 ../
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Makefile.in
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3554
(14 years ago)
by gezelter:
Removing CGAL from all code
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SMIPDForceManager.cpp
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3550
(14 years ago)
by gezelter:
fixed a bug confusing id with localID, stopped adding NULLS to triangles also.
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RNEMD.hpp
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3541
(14 years ago)
by skuang:
added RNEMD scaling
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VelocityVerletIntegrator.cpp
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3541
(14 years ago)
by skuang:
added RNEMD scaling
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Integrator.cpp
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3541
(14 years ago)
by skuang:
added RNEMD scaling
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RNEMD.cpp
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3541
(14 years ago)
by skuang:
added RNEMD scaling
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Integrator.hpp
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3541
(14 years ago)
by skuang:
added RNEMD scaling
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VelocityVerletIntegrator.hpp
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3520
(14 years ago)
by cli2:
Added new restraint infrastructure
Added MolecularRestraints
Added ObjectRestraints
Added RestraintStamp
Updated thermodynamic integration to use ObjectRestraints
Added Quaternion mathematics for twist swing decompositions
Significantly updated RestWriter and RestReader to use dump-like files
Added selections for x, y, and z coordinates of atoms
Removed monolithic Restraints class
Fixed a few bugs in gradients of Euler angles in DirectionalAtom and RigidBody
Added some rotational capabilities to prinicpalAxisCalculator
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SMIPDForceManager.hpp
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3517
(14 years ago)
by gezelter:
New hotness
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NgammaT.cpp
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3516
(14 years ago)
by gezelter:
units for thermalConductivity, spelling error fixed
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NPrT.cpp
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3516
(14 years ago)
by gezelter:
units for thermalConductivity, spelling error fixed
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DLM.cpp
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3499
(15 years ago)
by gezelter:
bug fix in DLM, added temperature profiles and uniform bins to RNEMD
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SMIPDynamics.cpp
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3481
(15 years ago)
by gezelter:
Cleaning up some cruft.
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Velocitizer.cpp
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3470
(15 years ago)
by gezelter:
General bug-fixes and other changes to make particle pots work with
the Helfand Energy correlation function
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NVE.cpp
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3463
(15 years ago)
by chuckv:
Returned old LD forces to SMIPDForceManager.
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SMIPDynamics.hpp
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3451
(15 years ago)
by chuckv:
Adding back more missing files.
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LDForceManager.cpp
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3450
(15 years ago)
by chuckv:
Added large quantities of code for convex hull and constant pressure langevin dynamics.
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NPT.cpp
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3432
(16 years ago)
by gezelter:
Changes for implementing Amber force field: Added Inversions and
worked on BaseAtomTypes so that they'd function with the fortran side.
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NVT.cpp
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3432
(16 years ago)
by gezelter:
Changes for implementing Amber force field: Added Inversions and
worked on BaseAtomTypes so that they'd function with the fortran side.
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LDForceManager.hpp
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3384
(16 years ago)
by gezelter:
Adding iterative looping to get better estimates of friction forces
from full-step velocities
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LangevinDynamics.cpp
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3384
(16 years ago)
by gezelter:
Adding iterative looping to get better estimates of friction forces
from full-step velocities
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NgammaT.hpp
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2994
(17 years ago)
by gezelter:
adding NgammaT integrator
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NPAT.cpp
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2759
(18 years ago)
by tim:
Adding single precision capabilities to c++ side
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Velocitizer.hpp
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2759
(18 years ago)
by tim:
Adding single precision capabilities to c++ side
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NPTi.hpp
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2759
(18 years ago)
by tim:
Adding single precision capabilities to c++ side
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LangevinDynamics.hpp
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2759
(18 years ago)
by tim:
Adding single precision capabilities to c++ side
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NPTxyz.cpp
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2759
(18 years ago)
by tim:
Adding single precision capabilities to c++ side
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NPrT.hpp
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2759
(18 years ago)
by tim:
Adding single precision capabilities to c++ side
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RotationAlgorithm.hpp
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2759
(18 years ago)
by tim:
Adding single precision capabilities to c++ side
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NPTxyz.hpp
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2759
(18 years ago)
by tim:
Adding single precision capabilities to c++ side
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DLM.hpp
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2759
(18 years ago)
by tim:
Adding single precision capabilities to c++ side
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NVT.hpp
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2759
(18 years ago)
by tim:
Adding single precision capabilities to c++ side
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NPAT.hpp
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2759
(18 years ago)
by tim:
Adding single precision capabilities to c++ side
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NPTf.cpp
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2759
(18 years ago)
by tim:
Adding single precision capabilities to c++ side
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NPT.hpp
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2759
(18 years ago)
by tim:
Adding single precision capabilities to c++ side
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NVE.hpp
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2759
(18 years ago)
by tim:
Adding single precision capabilities to c++ side
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NPTf.hpp
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2759
(18 years ago)
by tim:
Adding single precision capabilities to c++ side
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NPTi.cpp
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2759
(18 years ago)
by tim:
Adding single precision capabilities to c++ side
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IntegratorFactory.hpp
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2404
(18 years ago)
by chrisfen:
fixed a capitalization problem with NPT integrator initialization
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IntegratorFactory.cpp
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2204
(19 years ago)
by gezelter:
xemacs has been drafted to perform our indentation services
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IntegratorCreator.hpp
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2204
(19 years ago)
by gezelter:
xemacs has been drafted to perform our indentation services
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