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root/group/trunk/OOPSE-4/src/applications/dump2Xyz/Dump2XYZ.cpp
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Comparing trunk/OOPSE-4/src/applications/dump2Xyz/Dump2XYZ.cpp (file contents):
Revision 2163 by tim, Mon Apr 11 20:54:53 2005 UTC vs.
Revision 2581 by xsun, Thu Feb 2 15:49:42 2006 UTC

# Line 1 | Line 1
1 < /*
1 > /*
2   * Copyright (c) 2005 The University of Notre Dame. All Rights Reserved.
3   *
4   * The University of Notre Dame grants you ("Licensee") a
# Line 57 | Line 57
57   #include "selection/SelectionEvaluator.hpp"
58   #include "selection/SelectionManager.hpp"
59   #include "visitors/LipidTransVisitor.hpp"
60 + #include "visitors/AtomNameVisitor.hpp"
61  
62   using namespace oopse;
63  
# Line 99 | Line 100 | int main(int argc, char* argv[]){
100    
101    
102    
103 <  //creat visitor list
103 >  //create visitor list
104    CompositeVisitor* compositeVisitor = new CompositeVisitor();
105      
106 <  //creat RigidBody Visitor
106 >  //create RigidBody Visitor
107    if(args_info.rigidbody_flag){
108      RBCOMVisitor* rbCOMVisitor = new RBCOMVisitor(info);
109      compositeVisitor->addVisitor(rbCOMVisitor, 900);
110    }
111    
112 <  //creat SSD atom visitor
112 >  //create SSD atom visitor
113    SSDAtomVisitor* ssdVisitor = new SSDAtomVisitor(info);
114    compositeVisitor->addVisitor(ssdVisitor, 800);
115    
116    LinearAtomVisitor* linearVisitor = new LinearAtomVisitor(info);
117    compositeVisitor->addVisitor(linearVisitor, 750);
118    
119 <  //creat default atom visitor
119 >  GBLipidAtomVisitor* gbLipidVisitor = new GBLipidAtomVisitor(info);
120 >  compositeVisitor->addVisitor(gbLipidVisitor, 740);
121 >
122 >  //create default atom visitor
123    DefaultAtomVisitor* defaultAtomVisitor = new DefaultAtomVisitor(info);
124    compositeVisitor->addVisitor(defaultAtomVisitor, 700);
125    
126 <  //creat waterType visitor
126 >  //create waterType visitor
127    if(args_info.watertype_flag){
128      WaterTypeVisitor* waterTypeVisitor = new WaterTypeVisitor;
129      compositeVisitor->addVisitor(waterTypeVisitor, 600);
130    }
131 +
132 +  if (args_info.basetype_flag) {
133 +      AtomNameVisitor* atomNameVisitor = new AtomNameVisitor(info);
134 +      compositeVisitor->addVisitor(atomNameVisitor, 550);
135 +
136 +  }
137    
138    //create ZconsVisitor
139    if(args_info.zconstraint_flag){
# Line 137 | Line 147 | int main(int argc, char* argv[]){
147      }
148    }
149    
150 <  //creat wrapping visitor
150 >  //create wrapping visitor
151    
152    if(args_info.periodicBox_flag){
153      WrappingVisitor* wrappingVisitor = new WrappingVisitor(info);
154      compositeVisitor->addVisitor(wrappingVisitor, 400);
155    }
156  
157 <  //creat replicate visitor
157 >  //create replicate visitor
158    if(args_info.repeatX_given > 0 || args_info.repeatY_given > 0 ||args_info.repeatY_given > 0){
159      Vector3i replicateOpt(args_info.repeatX_arg, args_info.repeatY_arg, args_info.repeatZ_arg);
160      ReplicateVisitor* replicateVisitor = new ReplicateVisitor(info, replicateOpt);
# Line 160 | Line 170 | int main(int argc, char* argv[]){
170      exit(1);
171    }
172      
173 <  //creat xyzVisitor
173 >  //create xyzVisitor
174    XYZVisitor* xyzVisitor;
175    if (args_info.selection_given) {
176      xyzVisitor = new XYZVisitor(info, args_info.selection_arg);
# Line 171 | Line 181 | int main(int argc, char* argv[]){
181    
182    std::cout << compositeVisitor->toString();
183    
184 <  //creat prepareVisitor
184 >  //create prepareVisitor
185    PrepareVisitor* prepareVisitor = new PrepareVisitor();
186    
187    //open dump file

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