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root/group/trunk/OOPSE-4/src/applications/staticProps/StaticProps.cpp
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Comparing trunk/OOPSE-4/src/applications/staticProps/StaticProps.cpp (file contents):
Revision 1994 by tim, Thu Feb 10 18:14:03 2005 UTC vs.
Revision 2753 by gezelter, Tue May 16 20:38:23 2006 UTC

# Line 1 | Line 1
1 < /*
1 > /*
2   * Copyright (c) 2005 The University of Notre Dame. All Rights Reserved.
3   *
4   * The University of Notre Dame grants you ("Licensee") a
# Line 43 | Line 43
43   #include <fstream>
44   #include <string>
45  
46 – #include "applications/staticProps/StaticPropsCmd.h"
46   #include "brains/Register.hpp"
47   #include "brains/SimCreator.hpp"
48   #include "brains/SimInfo.hpp"
49   #include "io/DumpReader.hpp"
50   #include "utils/simError.h"
51  
52 + #include "applications/staticProps/StaticPropsCmd.h"
53 + #include "applications/staticProps/StaticAnalyser.hpp"
54 + #include "applications/staticProps/GofR.hpp"
55 + #include "applications/staticProps/GofRAngle.hpp"
56 + #include "applications/staticProps/GofAngle2.hpp"
57 + #include "applications/staticProps/GofXyz.hpp"
58 + #include "applications/staticProps/P2OrderParameter.hpp"
59 + #include "applications/staticProps/SCDOrderParameter.hpp"
60 + #include "applications/staticProps/DensityPlot.hpp"
61 + #include "applications/staticProps/RhoZ.hpp"
62 + #if defined(HAVE_FFTW_H) || defined(HAVE_DFFTW_H) || defined(HAVE_FFTW3_H)
63 + #include "applications/staticProps/Hxy.hpp"
64 + #endif
65 +
66   using namespace oopse;
67  
68   int main(int argc, char* argv[]){
69    
70 <    //register force fields
71 <    registerForceFields();
70 >  //register force fields
71 >  registerForceFields();
72  
73 <    gengetopt_args_info args_info;
73 >  gengetopt_args_info args_info;
74  
75 <    //parse the command line option
76 <    if (cmdline_parser (argc, argv, &args_info) != 0) {
77 <        exit(1) ;
78 <    }
75 >  //parse the command line option
76 >  if (cmdline_parser (argc, argv, &args_info) != 0) {
77 >    exit(1) ;
78 >  }
79  
80  
81 <    //get the dumpfile name and meta-data file name
82 <    std::string dumpFileName = args_info.input_arg;
81 >  //get the dumpfile name and meta-data file name
82 >  std::string dumpFileName = args_info.input_arg;
83  
84 <    std::string mdFileName = dumpFileName.substr(0, dumpFileName.rfind(".")) + ".md";
84 >  std::string mdFileName = dumpFileName.substr(0, dumpFileName.rfind(".")) + ".md";
85  
86      
87 <    //parse md file and set up the system
88 <    SimCreator creator;
76 <    SimInfo* info = creator.createSim(mdFileName, false);
87 >  std::string sele1;
88 >  std::string sele2;
89  
90 +  if (args_info.sele1_given) {
91 +    sele1 = args_info.sele1_arg;
92 +  }else {
93 +    char*  sele1Env= getenv("OOPSE_SELE1");
94 +    if (sele1Env) {
95 +      sele1 = sele1Env;
96 +    }else if (!args_info.scd_given) {
97 +      sprintf( painCave.errMsg,
98 +               "neither --sele1 option nor $OOPSE_SELE1 is set");
99 +      painCave.severity = OOPSE_ERROR;
100 +      painCave.isFatal = 1;
101 +      simError();
102 +    }
103 +  }
104 +    
105 +  if (args_info.sele2_given) {
106 +    sele2 = args_info.sele2_arg;
107 +  }else {
108 +    char* sele2Env = getenv("OOPSE_SELE2");
109 +    if (sele2Env) {
110 +      sele2 = sele2Env;            
111 +    } else if (args_info.density_given) {
112 +      sele2 = "select all";
113 +    } else if(!args_info.scd_given && !args_info.density_given && !args_info.slab_density_given)  {
114 +      sprintf( painCave.errMsg,
115 +               "neither --sele2 option nor $OOPSE_SELE2 is set");
116 +      painCave.severity = OOPSE_ERROR;
117 +      painCave.isFatal = 1;
118 +      simError();        
119 +    }
120 +  }
121  
122 <    std::string sele1;
123 <    std::string sele2;
122 >  bool batchMode;
123 >  if (args_info.scd_given){
124 >    if (args_info.sele1_given && args_info.sele2_given && args_info.sele3_given) {
125 >        batchMode = false;
126 >    } else if (args_info.molname_given && args_info.begin_given && args_info.end_given) {
127 >        if (args_info.begin_arg < 0 || args_info.end_arg < 0 || args_info.begin_arg > args_info.end_arg-2) {
128 >            sprintf( painCave.errMsg,
129 >                     "below conditions are not satisfied:\n"
130 >                     "0 <= begin && 0<= end && begin <= end-2\n");
131 >            painCave.severity = OOPSE_ERROR;
132 >            painCave.isFatal = 1;
133 >            simError();                    
134 >        }
135 >        batchMode = true;        
136 >    } else{
137 >        sprintf( painCave.errMsg,
138 >                 "either --sele1, --sele2, --sele3 are specified,"
139 >                 " or --molname, --begin, --end are specified\n");
140 >        painCave.severity = OOPSE_ERROR;
141 >        painCave.isFatal = 1;
142 >        simError();        
143 >    
144 >    }
145 >  }
146  
147 <    if (args_info.sele1_given) {
148 <        sele1 = args_info.sele1_arg;
149 <    }else {
147 >  //parse md file and set up the system
148 >  SimCreator creator;
149 >  SimInfo* info = creator.createSim(mdFileName);
150  
151 <    }
152 <    if (args_info.sele1_given) {
153 <        sele1 = args_info.sele1_arg;
154 <    }else {
151 >  double maxLen;
152 >  if (args_info.length_given) {
153 >    maxLen = args_info.length_arg;
154 >  } else {
155 >    Mat3x3d hmat = info->getSnapshotManager()->getCurrentSnapshot()->getHmat();
156 >    maxLen = std::min(std::min(hmat(0, 0), hmat(1, 1)), hmat(2, 2)) /2.0;        
157 >  }    
158  
159 +  StaticAnalyser* analyser;
160 +  if (args_info.gofr_given){
161 +    analyser= new GofR(info, dumpFileName, sele1, sele2, maxLen, args_info.nrbins_arg);        
162 +  } else if (args_info.r_theta_given) {
163 +    analyser  = new GofRTheta(info, dumpFileName, sele1, sele2, maxLen, args_info.nrbins_arg, args_info.nanglebins_arg);
164 +  } else if (args_info.r_omega_given) {
165 +    analyser  = new GofROmega(info, dumpFileName, sele1, sele2, maxLen, args_info.nrbins_arg, args_info.nanglebins_arg);
166 +  } else if (args_info.theta_omega_given) {
167 +    analyser  = new GofAngle2(info, dumpFileName, sele1, sele2, args_info.nanglebins_arg);
168 +  } else if (args_info.gxyz_given) {
169 +    if (args_info.refsele_given) {
170 +      analyser= new GofXyz(info, dumpFileName, sele1, sele2,args_info.refsele_arg, maxLen, args_info.nrbins_arg);        
171 +    } else {
172 +      sprintf( painCave.errMsg,
173 +               "--refsele must set when --gxyz is used");
174 +      painCave.severity = OOPSE_ERROR;
175 +      painCave.isFatal = 1;
176 +      simError();  
177      }
178 +  } else if (args_info.p2_given) {
179 +      analyser  = new P2OrderParameter(info, dumpFileName, sele1, sele2);
180 +  } else if (args_info.scd_given) {
181 +      if (batchMode) {
182 +          analyser  = new SCDOrderParameter(info, dumpFileName, args_info.molname_arg,
183 +            args_info.begin_arg, args_info.end_arg);
184 +      } else{
185 +          std::string sele3 = args_info.sele3_arg;
186 +          analyser  = new SCDOrderParameter(info, dumpFileName, sele1, sele2, sele3);
187 +      }
188 +  }else if (args_info.density_given) {
189 +      analyser= new DensityPlot(info, dumpFileName, sele1, sele2, maxLen, args_info.nrbins_arg);  
190 +  } else if (args_info.slab_density_given) {
191 +      Mat3x3d hmat = info->getSnapshotManager()->getCurrentSnapshot()->getHmat();
192 +      analyser = new RhoZ(info, dumpFileName, sele1, hmat(2, 2), args_info.nrbins_arg);
193 + #if defined(HAVE_FFTW_H) || defined(HAVE_DFFTW_H) || defined(HAVE_FFTW3_H)
194 +  }else if (args_info.hxy_given) {
195 +    analyser = new Hxy(info, dumpFileName, sele1, args_info.nbins_x_arg, args_info.nbins_y_arg, args_info.nrbins_arg);
196 + #endif
197 +  }
198      
199 <    GofR rdf(info, dumpFileName, sele1, sele2, args_info.length_arg);
199 >  if (args_info.output_given) {
200 >    analyser->setOutputName(args_info.output_arg);
201 >  }
202 >  if (args_info.step_given) {
203 >    analyser->setStep(args_info.step_arg);
204 >  }
205  
206 <    if (args_info.nbins_given) {
96 <        rdf.setNBins(args_info.nbins_arg);
97 <    }
206 >  analyser->process();
207  
208 <    rdf.process();
209 <    
101 <    delete info;
208 >  delete analyser;    
209 >  delete info;
210  
211 <    return 0;  
211 >  return 0;  
212   }
213  

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