Added support for nanoparticle density profile.
Mostly done with BondOrderParameter. Only a few performance tweaks remain
fixing bond order parameter code
fixed bugs (mostly in BondOrderParameter)
Working on BondOrderParameter
Changing utility programs to use the new file format
Add the RippleOP to calculate the orderparameter of the ripples.
Adding single precision capabilities to c++ side
Autoconf fixes for FFTW. Multiple FFTW version support.
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Changes to calculate undulation spectrum
fixing RhoZ
working version of DensityPlot
adding DensityPlot into StaticProps
adding SCDOrderParameter into StaticProps
adding AtomNameVisitor to convert atom name to its base name; wrappingvisitor now wrap back to the center of the mass; adding P2OrderParameter into StaticProps
xemacs has been drafted to perform our indentation services
adding LipidTransVisitor, GofXyz is working now
change the default bin number
default length for staticProps is 1/2 smallest length of first frame
maximum length defaults to the cutoff radius
more work in StaticProps
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