgPos(i) = 0.0_dp |
875 |
+ |
nChgPos(i) = 0.0_dp |
876 |
+ |
dipVec(i) = 0.0_dp |
877 |
+ |
chgVec(i) = 0.0_dp |
878 |
+ |
boxDipole(i) = 0.0_dp |
879 |
+ |
enddo |
880 |
+ |
endif |
881 |
+ |
|
882 |
|
!! initialize local variables |
883 |
|
|
884 |
|
#ifdef IS_MPI |
941 |
|
! (but only on the first time through): |
942 |
|
if (loop .eq. loopStart) then |
943 |
|
#ifdef IS_MPI |
944 |
< |
call checkNeighborList(nGroupsInRow, q_group_row, listSkin, & |
944 |
> |
call checkNeighborList(nGroupsInRow, q_group_row, skinThickness, & |
945 |
|
update_nlist) |
946 |
|
#else |
947 |
< |
call checkNeighborList(nGroups, q_group, listSkin, & |
947 |
> |
call checkNeighborList(nGroups, q_group, skinThickness, & |
948 |
|
update_nlist) |
949 |
|
#endif |
950 |
|
endif |
1002 |
|
me_j = atid(j) |
1003 |
|
call get_interatomic_vector(q_group(:,i), & |
1004 |
|
q_group(:,j), d_grp, rgrpsq) |
1005 |
< |
#endif |
1005 |
> |
#endif |
1006 |
|
|
1007 |
< |
if (rgrpsq < gtypeCutoffMap(groupToGtype(i),groupToGtype(j))%rListsq) then |
1007 |
> |
if (rgrpsq < gtypeCutoffMap(groupToGtypeRow(i),groupToGtypeCol(j))%rListsq) then |
1008 |
|
if (update_nlist) then |
1009 |
|
nlist = nlist + 1 |
1010 |
|
|
1024 |
|
|
1025 |
|
list(nlist) = j |
1026 |
|
endif |
1027 |
+ |
|
1028 |
+ |
if (rgrpsq < gtypeCutoffMap(groupToGtypeRow(i),groupToGtypeCol(j))%rCutsq) then |
1029 |
|
|
1030 |
< |
if (loop .eq. PAIR_LOOP) then |
1031 |
< |
vij = 0.0d0 |
1032 |
< |
fij(1:3) = 0.0d0 |
1033 |
< |
endif |
1034 |
< |
|
1035 |
< |
call get_switch(rgrpsq, sw, dswdr, rgrp, group_switch, & |
1036 |
< |
in_switching_region) |
1037 |
< |
|
1038 |
< |
n_in_j = groupStartCol(j+1) - groupStartCol(j) |
1039 |
< |
|
1040 |
< |
do ia = groupStartRow(i), groupStartRow(i+1)-1 |
1041 |
< |
|
1042 |
< |
atom1 = groupListRow(ia) |
1043 |
< |
|
1044 |
< |
inner: do jb = groupStartCol(j), groupStartCol(j+1)-1 |
1045 |
< |
|
1046 |
< |
atom2 = groupListCol(jb) |
1047 |
< |
|
1048 |
< |
if (skipThisPair(atom1, atom2)) cycle inner |
1049 |
< |
|
1050 |
< |
if ((n_in_i .eq. 1).and.(n_in_j .eq. 1)) then |
1051 |
< |
d_atm(1:3) = d_grp(1:3) |
1052 |
< |
ratmsq = rgrpsq |
1053 |
< |
else |
1030 |
> |
rCut = gtypeCutoffMap(groupToGtypeRow(i),groupToGtypeCol(j))%rCut |
1031 |
> |
if (loop .eq. PAIR_LOOP) then |
1032 |
> |
vij = 0.0_dp |
1033 |
> |
fij(1) = 0.0_dp |
1034 |
> |
fij(2) = 0.0_dp |
1035 |
> |
fij(3) = 0.0_dp |
1036 |
> |
endif |
1037 |
> |
|
1038 |
> |
call get_switch(rgrpsq, sw, dswdr,rgrp, in_switching_region) |
1039 |
> |
|
1040 |
> |
n_in_j = groupStartCol(j+1) - groupStartCol(j) |
1041 |
> |
|
1042 |
> |
do ia = groupStartRow(i), groupStartRow(i+1)-1 |
1043 |
> |
|
1044 |
> |
atom1 = groupListRow(ia) |
1045 |
> |
|
1046 |
> |
inner: do jb = groupStartCol(j), groupStartCol(j+1)-1 |
1047 |
> |
|
1048 |
> |
atom2 = groupListCol(jb) |
1049 |
> |
|
1050 |
> |
if (skipThisPair(atom1, atom2)) cycle inner |
1051 |
> |
|
1052 |
> |
if ((n_in_i .eq. 1).and.(n_in_j .eq. 1)) then |
1053 |
> |
d_atm(1) = d_grp(1) |
1054 |
> |
d_atm(2) = d_grp(2) |
1055 |
> |
d_atm(3) = d_grp(3) |
1056 |
> |
ratmsq = rgrpsq |
1057 |
> |
else |
1058 |
|
#ifdef IS_MPI |
1059 |
< |
call get_interatomic_vector(q_Row(:,atom1), & |
1060 |
< |
q_Col(:,atom2), d_atm, ratmsq) |
1059 |
> |
call get_interatomic_vector(q_Row(:,atom1), & |
1060 |
> |
q_Col(:,atom2), d_atm, ratmsq) |
1061 |
|
#else |
1062 |
< |
call get_interatomic_vector(q(:,atom1), & |
1063 |
< |
q(:,atom2), d_atm, ratmsq) |
1062 |
> |
call get_interatomic_vector(q(:,atom1), & |
1063 |
> |
q(:,atom2), d_atm, ratmsq) |
1064 |
|
#endif |
1065 |
< |
endif |
1066 |
< |
|
1067 |
< |
if (loop .eq. PREPAIR_LOOP) then |
1065 |
> |
endif |
1066 |
> |
|
1067 |
> |
if (loop .eq. PREPAIR_LOOP) then |
1068 |
|
#ifdef IS_MPI |
1069 |
< |
call do_prepair(atom1, atom2, ratmsq, d_atm, sw, & |
1070 |
< |
rgrpsq, d_grp, do_pot, do_stress, & |
1071 |
< |
eFrame, A, f, t, pot_local) |
1069 |
> |
call do_prepair(atom1, atom2, ratmsq, d_atm, sw, & |
1070 |
> |
rgrpsq, d_grp, rCut, do_pot, do_stress, & |
1071 |
> |
eFrame, A, f, t, pot_local) |
1072 |
|
#else |
1073 |
< |
call do_prepair(atom1, atom2, ratmsq, d_atm, sw, & |
1074 |
< |
rgrpsq, d_grp, do_pot, do_stress, & |
1075 |
< |
eFrame, A, f, t, pot) |
1073 |
> |
call do_prepair(atom1, atom2, ratmsq, d_atm, sw, & |
1074 |
> |
rgrpsq, d_grp, rCut, do_pot, do_stress, & |
1075 |
> |
eFrame, A, f, t, pot) |
1076 |
|
#endif |
1077 |
< |
else |
1077 |
> |
else |
1078 |
|
#ifdef IS_MPI |
1079 |
< |
call do_pair(atom1, atom2, ratmsq, d_atm, sw, & |
1080 |
< |
do_pot, & |
1081 |
< |
eFrame, A, f, t, pot_local, vpair, fpair) |
1079 |
> |
call do_pair(atom1, atom2, ratmsq, d_atm, sw, & |
1080 |
> |
do_pot, eFrame, A, f, t, pot_local, vpair, & |
1081 |
> |
fpair, d_grp, rgrp, rCut) |
1082 |
|
#else |
1083 |
< |
call do_pair(atom1, atom2, ratmsq, d_atm, sw, & |
1084 |
< |
do_pot, & |
1085 |
< |
eFrame, A, f, t, pot, vpair, fpair) |
1083 |
> |
call do_pair(atom1, atom2, ratmsq, d_atm, sw, & |
1084 |
> |
do_pot, eFrame, A, f, t, pot, vpair, fpair, & |
1085 |
> |
d_grp, rgrp, rCut) |
1086 |
|
#endif |
1087 |
+ |
vij = vij + vpair |
1088 |
+ |
fij(1) = fij(1) + fpair(1) |
1089 |
+ |
fij(2) = fij(2) + fpair(2) |
1090 |
+ |
fij(3) = fij(3) + fpair(3) |
1091 |
+ |
if (do_stress) then |
1092 |
+ |
call add_stress_tensor(d_atm, fpair, tau) |
1093 |
+ |
endif |
1094 |
+ |
endif |
1095 |
+ |
enddo inner |
1096 |
+ |
enddo |
1097 |
|
|
1098 |
< |
vij = vij + vpair |
1099 |
< |
fij(1:3) = fij(1:3) + fpair(1:3) |
1100 |
< |
endif |
1101 |
< |
enddo inner |
1102 |
< |
enddo |
1103 |
< |
|
1104 |
< |
if (loop .eq. PAIR_LOOP) then |
1105 |
< |
if (in_switching_region) then |
1106 |
< |
swderiv = vij*dswdr/rgrp |
1107 |
< |
fij(1) = fij(1) + swderiv*d_grp(1) |
1108 |
< |
fij(2) = fij(2) + swderiv*d_grp(2) |
1109 |
< |
fij(3) = fij(3) + swderiv*d_grp(3) |
1110 |
< |
|
885 |
< |
do ia=groupStartRow(i), groupStartRow(i+1)-1 |
886 |
< |
atom1=groupListRow(ia) |
887 |
< |
mf = mfactRow(atom1) |
1098 |
> |
if (loop .eq. PAIR_LOOP) then |
1099 |
> |
if (in_switching_region) then |
1100 |
> |
swderiv = vij*dswdr/rgrp |
1101 |
> |
fij(1) = fij(1) + swderiv*d_grp(1) |
1102 |
> |
fij(2) = fij(2) + swderiv*d_grp(2) |
1103 |
> |
fij(3) = fij(3) + swderiv*d_grp(3) |
1104 |
> |
|
1105 |
> |
do ia=groupStartRow(i), groupStartRow(i+1)-1 |
1106 |
> |
atom1=groupListRow(ia) |
1107 |
> |
mf = mfactRow(atom1) |
1108 |
> |
! fg is the force on atom ia due to cutoff group's |
1109 |
> |
! presence in switching region |
1110 |
> |
fg = swderiv*d_grp*mf |
1111 |
|
#ifdef IS_MPI |
1112 |
< |
f_Row(1,atom1) = f_Row(1,atom1) + swderiv*d_grp(1)*mf |
1113 |
< |
f_Row(2,atom1) = f_Row(2,atom1) + swderiv*d_grp(2)*mf |
1114 |
< |
f_Row(3,atom1) = f_Row(3,atom1) + swderiv*d_grp(3)*mf |
1112 |
> |
f_Row(1,atom1) = f_Row(1,atom1) + fg(1) |
1113 |
> |
f_Row(2,atom1) = f_Row(2,atom1) + fg(2) |
1114 |
> |
f_Row(3,atom1) = f_Row(3,atom1) + fg(3) |
1115 |
|
#else |
1116 |
< |
f(1,atom1) = f(1,atom1) + swderiv*d_grp(1)*mf |
1117 |
< |
f(2,atom1) = f(2,atom1) + swderiv*d_grp(2)*mf |
1118 |
< |
f(3,atom1) = f(3,atom1) + swderiv*d_grp(3)*mf |
1116 |
> |
f(1,atom1) = f(1,atom1) + fg(1) |
1117 |
> |
f(2,atom1) = f(2,atom1) + fg(2) |
1118 |
> |
f(3,atom1) = f(3,atom1) + fg(3) |
1119 |
|
#endif |
1120 |
< |
enddo |
1121 |
< |
|
1122 |
< |
do jb=groupStartCol(j), groupStartCol(j+1)-1 |
1123 |
< |
atom2=groupListCol(jb) |
901 |
< |
mf = mfactCol(atom2) |
1120 |
> |
if (n_in_i .gt. 1) then |
1121 |
> |
if (do_stress.and.SIM_uses_AtomicVirial) then |
1122 |
> |
! find the distance between the atom and the center of |
1123 |
> |
! the cutoff group: |
1124 |
|
#ifdef IS_MPI |
1125 |
< |
f_Col(1,atom2) = f_Col(1,atom2) - swderiv*d_grp(1)*mf |
1126 |
< |
f_Col(2,atom2) = f_Col(2,atom2) - swderiv*d_grp(2)*mf |
905 |
< |
f_Col(3,atom2) = f_Col(3,atom2) - swderiv*d_grp(3)*mf |
1125 |
> |
call get_interatomic_vector(q_Row(:,atom1), & |
1126 |
> |
q_group_Row(:,i), dag, rag) |
1127 |
|
#else |
1128 |
< |
f(1,atom2) = f(1,atom2) - swderiv*d_grp(1)*mf |
1129 |
< |
f(2,atom2) = f(2,atom2) - swderiv*d_grp(2)*mf |
909 |
< |
f(3,atom2) = f(3,atom2) - swderiv*d_grp(3)*mf |
1128 |
> |
call get_interatomic_vector(q(:,atom1), & |
1129 |
> |
q_group(:,i), dag, rag) |
1130 |
|
#endif |
1131 |
< |
enddo |
1131 |
> |
call add_stress_tensor(dag,fg,tau) |
1132 |
> |
endif |
1133 |
> |
endif |
1134 |
> |
enddo |
1135 |
> |
|
1136 |
> |
do jb=groupStartCol(j), groupStartCol(j+1)-1 |
1137 |
> |
atom2=groupListCol(jb) |
1138 |
> |
mf = mfactCol(atom2) |
1139 |
> |
! fg is the force on atom jb due to cutoff group's |
1140 |
> |
! presence in switching region |
1141 |
> |
fg = -swderiv*d_grp*mf |
1142 |
> |
#ifdef IS_MPI |
1143 |
> |
f_Col(1,atom2) = f_Col(1,atom2) + fg(1) |
1144 |
> |
f_Col(2,atom2) = f_Col(2,atom2) + fg(2) |
1145 |
> |
f_Col(3,atom2) = f_Col(3,atom2) + fg(3) |
1146 |
> |
#else |
1147 |
> |
f(1,atom2) = f(1,atom2) + fg(1) |
1148 |
> |
f(2,atom2) = f(2,atom2) + fg(2) |
1149 |
> |
f(3,atom2) = f(3,atom2) + fg(3) |
1150 |
> |
#endif |
1151 |
> |
if (n_in_j .gt. 1) then |
1152 |
> |
if (do_stress.and.SIM_uses_AtomicVirial) then |
1153 |
> |
! find the distance between the atom and the center of |
1154 |
> |
! the cutoff group: |
1155 |
> |
#ifdef IS_MPI |
1156 |
> |
call get_interatomic_vector(q_Col(:,atom2), & |
1157 |
> |
q_group_Col(:,j), dag, rag) |
1158 |
> |
#else |
1159 |
> |
call get_interatomic_vector(q(:,atom2), & |
1160 |
> |
q_group(:,j), dag, rag) |
1161 |
> |
#endif |
1162 |
> |
call add_stress_tensor(dag,fg,tau) |
1163 |
> |
endif |
1164 |
> |
endif |
1165 |
> |
enddo |
1166 |
> |
endif |
1167 |
|
endif |
913 |
– |
|
914 |
– |
if (do_stress) call add_stress_tensor(d_grp, fij) |
1168 |
|
endif |
1169 |
< |
end if |
1169 |
> |
endif |
1170 |
|
enddo |
1171 |
+ |
|
1172 |
|
enddo outer |
1173 |
|
|
1174 |
|
if (update_nlist) then |
1228 |
|
|
1229 |
|
if (do_pot) then |
1230 |
|
! scatter/gather pot_row into the members of my column |
1231 |
< |
call scatter(pot_Row, pot_Temp, plan_atom_row) |
1232 |
< |
|
1231 |
> |
do i = 1,LR_POT_TYPES |
1232 |
> |
call scatter(pot_Row(i,:), pot_Temp(i,:), plan_atom_row) |
1233 |
> |
end do |
1234 |
|
! scatter/gather pot_local into all other procs |
1235 |
|
! add resultant to get total pot |
1236 |
|
do i = 1, nlocal |
1237 |
< |
pot_local = pot_local + pot_Temp(i) |
1237 |
> |
pot_local(1:LR_POT_TYPES) = pot_local(1:LR_POT_TYPES) & |
1238 |
> |
+ pot_Temp(1:LR_POT_TYPES,i) |
1239 |
|
enddo |
1240 |
|
|
1241 |
|
pot_Temp = 0.0_DP |
1242 |
< |
|
1243 |
< |
call scatter(pot_Col, pot_Temp, plan_atom_col) |
1242 |
> |
do i = 1,LR_POT_TYPES |
1243 |
> |
call scatter(pot_Col(i,:), pot_Temp(i,:), plan_atom_col) |
1244 |
> |
end do |
1245 |
|
do i = 1, nlocal |
1246 |
< |
pot_local = pot_local + pot_Temp(i) |
1246 |
> |
pot_local(1:LR_POT_TYPES) = pot_local(1:LR_POT_TYPES)& |
1247 |
> |
+ pot_Temp(1:LR_POT_TYPES,i) |
1248 |
|
enddo |
1249 |
|
|
1250 |
|
endif |
1251 |
|
#endif |
1252 |
|
|
1253 |
< |
if (FF_RequiresPostpairCalc() .and. SIM_requires_postpair_calc) then |
1253 |
> |
if (SIM_requires_postpair_calc) then |
1254 |
> |
do i = 1, nlocal |
1255 |
> |
|
1256 |
> |
! we loop only over the local atoms, so we don't need row and column |
1257 |
> |
! lookups for the types |
1258 |
> |
|
1259 |
> |
me_i = atid(i) |
1260 |
> |
|
1261 |
> |
! is the atom electrostatic? See if it would have an |
1262 |
> |
! electrostatic interaction with itself |
1263 |
> |
iHash = InteractionHash(me_i,me_i) |
1264 |
|
|
1265 |
< |
if ((FF_uses_RF .and. SIM_uses_RF) .or. (corrMethod == 3)) then |
998 |
< |
|
1265 |
> |
if ( iand(iHash, ELECTROSTATIC_PAIR).ne.0 ) then |
1266 |
|
#ifdef IS_MPI |
1267 |
< |
call scatter(rf_Row,rf,plan_atom_row_3d) |
1268 |
< |
call scatter(rf_Col,rf_Temp,plan_atom_col_3d) |
1269 |
< |
do i = 1,nlocal |
1270 |
< |
rf(1:3,i) = rf(1:3,i) + rf_Temp(1:3,i) |
1271 |
< |
end do |
1267 |
> |
call self_self(i, eFrame, pot_local(ELECTROSTATIC_POT), & |
1268 |
> |
t, do_pot) |
1269 |
> |
#else |
1270 |
> |
call self_self(i, eFrame, pot(ELECTROSTATIC_POT), & |
1271 |
> |
t, do_pot) |
1272 |
|
#endif |
1273 |
< |
|
1274 |
< |
do i = 1, nLocal |
1275 |
< |
|
1276 |
< |
rfpot = 0.0_DP |
1273 |
> |
endif |
1274 |
> |
|
1275 |
> |
|
1276 |
> |
if (electrostaticSummationMethod.eq.REACTION_FIELD) then |
1277 |
> |
|
1278 |
> |
! loop over the excludes to accumulate RF stuff we've |
1279 |
> |
! left out of the normal pair loop |
1280 |
> |
|
1281 |
> |
do i1 = 1, nSkipsForAtom(i) |
1282 |
> |
j = skipsForAtom(i, i1) |
1283 |
> |
|
1284 |
> |
! prevent overcounting of the skips |
1285 |
> |
if (i.lt.j) then |
1286 |
> |
call get_interatomic_vector(q(:,i), q(:,j), d_atm, ratmsq) |
1287 |
> |
rVal = sqrt(ratmsq) |
1288 |
> |
call get_switch(ratmsq, sw, dswdr, rVal,in_switching_region) |
1289 |
|
#ifdef IS_MPI |
1290 |
< |
me_i = atid_row(i) |
1290 |
> |
call rf_self_excludes(i, j, sw, eFrame, d_atm, rVal, & |
1291 |
> |
vpair, pot_local(ELECTROSTATIC_POT), f, t, do_pot) |
1292 |
|
#else |
1293 |
< |
me_i = atid(i) |
1293 |
> |
call rf_self_excludes(i, j, sw, eFrame, d_atm, rVal, & |
1294 |
> |
vpair, pot(ELECTROSTATIC_POT), f, t, do_pot) |
1295 |
|
#endif |
1296 |
< |
iHash = InteractionHash(me_i,me_j) |
1297 |
< |
|
1298 |
< |
if ( iand(iHash, ELECTROSTATIC_PAIR).ne.0 ) then |
1296 |
> |
endif |
1297 |
> |
enddo |
1298 |
> |
endif |
1299 |
|
|
1300 |
< |
mu_i = getDipoleMoment(me_i) |
1020 |
< |
|
1021 |
< |
!! The reaction field needs to include a self contribution |
1022 |
< |
!! to the field: |
1023 |
< |
call accumulate_self_rf(i, mu_i, eFrame) |
1024 |
< |
!! Get the reaction field contribution to the |
1025 |
< |
!! potential and torques: |
1026 |
< |
call reaction_field_final(i, mu_i, eFrame, rfpot, t, do_pot) |
1300 |
> |
if (do_box_dipole) then |
1301 |
|
#ifdef IS_MPI |
1302 |
< |
pot_local = pot_local + rfpot |
1302 |
> |
call accumulate_box_dipole(i, eFrame, q(:,i), pChg_local, & |
1303 |
> |
nChg_local, pChgPos_local, nChgPos_local, dipVec_local, & |
1304 |
> |
pChgCount_local, nChgCount_local) |
1305 |
|
#else |
1306 |
< |
pot = pot + rfpot |
1307 |
< |
|
1306 |
> |
call accumulate_box_dipole(i, eFrame, q(:,i), pChg, nChg, & |
1307 |
> |
pChgPos, nChgPos, dipVec, pChgCount, nChgCount) |
1308 |
|
#endif |
1309 |
< |
endif |
1310 |
< |
enddo |
1035 |
< |
endif |
1309 |
> |
endif |
1310 |
> |
enddo |
1311 |
|
endif |
1312 |
|
|
1038 |
– |
|
1313 |
|
#ifdef IS_MPI |
1040 |
– |
|
1314 |
|
if (do_pot) then |
1315 |
< |
pot = pot + pot_local |
1316 |
< |
!! we assume the c code will do the allreduce to get the total potential |
1317 |
< |
!! we could do it right here if we needed to... |
1315 |
> |
#ifdef SINGLE_PRECISION |
1316 |
> |
call mpi_allreduce(pot_local, pot, LR_POT_TYPES,mpi_real,mpi_sum, & |
1317 |
> |
mpi_comm_world,mpi_err) |
1318 |
> |
#else |
1319 |
> |
call mpi_allreduce(pot_local, pot, LR_POT_TYPES,mpi_double_precision, & |
1320 |
> |
mpi_sum, mpi_comm_world,mpi_err) |
1321 |
> |
#endif |
1322 |
|
endif |
1323 |
+ |
|
1324 |
+ |
if (do_box_dipole) then |
1325 |
|
|
1326 |
< |
if (do_stress) then |
1327 |
< |
call mpi_allreduce(tau_Temp, tau, 9,mpi_double_precision,mpi_sum, & |
1328 |
< |
mpi_comm_world,mpi_err) |
1329 |
< |
call mpi_allreduce(virial_Temp, virial,1,mpi_double_precision,mpi_sum, & |
1330 |
< |
mpi_comm_world,mpi_err) |
1331 |
< |
endif |
1332 |
< |
|
1326 |
> |
#ifdef SINGLE_PRECISION |
1327 |
> |
call mpi_allreduce(pChg_local, pChg, 1, mpi_real, mpi_sum, & |
1328 |
> |
mpi_comm_world, mpi_err) |
1329 |
> |
call mpi_allreduce(nChg_local, nChg, 1, mpi_real, mpi_sum, & |
1330 |
> |
mpi_comm_world, mpi_err) |
1331 |
> |
call mpi_allreduce(pChgCount_local, pChgCount, 1, mpi_integer, mpi_sum,& |
1332 |
> |
mpi_comm_world, mpi_err) |
1333 |
> |
call mpi_allreduce(nChgCount_local, nChgCount, 1, mpi_integer, mpi_sum,& |
1334 |
> |
mpi_comm_world, mpi_err) |
1335 |
> |
call mpi_allreduce(pChgPos_local, pChgPos, 3, mpi_real, mpi_sum, & |
1336 |
> |
mpi_comm_world, mpi_err) |
1337 |
> |
call mpi_allreduce(nChgPos_local, nChgPos, 3, mpi_real, mpi_sum, & |
1338 |
> |
mpi_comm_world, mpi_err) |
1339 |
> |
call mpi_allreduce(dipVec_local, dipVec, 3, mpi_real, mpi_sum, & |
1340 |
> |
mpi_comm_world, mpi_err) |
1341 |
|
#else |
1342 |
+ |
call mpi_allreduce(pChg_local, pChg, 1, mpi_double_precision, mpi_sum, & |
1343 |
+ |
mpi_comm_world, mpi_err) |
1344 |
+ |
call mpi_allreduce(nChg_local, nChg, 1, mpi_double_precision, mpi_sum, & |
1345 |
+ |
mpi_comm_world, mpi_err) |
1346 |
+ |
call mpi_allreduce(pChgCount_local, pChgCount, 1, mpi_integer,& |
1347 |
+ |
mpi_sum, mpi_comm_world, mpi_err) |
1348 |
+ |
call mpi_allreduce(nChgCount_local, nChgCount, 1, mpi_integer,& |
1349 |
+ |
mpi_sum, mpi_comm_world, mpi_err) |
1350 |
+ |
call mpi_allreduce(pChgPos_local, pChgPos, 3, mpi_double_precision, & |
1351 |
+ |
mpi_sum, mpi_comm_world, mpi_err) |
1352 |
+ |
call mpi_allreduce(nChgPos_local, nChgPos, 3, mpi_double_precision, & |
1353 |
+ |
mpi_sum, mpi_comm_world, mpi_err) |
1354 |
+ |
call mpi_allreduce(dipVec_local, dipVec, 3, mpi_double_precision, & |
1355 |
+ |
mpi_sum, mpi_comm_world, mpi_err) |
1356 |
+ |
#endif |
1357 |
|
|
1056 |
– |
if (do_stress) then |
1057 |
– |
tau = tau_Temp |
1058 |
– |
virial = virial_Temp |
1358 |
|
endif |
1359 |
< |
|
1359 |
> |
|
1360 |
|
#endif |
1361 |
|
|
1362 |
+ |
if (do_box_dipole) then |
1363 |
+ |
! first load the accumulated dipole moment (if dipoles were present) |
1364 |
+ |
boxDipole(1) = dipVec(1) |
1365 |
+ |
boxDipole(2) = dipVec(2) |
1366 |
+ |
boxDipole(3) = dipVec(3) |
1367 |
+ |
|
1368 |
+ |
! now include the dipole moment due to charges |
1369 |
+ |
! use the lesser of the positive and negative charge totals |
1370 |
+ |
if (nChg .le. pChg) then |
1371 |
+ |
chg_value = nChg |
1372 |
+ |
else |
1373 |
+ |
chg_value = pChg |
1374 |
+ |
endif |
1375 |
+ |
|
1376 |
+ |
! find the average positions |
1377 |
+ |
if (pChgCount .gt. 0 .and. nChgCount .gt. 0) then |
1378 |
+ |
pChgPos = pChgPos / pChgCount |
1379 |
+ |
nChgPos = nChgPos / nChgCount |
1380 |
+ |
endif |
1381 |
+ |
|
1382 |
+ |
! dipole is from the negative to the positive (physics notation) |
1383 |
+ |
chgVec(1) = pChgPos(1) - nChgPos(1) |
1384 |
+ |
chgVec(2) = pChgPos(2) - nChgPos(2) |
1385 |
+ |
chgVec(3) = pChgPos(3) - nChgPos(3) |
1386 |
+ |
|
1387 |
+ |
boxDipole(1) = boxDipole(1) + chgVec(1) * chg_value |
1388 |
+ |
boxDipole(2) = boxDipole(2) + chgVec(2) * chg_value |
1389 |
+ |
boxDipole(3) = boxDipole(3) + chgVec(3) * chg_value |
1390 |
+ |
|
1391 |
+ |
endif |
1392 |
+ |
|
1393 |
|
end subroutine do_force_loop |
1394 |
|
|
1395 |
|
subroutine do_pair(i, j, rijsq, d, sw, do_pot, & |
1396 |
< |
eFrame, A, f, t, pot, vpair, fpair) |
1396 |
> |
eFrame, A, f, t, pot, vpair, fpair, d_grp, r_grp, rCut) |
1397 |
|
|
1398 |
< |
real( kind = dp ) :: pot, vpair, sw |
1398 |
> |
real( kind = dp ) :: vpair, sw |
1399 |
> |
real( kind = dp ), dimension(LR_POT_TYPES) :: pot |
1400 |
|
real( kind = dp ), dimension(3) :: fpair |
1401 |
|
real( kind = dp ), dimension(nLocal) :: mfact |
1402 |
|
real( kind = dp ), dimension(9,nLocal) :: eFrame |
1407 |
|
logical, intent(inout) :: do_pot |
1408 |
|
integer, intent(in) :: i, j |
1409 |
|
real ( kind = dp ), intent(inout) :: rijsq |
1410 |
< |
real ( kind = dp ) :: r |
1410 |
> |
real ( kind = dp ), intent(inout) :: r_grp |
1411 |
|
real ( kind = dp ), intent(inout) :: d(3) |
1412 |
+ |
real ( kind = dp ), intent(inout) :: d_grp(3) |
1413 |
+ |
real ( kind = dp ), intent(inout) :: rCut |
1414 |
+ |
real ( kind = dp ) :: r |
1415 |
+ |
real ( kind = dp ) :: a_k, b_k, c_k, d_k, dx |
1416 |
|
integer :: me_i, me_j |
1417 |
+ |
integer :: k |
1418 |
|
|
1419 |
|
integer :: iHash |
1420 |
|
|
1421 |
|
r = sqrt(rijsq) |
1422 |
< |
vpair = 0.0d0 |
1423 |
< |
fpair(1:3) = 0.0d0 |
1422 |
> |
|
1423 |
> |
vpair = 0.0_dp |
1424 |
> |
fpair(1:3) = 0.0_dp |
1425 |
|
|
1426 |
|
#ifdef IS_MPI |
1427 |
|
me_i = atid_row(i) |
1432 |
|
#endif |
1433 |
|
|
1434 |
|
iHash = InteractionHash(me_i, me_j) |
1435 |
< |
|
1435 |
> |
|
1436 |
|
if ( iand(iHash, LJ_PAIR).ne.0 ) then |
1437 |
< |
call do_lj_pair(i, j, d, r, rijsq, sw, vpair, fpair, pot, f, do_pot) |
1437 |
> |
call do_lj_pair(i, j, d, r, rijsq, rcut, sw, vpair, fpair, & |
1438 |
> |
pot(VDW_POT), f, do_pot) |
1439 |
|
endif |
1440 |
< |
|
1440 |
> |
|
1441 |
|
if ( iand(iHash, ELECTROSTATIC_PAIR).ne.0 ) then |
1442 |
< |
call doElectrostaticPair(i, j, d, r, rijsq, sw, vpair, fpair, & |
1443 |
< |
pot, eFrame, f, t, do_pot, corrMethod, rcuti) |
1106 |
< |
|
1107 |
< |
if ((FF_uses_RF .and. SIM_uses_RF) .or. (corrMethod == 3)) then |
1108 |
< |
|
1109 |
< |
! CHECK ME (RF needs to know about all electrostatic types) |
1110 |
< |
call accumulate_rf(i, j, r, eFrame, sw) |
1111 |
< |
call rf_correct_forces(i, j, d, r, eFrame, sw, f, fpair) |
1112 |
< |
endif |
1113 |
< |
|
1442 |
> |
call doElectrostaticPair(i, j, d, r, rijsq, rcut, sw, vpair, fpair, & |
1443 |
> |
pot(ELECTROSTATIC_POT), eFrame, f, t, do_pot) |
1444 |
|
endif |
1445 |
< |
|
1445 |
> |
|
1446 |
|
if ( iand(iHash, STICKY_PAIR).ne.0 ) then |
1447 |
|
call do_sticky_pair(i, j, d, r, rijsq, sw, vpair, fpair, & |
1448 |
< |
pot, A, f, t, do_pot) |
1448 |
> |
pot(HB_POT), A, f, t, do_pot) |
1449 |
|
endif |
1450 |
< |
|
1450 |
> |
|
1451 |
|
if ( iand(iHash, STICKYPOWER_PAIR).ne.0 ) then |
1452 |
|
call do_sticky_power_pair(i, j, d, r, rijsq, sw, vpair, fpair, & |
1453 |
< |
pot, A, f, t, do_pot) |
1453 |
> |
pot(HB_POT), A, f, t, do_pot) |
1454 |
|
endif |
1455 |
< |
|
1455 |
> |
|
1456 |
|
if ( iand(iHash, GAYBERNE_PAIR).ne.0 ) then |
1457 |
|
call do_gb_pair(i, j, d, r, rijsq, sw, vpair, fpair, & |
1458 |
< |
pot, A, f, t, do_pot) |
1458 |
> |
pot(VDW_POT), A, f, t, do_pot) |
1459 |
|
endif |
1460 |
|
|
1461 |
|
if ( iand(iHash, GAYBERNE_LJ).ne.0 ) then |
1462 |
< |
! call do_gblj_pair(i, j, d, r, rijsq, sw, vpair, fpair, & |
1463 |
< |
! pot, A, f, t, do_pot) |
1462 |
> |
call do_gb_pair(i, j, d, r, rijsq, sw, vpair, fpair, & |
1463 |
> |
pot(VDW_POT), A, f, t, do_pot) |
1464 |
|
endif |
1465 |
< |
|
1465 |
> |
|
1466 |
|
if ( iand(iHash, EAM_PAIR).ne.0 ) then |
1467 |
< |
call do_eam_pair(i, j, d, r, rijsq, sw, vpair, fpair, pot, f, & |
1468 |
< |
do_pot) |
1467 |
> |
call do_eam_pair(i, j, d, r, rijsq, sw, vpair, fpair, & |
1468 |
> |
pot(METALLIC_POT), f, do_pot) |
1469 |
|
endif |
1470 |
< |
|
1470 |
> |
|
1471 |
|
if ( iand(iHash, SHAPE_PAIR).ne.0 ) then |
1472 |
|
call do_shape_pair(i, j, d, r, rijsq, sw, vpair, fpair, & |
1473 |
< |
pot, A, f, t, do_pot) |
1473 |
> |
pot(VDW_POT), A, f, t, do_pot) |
1474 |
|
endif |
1475 |
< |
|
1475 |
> |
|
1476 |
|
if ( iand(iHash, SHAPE_LJ).ne.0 ) then |
1477 |
|
call do_shape_pair(i, j, d, r, rijsq, sw, vpair, fpair, & |
1478 |
< |
pot, A, f, t, do_pot) |
1478 |
> |
pot(VDW_POT), A, f, t, do_pot) |
1479 |
|
endif |
1480 |
< |
|
1480 |
> |
|
1481 |
> |
if ( iand(iHash, SC_PAIR).ne.0 ) then |
1482 |
> |
call do_SC_pair(i, j, d, r, rijsq, rcut, sw, vpair, fpair, & |
1483 |
> |
pot(METALLIC_POT), f, do_pot) |
1484 |
> |
endif |
1485 |
> |
|
1486 |
|
end subroutine do_pair |
1487 |
|
|
1488 |
< |
subroutine do_prepair(i, j, rijsq, d, sw, rcijsq, dc, & |
1488 |
> |
subroutine do_prepair(i, j, rijsq, d, sw, rcijsq, dc, rCut, & |
1489 |
|
do_pot, do_stress, eFrame, A, f, t, pot) |
1490 |
|
|
1491 |
< |
real( kind = dp ) :: pot, sw |
1491 |
> |
real( kind = dp ) :: sw |
1492 |
> |
real( kind = dp ), dimension(LR_POT_TYPES) :: pot |
1493 |
|
real( kind = dp ), dimension(9,nLocal) :: eFrame |
1494 |
|
real (kind=dp), dimension(9,nLocal) :: A |
1495 |
|
real (kind=dp), dimension(3,nLocal) :: f |
1497 |
|
|
1498 |
|
logical, intent(inout) :: do_pot, do_stress |
1499 |
|
integer, intent(in) :: i, j |
1500 |
< |
real ( kind = dp ), intent(inout) :: rijsq, rcijsq |
1500 |
> |
real ( kind = dp ), intent(inout) :: rijsq, rcijsq, rCut |
1501 |
|
real ( kind = dp ) :: r, rc |
1502 |
|
real ( kind = dp ), intent(inout) :: d(3), dc(3) |
1503 |
|
|
1504 |
|
integer :: me_i, me_j, iHash |
1505 |
|
|
1506 |
|
r = sqrt(rijsq) |
1507 |
< |
|
1507 |
> |
|
1508 |
|
#ifdef IS_MPI |
1509 |
|
me_i = atid_row(i) |
1510 |
|
me_j = atid_col(j) |
1516 |
|
iHash = InteractionHash(me_i, me_j) |
1517 |
|
|
1518 |
|
if ( iand(iHash, EAM_PAIR).ne.0 ) then |
1519 |
< |
call calc_EAM_prepair_rho(i, j, d, r, rijsq ) |
1519 |
> |
call calc_EAM_prepair_rho(i, j, d, r, rijsq) |
1520 |
|
endif |
1521 |
+ |
|
1522 |
+ |
if ( iand(iHash, SC_PAIR).ne.0 ) then |
1523 |
+ |
call calc_SC_prepair_rho(i, j, d, r, rijsq, rcut ) |
1524 |
+ |
endif |
1525 |
|
|
1526 |
|
end subroutine do_prepair |
1527 |
|
|
1528 |
|
|
1529 |
|
subroutine do_preforce(nlocal,pot) |
1530 |
|
integer :: nlocal |
1531 |
< |
real( kind = dp ) :: pot |
1531 |
> |
real( kind = dp ),dimension(LR_POT_TYPES) :: pot |
1532 |
|
|
1533 |
|
if (FF_uses_EAM .and. SIM_uses_EAM) then |
1534 |
< |
call calc_EAM_preforce_Frho(nlocal,pot) |
1534 |
> |
call calc_EAM_preforce_Frho(nlocal,pot(METALLIC_POT)) |
1535 |
|
endif |
1536 |
< |
|
1537 |
< |
|
1536 |
> |
if (FF_uses_SC .and. SIM_uses_SC) then |
1537 |
> |
call calc_SC_preforce_Frho(nlocal,pot(METALLIC_POT)) |
1538 |
> |
endif |
1539 |
|
end subroutine do_preforce |
1540 |
|
|
1541 |
|
|
1547 |
|
real( kind = dp ) :: d(3), scaled(3) |
1548 |
|
integer i |
1549 |
|
|
1550 |
< |
d(1:3) = q_j(1:3) - q_i(1:3) |
1550 |
> |
d(1) = q_j(1) - q_i(1) |
1551 |
> |
d(2) = q_j(2) - q_i(2) |
1552 |
> |
d(3) = q_j(3) - q_i(3) |
1553 |
|
|
1554 |
|
! Wrap back into periodic box if necessary |
1555 |
|
if ( SIM_uses_PBC ) then |
1556 |
|
|
1557 |
|
if( .not.boxIsOrthorhombic ) then |
1558 |
|
! calc the scaled coordinates. |
1559 |
+ |
! scaled = matmul(HmatInv, d) |
1560 |
|
|
1561 |
< |
scaled = matmul(HmatInv, d) |
1562 |
< |
|
1561 |
> |
scaled(1) = HmatInv(1,1)*d(1) + HmatInv(1,2)*d(2) + HmatInv(1,3)*d(3) |
1562 |
> |
scaled(2) = HmatInv(2,1)*d(1) + HmatInv(2,2)*d(2) + HmatInv(2,3)*d(3) |
1563 |
> |
scaled(3) = HmatInv(3,1)*d(1) + HmatInv(3,2)*d(2) + HmatInv(3,3)*d(3) |
1564 |
> |
|
1565 |
|
! wrap the scaled coordinates |
1566 |
|
|
1567 |
< |
scaled = scaled - anint(scaled) |
1567 |
> |
scaled(1) = scaled(1) - anint(scaled(1), kind=dp) |
1568 |
> |
scaled(2) = scaled(2) - anint(scaled(2), kind=dp) |
1569 |
> |
scaled(3) = scaled(3) - anint(scaled(3), kind=dp) |
1570 |
|
|
1223 |
– |
|
1571 |
|
! calc the wrapped real coordinates from the wrapped scaled |
1572 |
|
! coordinates |
1573 |
+ |
! d = matmul(Hmat,scaled) |
1574 |
+ |
d(1)= Hmat(1,1)*scaled(1) + Hmat(1,2)*scaled(2) + Hmat(1,3)*scaled(3) |
1575 |
+ |
d(2)= Hmat(2,1)*scaled(1) + Hmat(2,2)*scaled(2) + Hmat(2,3)*scaled(3) |
1576 |
+ |
d(3)= Hmat(3,1)*scaled(1) + Hmat(3,2)*scaled(2) + Hmat(3,3)*scaled(3) |
1577 |
|
|
1227 |
– |
d = matmul(Hmat,scaled) |
1228 |
– |
|
1578 |
|
else |
1579 |
|
! calc the scaled coordinates. |
1580 |
|
|
1581 |
< |
do i = 1, 3 |
1582 |
< |
scaled(i) = d(i) * HmatInv(i,i) |
1583 |
< |
|
1584 |
< |
! wrap the scaled coordinates |
1585 |
< |
|
1586 |
< |
scaled(i) = scaled(i) - anint(scaled(i)) |
1581 |
> |
scaled(1) = d(1) * HmatInv(1,1) |
1582 |
> |
scaled(2) = d(2) * HmatInv(2,2) |
1583 |
> |
scaled(3) = d(3) * HmatInv(3,3) |
1584 |
> |
|
1585 |
> |
! wrap the scaled coordinates |
1586 |
> |
|
1587 |
> |
scaled(1) = scaled(1) - anint(scaled(1), kind=dp) |
1588 |
> |
scaled(2) = scaled(2) - anint(scaled(2), kind=dp) |
1589 |
> |
scaled(3) = scaled(3) - anint(scaled(3), kind=dp) |
1590 |
|
|
1591 |
< |
! calc the wrapped real coordinates from the wrapped scaled |
1592 |
< |
! coordinates |
1591 |
> |
! calc the wrapped real coordinates from the wrapped scaled |
1592 |
> |
! coordinates |
1593 |
|
|
1594 |
< |
d(i) = scaled(i)*Hmat(i,i) |
1595 |
< |
enddo |
1594 |
> |
d(1) = scaled(1)*Hmat(1,1) |
1595 |
> |
d(2) = scaled(2)*Hmat(2,2) |
1596 |
> |
d(3) = scaled(3)*Hmat(3,3) |
1597 |
> |
|
1598 |
|
endif |
1599 |
|
|
1600 |
|
endif |
1601 |
|
|
1602 |
< |
r_sq = dot_product(d,d) |
1602 |
> |
r_sq = d(1)*d(1) + d(2)*d(2) + d(3)*d(3) |
1603 |
|
|
1604 |
|
end subroutine get_interatomic_vector |
1605 |
|
|
1631 |
|
pot_Col = 0.0_dp |
1632 |
|
pot_Temp = 0.0_dp |
1633 |
|
|
1280 |
– |
rf_Row = 0.0_dp |
1281 |
– |
rf_Col = 0.0_dp |
1282 |
– |
rf_Temp = 0.0_dp |
1283 |
– |
|
1634 |
|
#endif |
1635 |
|
|
1636 |
|
if (FF_uses_EAM .and. SIM_uses_EAM) then |
1637 |
|
call clean_EAM() |
1638 |
|
endif |
1639 |
|
|
1290 |
– |
rf = 0.0_dp |
1291 |
– |
tau_Temp = 0.0_dp |
1292 |
– |
virial_Temp = 0.0_dp |
1640 |
|
end subroutine zero_work_arrays |
1641 |
|
|
1642 |
|
function skipThisPair(atom1, atom2) result(skip_it) |
1728 |
|
|
1729 |
|
function FF_RequiresPrepairCalc() result(doesit) |
1730 |
|
logical :: doesit |
1731 |
< |
doesit = FF_uses_EAM |
1731 |
> |
doesit = FF_uses_EAM .or. FF_uses_SC & |
1732 |
> |
.or. FF_uses_MEAM |
1733 |
|
end function FF_RequiresPrepairCalc |
1734 |
|
|
1387 |
– |
function FF_RequiresPostpairCalc() result(doesit) |
1388 |
– |
logical :: doesit |
1389 |
– |
doesit = FF_uses_RF |
1390 |
– |
if (corrMethod == 3) doesit = .true. |
1391 |
– |
end function FF_RequiresPostpairCalc |
1392 |
– |
|
1735 |
|
#ifdef PROFILE |
1736 |
|
function getforcetime() result(totalforcetime) |
1737 |
|
real(kind=dp) :: totalforcetime |
1741 |
|
|
1742 |
|
!! This cleans componets of force arrays belonging only to fortran |
1743 |
|
|
1744 |
< |
subroutine add_stress_tensor(dpair, fpair) |
1744 |
> |
subroutine add_stress_tensor(dpair, fpair, tau) |
1745 |
|
|
1746 |
|
real( kind = dp ), dimension(3), intent(in) :: dpair, fpair |
1747 |
+ |
real( kind = dp ), dimension(9), intent(inout) :: tau |
1748 |
|
|
1749 |
|
! because the d vector is the rj - ri vector, and |
1750 |
|
! because fx, fy, fz are the force on atom i, we need a |
1751 |
|
! negative sign here: |
1752 |
|
|
1753 |
< |
tau_Temp(1) = tau_Temp(1) - dpair(1) * fpair(1) |
1754 |
< |
tau_Temp(2) = tau_Temp(2) - dpair(1) * fpair(2) |
1755 |
< |
tau_Temp(3) = tau_Temp(3) - dpair(1) * fpair(3) |
1756 |
< |
tau_Temp(4) = tau_Temp(4) - dpair(2) * fpair(1) |
1757 |
< |
tau_Temp(5) = tau_Temp(5) - dpair(2) * fpair(2) |
1758 |
< |
tau_Temp(6) = tau_Temp(6) - dpair(2) * fpair(3) |
1759 |
< |
tau_Temp(7) = tau_Temp(7) - dpair(3) * fpair(1) |
1760 |
< |
tau_Temp(8) = tau_Temp(8) - dpair(3) * fpair(2) |
1761 |
< |
tau_Temp(9) = tau_Temp(9) - dpair(3) * fpair(3) |
1753 |
> |
tau(1) = tau(1) - dpair(1) * fpair(1) |
1754 |
> |
tau(2) = tau(2) - dpair(1) * fpair(2) |
1755 |
> |
tau(3) = tau(3) - dpair(1) * fpair(3) |
1756 |
> |
tau(4) = tau(4) - dpair(2) * fpair(1) |
1757 |
> |
tau(5) = tau(5) - dpair(2) * fpair(2) |
1758 |
> |
tau(6) = tau(6) - dpair(2) * fpair(3) |
1759 |
> |
tau(7) = tau(7) - dpair(3) * fpair(1) |
1760 |
> |
tau(8) = tau(8) - dpair(3) * fpair(2) |
1761 |
> |
tau(9) = tau(9) - dpair(3) * fpair(3) |
1762 |
|
|
1420 |
– |
virial_Temp = virial_Temp + & |
1421 |
– |
(tau_Temp(1) + tau_Temp(5) + tau_Temp(9)) |
1422 |
– |
|
1763 |
|
end subroutine add_stress_tensor |
1764 |
|
|
1765 |
|
end module doForces |