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Comparing trunk/OOPSE-4/src/io/DumpReader.hpp (file contents):
Revision 2318 by tim, Wed Sep 21 20:59:31 2005 UTC vs.
Revision 2420 by chrisfen, Tue Nov 8 13:32:27 2005 UTC

# Line 1 | Line 1
1 < /*
2 < * Copyright (c) 2005 The University of Notre Dame. All Rights Reserved.
3 < *
4 < * The University of Notre Dame grants you ("Licensee") a
5 < * non-exclusive, royalty free, license to use, modify and
6 < * redistribute this software in source and binary code form, provided
7 < * that the following conditions are met:
8 < *
9 < * 1. Acknowledgement of the program authors must be made in any
10 < *    publication of scientific results based in part on use of the
11 < *    program.  An acceptable form of acknowledgement is citation of
12 < *    the article in which the program was described (Matthew
13 < *    A. Meineke, Charles F. Vardeman II, Teng Lin, Christopher
14 < *    J. Fennell and J. Daniel Gezelter, "OOPSE: An Object-Oriented
15 < *    Parallel Simulation Engine for Molecular Dynamics,"
16 < *    J. Comput. Chem. 26, pp. 252-271 (2005))
17 < *
18 < * 2. Redistributions of source code must retain the above copyright
19 < *    notice, this list of conditions and the following disclaimer.
20 < *
21 < * 3. Redistributions in binary form must reproduce the above copyright
22 < *    notice, this list of conditions and the following disclaimer in the
23 < *    documentation and/or other materials provided with the
24 < *    distribution.
25 < *
26 < * This software is provided "AS IS," without a warranty of any
27 < * kind. All express or implied conditions, representations and
28 < * warranties, including any implied warranty of merchantability,
29 < * fitness for a particular purpose or non-infringement, are hereby
30 < * excluded.  The University of Notre Dame and its licensors shall not
31 < * be liable for any damages suffered by licensee as a result of
32 < * using, modifying or distributing the software or its
33 < * derivatives. In no event will the University of Notre Dame or its
34 < * licensors be liable for any lost revenue, profit or data, or for
35 < * direct, indirect, special, consequential, incidental or punitive
36 < * damages, however caused and regardless of the theory of liability,
37 < * arising out of the use of or inability to use software, even if the
38 < * University of Notre Dame has been advised of the possibility of
39 < * such damages.
40 < */
41 <
42 < /**
43 < * @file DumpReader.hpp
44 < * @author tlin
45 < * @date 11/15/2004
46 < * @time 09:25am
47 < * @version 2.0
48 < */
49 <
50 < #ifndef IO_DUMPREADER_HPP
51 < #define IO_DUMPREADER_HPP
52 <
53 < #include <cstdio>
54 < #include <string>
55 < #include "brains/SimInfo.hpp"
56 < #include "primitives/StuntDouble.hpp"
57 < namespace oopse {
58 <
59 <  /**
60 <   * @class DumpReader DumpReader.hpp "io/DumpReader.hpp"
61 <   * @todo get rid of more junk code from DumpReader
62 <   */
63 <  class DumpReader {
64 <  public:
65 <
66 <    DumpReader(SimInfo* info, const std::string & filename);
67 <    //DumpReader(SimInfo * info, istream & is);
68 <
69 <    ~DumpReader();
70 <
71 <    /** Returns the number of frames in the dump file*/
72 <    int getNFrames();
73 <
74 <        
75 <    void readFrame(int whichFrame);
76 <
77 <  private:
78 <
79 <    void scanFile();
80 <
81 <    void readSet(int whichFrame);
82 <
83 <    void parseDumpLine(char *line, StuntDouble* integrableObject);
84 <
85 <    void parseCommentLine(char* line, Snapshot* s);
86 <
87 <
88 < #ifdef IS_MPI
89 <
90 <    void anonymousNodeDie(void);
91 <    void nodeZeroError(void);
92 <
93 < #endif                
94 <    // the maximum length of a typical MPI package is 15k
95 <    const static int maxBufferSize = 8192;
96 <        
97 <    SimInfo* info_;
98 <
99 <    std::string filename_;
100 <    bool isScanned_;
101 <
102 <    int nframes_;
103 <
104 <    std::istream* inFile_;
105 <    
106 <    std::vector<std::streampos> framePos_;
107 <
108 <    bool needPos_;
109 <    bool needVel_;
110 <    bool needQuaternion_;
111 <    bool needAngMom_;
112 <  };
113 <
114 < }      //end namespace oopse
115 <
116 < #endif //IO_DUMPREADER_HPP
1 > /*
2 > * Copyright (c) 2005 The University of Notre Dame. All Rights Reserved.
3 > *
4 > * The University of Notre Dame grants you ("Licensee") a
5 > * non-exclusive, royalty free, license to use, modify and
6 > * redistribute this software in source and binary code form, provided
7 > * that the following conditions are met:
8 > *
9 > * 1. Acknowledgement of the program authors must be made in any
10 > *    publication of scientific results based in part on use of the
11 > *    program.  An acceptable form of acknowledgement is citation of
12 > *    the article in which the program was described (Matthew
13 > *    A. Meineke, Charles F. Vardeman II, Teng Lin, Christopher
14 > *    J. Fennell and J. Daniel Gezelter, "OOPSE: An Object-Oriented
15 > *    Parallel Simulation Engine for Molecular Dynamics,"
16 > *    J. Comput. Chem. 26, pp. 252-271 (2005))
17 > *
18 > * 2. Redistributions of source code must retain the above copyright
19 > *    notice, this list of conditions and the following disclaimer.
20 > *
21 > * 3. Redistributions in binary form must reproduce the above copyright
22 > *    notice, this list of conditions and the following disclaimer in the
23 > *    documentation and/or other materials provided with the
24 > *    distribution.
25 > *
26 > * This software is provided "AS IS," without a warranty of any
27 > * kind. All express or implied conditions, representations and
28 > * warranties, including any implied warranty of merchantability,
29 > * fitness for a particular purpose or non-infringement, are hereby
30 > * excluded.  The University of Notre Dame and its licensors shall not
31 > * be liable for any damages suffered by licensee as a result of
32 > * using, modifying or distributing the software or its
33 > * derivatives. In no event will the University of Notre Dame or its
34 > * licensors be liable for any lost revenue, profit or data, or for
35 > * direct, indirect, special, consequential, incidental or punitive
36 > * damages, however caused and regardless of the theory of liability,
37 > * arising out of the use of or inability to use software, even if the
38 > * University of Notre Dame has been advised of the possibility of
39 > * such damages.
40 > */
41 >  
42 > /**
43 > * @file DumpReader.hpp
44 > * @author tlin
45 > * @date 11/15/2004
46 > * @time 09:25am
47 > * @version 2.0
48 > */
49 >
50 > #ifndef IO_DUMPREADER_HPP
51 > #define IO_DUMPREADER_HPP
52 >
53 > #include <cstdio>
54 > #include <string>
55 > #include "brains/SimInfo.hpp"
56 > #include "primitives/StuntDouble.hpp"
57 > namespace oopse {
58 >
59 >  /**
60 >   * @class DumpReader DumpReader.hpp "io/DumpReader.hpp"
61 >   * @todo get rid of more junk code from DumpReader
62 >   */
63 >  class DumpReader {
64 >  public:
65 >
66 >    DumpReader(SimInfo* info, const std::string & filename);
67 >    //DumpReader(SimInfo * info, istream & is);
68 >
69 >    ~DumpReader();
70 >
71 >    /** Returns the number of frames in the dump file*/
72 >    int getNFrames();
73 >
74 >        
75 >    void readFrame(int whichFrame);
76 >
77 >  private:
78 >
79 >    void scanFile();
80 >
81 >    void readSet(int whichFrame);
82 >
83 >    void parseDumpLine(char *line, StuntDouble* integrableObject);
84 >
85 >    void parseCommentLine(char* line, Snapshot* s);
86 >
87 >
88 > #ifdef IS_MPI
89 >
90 >    void anonymousNodeDie(void);
91 >    void nodeZeroError(void);
92 >
93 > #endif                
94 >    // the maximum length of a typical MPI package is 15k
95 >    const static int maxBufferSize = 8192;
96 >        
97 >    SimInfo* info_;
98 >
99 >    std::string filename_;
100 >    bool isScanned_;
101 >
102 >    int nframes_;
103 >
104 >    std::istream* inFile_;
105 >    
106 >    std::vector<std::streampos> framePos_;
107 >
108 >    bool needPos_;
109 >    bool needVel_;
110 >    bool needQuaternion_;
111 >    bool needAngMom_;
112 >  };
113 >
114 > }      //end namespace oopse
115 >
116 > #endif //IO_DUMPREADER_HPP

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