src/brains/BlockSnapshotManager.hpp

/*
 * Copyright (c) 2005 The University of Notre Dame. All Rights Reserved.
 *
 * The University of Notre Dame grants you ("Licensee") a
 * non-exclusive, royalty free, license to use, modify and
 * redistribute this software in source and binary code form, provided
 * that the following conditions are met:
 *
 * 1. Acknowledgement of the program authors must be made in any
 *    publication of scientific results based in part on use of the
 *    program.  An acceptable form of acknowledgement is citation of
 *    the article in which the program was described (Matthew
 *    A. Meineke, Charles F. Vardeman II, Teng Lin, Christopher
 *    J. Fennell and J. Daniel Gezelter, "OOPSE: An Object-Oriented
 *    Parallel Simulation Engine for Molecular Dynamics,"
 *    J. Comput. Chem. 26, pp. 252-271 (2005))
 *
 * 2. Redistributions of source code must retain the above copyright
 *    notice, this list of conditions and the following disclaimer.
 *
 * 3. Redistributions in binary form must reproduce the above copyright
 *    notice, this list of conditions and the following disclaimer in the
 *    documentation and/or other materials provided with the
 *    distribution.
 *
 * This software is provided "AS IS," without a warranty of any
 * kind. All express or implied conditions, representations and
 * warranties, including any implied warranty of merchantability,
 * fitness for a particular purpose or non-infringement, are hereby
 * excluded.  The University of Notre Dame and its licensors shall not
 * be liable for any damages suffered by licensee as a result of
 * using, modifying or distributing the software or its
 * derivatives. In no event will the University of Notre Dame or its
 * licensors be liable for any lost revenue, profit or data, or for
 * direct, indirect, special, consequential, incidental or punitive
 * damages, however caused and regardless of the theory of liability,
 * arising out of the use of or inability to use software, even if the
 * University of Notre Dame has been advised of the possibility of
 * such damages.
 */
#ifndef BRAINS_BLOCKSNAPSHOTMANAGER_HPP
#define BRAINS_BLOCKSNAPSHOTMANAGER_HPP
#include <vector>

#include "brains/SnapshotManager.hpp"
namespace oopse {

  class SimInfo;
  class DumpReader;

  typedef std::pair<int, int> SnapshotBlock;

  /**
   * @class BlockSnapshotManager
   * @todo document
   */
  class BlockSnapshotManager : public SnapshotManager{

  public:
    BlockSnapshotManager(SimInfo* info, const std::string& filename, int storageLayout, int blockCapacity = 2);
    ~BlockSnapshotManager();
        
    virtual Snapshot* getSnapshot(int id) { return snapshots_[id]; }

    /** Returns number of snapshot blocks in this BlockSnapshotManager*/
    int getNBlocks() {
      return blocks_.size();
    }

    SnapshotBlock getSnapshotBlock(int block) {
      return blocks_.at(block);
    }
        
    int getNActiveBlocks();

    void needCOMprops(bool ncp);


    bool isBlockActive(int block) {
      return  findActiveBlock(block) != activeBlocks_.end() ? true : false;
    }        

    bool loadBlock(int block);
        
    bool unloadBlock(int block);

    std::vector<int> getActiveBlocks();

    int getBlockCapacity() {
      return blockCapacity_;                
    }

    int getNFrames();
        
  private:

    std::vector<int>::iterator findActiveBlock(int block) {
      return std::find(activeBlocks_.begin(), activeBlocks_.end(), block);
    }

    bool hasZeroRefBlock();

    int getFirstZeroRefBlock();

    void internalLoad(int block);
    void internalUnload(int block);
    Snapshot* loadFrame(int frame);
        
    SimInfo* info_;
    int blockCapacity_;

    std::vector<Snapshot*> snapshots_;
    std::vector<SnapshotBlock> blocks_;        
    std::vector<int> activeBlocks_;
    std::vector<int> activeRefCount_;
        
    int nAtoms_;
    int nRigidBodies_;
    
    DumpReader* reader_;
    int nframes_;
    int nSnapshotPerBlock_;

  };

}

#endif
Revision:	3104
Committed:	Fri Dec 29 21:57:10 2006 UTC (17 years, 8 months ago) by gezelter
File size:	3989 byte(s)
Log Message:	Fixing an implementation problem
#	User	Rev	Content
1	tim	2002	/*
2			* Copyright (c) 2005 The University of Notre Dame. All Rights Reserved.
3			*
4			* The University of Notre Dame grants you ("Licensee") a
5			* non-exclusive, royalty free, license to use, modify and
6			* redistribute this software in source and binary code form, provided
7			* that the following conditions are met:
8			*
9			* 1. Acknowledgement of the program authors must be made in any
10			* publication of scientific results based in part on use of the
11			* program. An acceptable form of acknowledgement is citation of
12			* the article in which the program was described (Matthew
13			* A. Meineke, Charles F. Vardeman II, Teng Lin, Christopher
14			* J. Fennell and J. Daniel Gezelter, "OOPSE: An Object-Oriented
15			* Parallel Simulation Engine for Molecular Dynamics,"
16			* J. Comput. Chem. 26, pp. 252-271 (2005))
17			*
18			* 2. Redistributions of source code must retain the above copyright
19			* notice, this list of conditions and the following disclaimer.
20			*
21			* 3. Redistributions in binary form must reproduce the above copyright
22			* notice, this list of conditions and the following disclaimer in the
23			* documentation and/or other materials provided with the
24			* distribution.
25			*
26			* This software is provided "AS IS," without a warranty of any
27			* kind. All express or implied conditions, representations and
28			* warranties, including any implied warranty of merchantability,
29			* fitness for a particular purpose or non-infringement, are hereby
30			* excluded. The University of Notre Dame and its licensors shall not
31			* be liable for any damages suffered by licensee as a result of
32			* using, modifying or distributing the software or its
33			* derivatives. In no event will the University of Notre Dame or its
34			* licensors be liable for any lost revenue, profit or data, or for
35			* direct, indirect, special, consequential, incidental or punitive
36			* damages, however caused and regardless of the theory of liability,
37			* arising out of the use of or inability to use software, even if the
38			* University of Notre Dame has been advised of the possibility of
39			* such damages.
40			*/
41			#ifndef BRAINS_BLOCKSNAPSHOTMANAGER_HPP
42			#define BRAINS_BLOCKSNAPSHOTMANAGER_HPP
43	tim	2007	#include <vector>
44	tim	2002
45			#include "brains/SnapshotManager.hpp"
46			namespace oopse {
47
48	gezelter	2204	class SimInfo;
49			class DumpReader;
50	tim	2002
51	gezelter	2204	typedef std::pair<int, int> SnapshotBlock;
52	tim	2002
53	gezelter	2204	/**
54			* @class BlockSnapshotManager
55			* @todo document
56			*/
57			class BlockSnapshotManager : public SnapshotManager{
58	tim	2002
59	gezelter	2204	public:
60			BlockSnapshotManager(SimInfo* info, const std::string& filename, int storageLayout, int blockCapacity = 2);
61			~BlockSnapshotManager();
62	tim	2002
63	gezelter	2204	virtual Snapshot* getSnapshot(int id) { return snapshots_[id]; }
64	tim	2002
65	gezelter	2204	/** Returns number of snapshot blocks in this BlockSnapshotManager*/
66			int getNBlocks() {
67			return blocks_.size();
68			}
69	tim	2002
70	gezelter	2204	SnapshotBlock getSnapshotBlock(int block) {
71			return blocks_.at(block);
72			}
73	tim	2002
74	gezelter	2204	int getNActiveBlocks();
75	tim	2035
76	gezelter	3104	void needCOMprops(bool ncp);
77
78
79	gezelter	2204	bool isBlockActive(int block) {
80			return findActiveBlock(block) != activeBlocks_.end() ? true : false;
81			}
82	tim	2035
83	gezelter	2204	bool loadBlock(int block);
84	tim	2002
85	gezelter	2204	bool unloadBlock(int block);
86	tim	2002
87	gezelter	2204	std::vector<int> getActiveBlocks();
88	tim	2002
89	gezelter	2204	int getBlockCapacity() {
90			return blockCapacity_;
91			}
92	tim	2002
93	gezelter	2204	int getNFrames();
94	tim	2002
95	gezelter	2204	private:
96	tim	2002
97	gezelter	2204	std::vector<int>::iterator findActiveBlock(int block) {
98			return std::find(activeBlocks_.begin(), activeBlocks_.end(), block);
99			}
100	tim	2035
101	gezelter	2204	bool hasZeroRefBlock();
102	tim	2035
103	gezelter	2204	int getFirstZeroRefBlock();
104	tim	2035
105	gezelter	2204	void internalLoad(int block);
106			void internalUnload(int block);
107			Snapshot* loadFrame(int frame);
108	tim	2002
109	gezelter	2204	SimInfo* info_;
110			int blockCapacity_;
111	tim	2002
112	gezelter	2204	std::vector<Snapshot*> snapshots_;
113			std::vector<SnapshotBlock> blocks_;
114			std::vector<int> activeBlocks_;
115			std::vector<int> activeRefCount_;
116	tim	2002
117	gezelter	2204	int nAtoms_;
118			int nRigidBodies_;
119	tim	2002
120	gezelter	2204	DumpReader* reader_;
121			int nframes_;
122			int nSnapshotPerBlock_;
123	tim	2002
124	gezelter	2204	};
125	tim	2002
126			}
127
128			#endif