applications/dynamicProps/ActionCorrFunc.hpp

/*
 * Copyright (c) 2005 The University of Notre Dame. All Rights Reserved.
 *
 * The University of Notre Dame grants you ("Licensee") a
 * non-exclusive, royalty free, license to use, modify and
 * redistribute this software in source and binary code form, provided
 * that the following conditions are met:
 *
 * 1. Acknowledgement of the program authors must be made in any
 *    publication of scientific results based in part on use of the
 *    program.  An acceptable form of acknowledgement is citation of
 *    the article in which the program was described (Matthew
 *    A. Meineke, Charles F. Vardeman II, Teng Lin, Christopher
 *    J. Fennell and J. Daniel Gezelter, "OOPSE: An Object-Oriented
 *    Parallel Simulation Engine for Molecular Dynamics,"
 *    J. Comput. Chem. 26, pp. 252-271 (2005))
 *
 * 2. Redistributions of source code must retain the above copyright
 *    notice, this list of conditions and the following disclaimer.
 *
 * 3. Redistributions in binary form must reproduce the above copyright
 *    notice, this list of conditions and the following disclaimer in the
 *    documentation and/or other materials provided with the
 *    distribution.
 *
 * This software is provided "AS IS," without a warranty of any
 * kind. All express or implied conditions, representations and
 * warranties, including any implied warranty of merchantability,
 * fitness for a particular purpose or non-infringement, are hereby
 * excluded.  The University of Notre Dame and its licensors shall not
 * be liable for any damages suffered by licensee as a result of
 * using, modifying or distributing the software or its
 * derivatives. In no event will the University of Notre Dame or its
 * licensors be liable for any lost revenue, profit or data, or for
 * direct, indirect, special, consequential, incidental or punitive
 * damages, however caused and regardless of the theory of liability,
 * arising out of the use of or inability to use software, even if the
 * University of Notre Dame has been advised of the possibility of
 * such damages.
 */
#ifndef APPLICATIONS_DYNAMICPROPS_ACTIONCORRFUNC_HPP
#define APPLICATIONS_DYNAMICPROPS_ACTIONCORRFUNC_HPP

#include "applications/dynamicProps/FrameTimeCorrFunc.hpp"

namespace oopse {

  class ActionCorrFunc : public FrameTimeCorrFunc {
  public:
    ActionCorrFunc(SimInfo* info, const std::string& filename, const std::string& sele1, const std::string& sele2);   
        
  private:
    virtual void correlateFrames(int frame1, int frame2);
    virtual RealType calcCorrVal(int frame1, int frame2) { return 0.0; }
    virtual void writeCorrelate();

  protected:
    virtual void preCorrelate();
    virtual void postCorrelate();
    std::vector<Mat3x3d > histogram_;
    RealType avePress_;
    RealType aveVol_;
  };

}
#endif

Revision:	3235
Committed:	Tue Oct 2 12:05:25 2007 UTC (16 years, 11 months ago) by xsun
File size:	2808 byte(s)
Log Message:	Added: Action Correlation function (for viscosity), Directional RCorr (for non-spherical bodies) Modified: LCorr (for multiple axes)
#	User	Rev	Content
1	xsun	3235	/*
2			* Copyright (c) 2005 The University of Notre Dame. All Rights Reserved.
3			*
4			* The University of Notre Dame grants you ("Licensee") a
5			* non-exclusive, royalty free, license to use, modify and
6			* redistribute this software in source and binary code form, provided
7			* that the following conditions are met:
8			*
9			* 1. Acknowledgement of the program authors must be made in any
10			* publication of scientific results based in part on use of the
11			* program. An acceptable form of acknowledgement is citation of
12			* the article in which the program was described (Matthew
13			* A. Meineke, Charles F. Vardeman II, Teng Lin, Christopher
14			* J. Fennell and J. Daniel Gezelter, "OOPSE: An Object-Oriented
15			* Parallel Simulation Engine for Molecular Dynamics,"
16			* J. Comput. Chem. 26, pp. 252-271 (2005))
17			*
18			* 2. Redistributions of source code must retain the above copyright
19			* notice, this list of conditions and the following disclaimer.
20			*
21			* 3. Redistributions in binary form must reproduce the above copyright
22			* notice, this list of conditions and the following disclaimer in the
23			* documentation and/or other materials provided with the
24			* distribution.
25			*
26			* This software is provided "AS IS," without a warranty of any
27			* kind. All express or implied conditions, representations and
28			* warranties, including any implied warranty of merchantability,
29			* fitness for a particular purpose or non-infringement, are hereby
30			* excluded. The University of Notre Dame and its licensors shall not
31			* be liable for any damages suffered by licensee as a result of
32			* using, modifying or distributing the software or its
33			* derivatives. In no event will the University of Notre Dame or its
34			* licensors be liable for any lost revenue, profit or data, or for
35			* direct, indirect, special, consequential, incidental or punitive
36			* damages, however caused and regardless of the theory of liability,
37			* arising out of the use of or inability to use software, even if the
38			* University of Notre Dame has been advised of the possibility of
39			* such damages.
40			*/
41			#ifndef APPLICATIONS_DYNAMICPROPS_ACTIONCORRFUNC_HPP
42			#define APPLICATIONS_DYNAMICPROPS_ACTIONCORRFUNC_HPP
43
44			#include "applications/dynamicProps/FrameTimeCorrFunc.hpp"
45
46			namespace oopse {
47
48			class ActionCorrFunc : public FrameTimeCorrFunc {
49			public:
50			ActionCorrFunc(SimInfo* info, const std::string& filename, const std::string& sele1, const std::string& sele2);
51
52			private:
53			virtual void correlateFrames(int frame1, int frame2);
54			virtual RealType calcCorrVal(int frame1, int frame2) { return 0.0; }
55			virtual void writeCorrelate();
56
57			protected:
58			virtual void preCorrelate();
59			virtual void postCorrelate();
60			std::vector<Mat3x3d > histogram_;
61			RealType avePress_;
62			RealType aveVol_;
63			};
64
65			}
66			#endif
67