12 |
|
option "nrbins" r "number of bins for distance" int default="100" no |
13 |
|
option "nanglebins" a "number of bins for cos(angle)" int default="50" no |
14 |
|
option "length" l "maximum length (Defaults to 1/2 smallest length of first frame)" double no |
15 |
< |
option "sele1" - "select first stuntdouble set" string typestr="selection script" no |
16 |
< |
option "sele2" - "select second stuntdouble set" string typestr="selection script" no |
17 |
< |
option "refsele" - "select reference (use and only use with --gxyz)" string typestr="selection script" no |
15 |
> |
option "sele1" - "select the first stuntdouble set" string typestr="selection script" no |
16 |
> |
option "sele2" - "select the second stuntdouble set" string typestr="selection script" no |
17 |
> |
option "sele3" - "select the third stuntdouble set" string typestr="selection script" no |
18 |
> |
option "refsele" - "select reference (use and only use with --gxyz)" string typestr="selection script" no |
19 |
> |
option "molname" - "molecule name" string no |
20 |
> |
option "begin" - "begin interanl index" int no |
21 |
> |
option "end" - "end internal index" int no |
22 |
|
defgroup "staticProps" groupdesc=" an option of this group is required" yes |
23 |
|
groupoption "gofr" - "g(r)" group="staticProps" |
24 |
|
groupoption "r_theta" - "g(r, cos(theta))" group="staticProps" |
25 |
|
groupoption "r_omega" - "g(r, cos(omega))" group="staticProps" |
26 |
|
groupoption "theta_omega" - "g(cos(theta), cos(omega))" group="staticProps" |
27 |
|
groupoption "gxyz" - "g(x, y, z)" group="staticProps" |
28 |
+ |
groupoption "p2" - "p2 order parameter (--sele1 and --sele2 must be specified)" group="staticProps" |
29 |
+ |
groupoption "scd" - "scd order parameter(either --sele1, --sele2, --sele3 are specified or --molname, --begin, --end are specified)" group="staticProps" |
30 |
+ |
groupoption "density" - "density plot (--sele1 must be specified)" group="staticProps" |