43 |
|
#include "primitives/Molecule.hpp" |
44 |
|
#include "utils/simError.h" |
45 |
|
#include "io/basic_teebuf.hpp" |
46 |
+ |
#include "io/gzstream.hpp" |
47 |
+ |
#include "io/Globals.hpp" |
48 |
+ |
|
49 |
|
#ifdef IS_MPI |
50 |
|
#include <mpi.h> |
51 |
|
#endif //is_mpi |
54 |
|
|
55 |
|
DumpWriter::DumpWriter(SimInfo* info) |
56 |
|
: info_(info), filename_(info->getDumpFileName()), eorFilename_(info->getFinalConfigFileName()){ |
57 |
+ |
|
58 |
+ |
Globals* simParams = info->getSimParams(); |
59 |
+ |
needCompression_ = simParams->getCompressDumpFile(); |
60 |
+ |
|
61 |
+ |
if (needCompression_) { |
62 |
+ |
filename_ += ".gz"; |
63 |
+ |
eorFilename_ += ".gz"; |
64 |
+ |
} |
65 |
+ |
|
66 |
|
#ifdef IS_MPI |
67 |
|
|
68 |
|
if (worldRank == 0) { |
69 |
|
#endif // is_mpi |
70 |
|
|
59 |
– |
dumpFile_.open(filename_.c_str(), std::ios::out | std::ios::trunc); |
71 |
|
|
72 |
+ |
dumpFile_ = createOStream(filename_); |
73 |
+ |
|
74 |
|
if (!dumpFile_) { |
75 |
|
sprintf(painCave.errMsg, "Could not open \"%s\" for dump output.\n", |
76 |
|
filename_.c_str()); |
92 |
|
|
93 |
|
DumpWriter::DumpWriter(SimInfo* info, const std::string& filename) |
94 |
|
: info_(info), filename_(filename){ |
95 |
+ |
|
96 |
+ |
Globals* simParams = info->getSimParams(); |
97 |
+ |
eorFilename_ = filename_.substr(0, filename_.rfind(".")) + ".eor"; |
98 |
+ |
|
99 |
+ |
needCompression_ = simParams->getCompressDumpFile(); |
100 |
+ |
if (needCompression_) { |
101 |
+ |
filename_ += ".gz"; |
102 |
+ |
eorFilename_ += ".gz"; |
103 |
+ |
} |
104 |
+ |
|
105 |
|
#ifdef IS_MPI |
106 |
|
|
107 |
|
if (worldRank == 0) { |
108 |
|
#endif // is_mpi |
109 |
|
|
87 |
– |
eorFilename_ = filename_.substr(0, filename_.rfind(".")) + ".eor"; |
88 |
– |
dumpFile_.open(filename_.c_str(), std::ios::out | std::ios::trunc); |
110 |
|
|
111 |
+ |
dumpFile_ = createOStream(filename_); |
112 |
+ |
|
113 |
|
if (!dumpFile_) { |
114 |
|
sprintf(painCave.errMsg, "Could not open \"%s\" for dump output.\n", |
115 |
|
filename_.c_str()); |
135 |
|
if (worldRank == 0) { |
136 |
|
#endif // is_mpi |
137 |
|
|
138 |
< |
dumpFile_.close(); |
138 |
> |
delete dumpFile_; |
139 |
|
|
140 |
|
#ifdef IS_MPI |
141 |
|
|
595 |
|
} |
596 |
|
|
597 |
|
void DumpWriter::writeDump() { |
598 |
< |
writeFrame(dumpFile_); |
576 |
< |
|
598 |
> |
writeFrame(*dumpFile_); |
599 |
|
} |
600 |
|
|
601 |
|
void DumpWriter::writeEor() { |
602 |
< |
std::ofstream eorStream; |
602 |
> |
std::ostream* eorStream; |
603 |
|
|
604 |
|
#ifdef IS_MPI |
605 |
|
if (worldRank == 0) { |
606 |
|
#endif // is_mpi |
607 |
|
|
608 |
< |
eorStream.open(eorFilename_.c_str()); |
587 |
< |
if (!eorStream.is_open()) { |
588 |
< |
sprintf(painCave.errMsg, "DumpWriter : Could not open \"%s\" for writing.\n", |
589 |
< |
eorFilename_.c_str()); |
590 |
< |
painCave.isFatal = 1; |
591 |
< |
simError(); |
592 |
< |
} |
608 |
> |
eorStream = createOStream(eorFilename_); |
609 |
|
|
610 |
|
#ifdef IS_MPI |
611 |
|
} |
612 |
|
#endif // is_mpi |
613 |
|
|
614 |
< |
writeFrame(eorStream); |
614 |
> |
writeFrame(*eorStream); |
615 |
> |
|
616 |
> |
#ifdef IS_MPI |
617 |
> |
if (worldRank == 0) { |
618 |
> |
#endif // is_mpi |
619 |
> |
delete eorStream; |
620 |
> |
|
621 |
> |
#ifdef IS_MPI |
622 |
> |
} |
623 |
> |
#endif // is_mpi |
624 |
> |
|
625 |
|
} |
626 |
|
|
627 |
|
|
628 |
|
void DumpWriter::writeDumpAndEor() { |
603 |
– |
std::ofstream eorStream; |
629 |
|
std::vector<std::streambuf*> buffers; |
630 |
+ |
std::ostream* eorStream; |
631 |
|
#ifdef IS_MPI |
632 |
|
if (worldRank == 0) { |
633 |
|
#endif // is_mpi |
634 |
|
|
635 |
< |
buffers.push_back(dumpFile_.rdbuf()); |
635 |
> |
buffers.push_back(dumpFile_->rdbuf()); |
636 |
|
|
637 |
< |
eorStream.open(eorFilename_.c_str()); |
612 |
< |
if (!eorStream.is_open()) { |
613 |
< |
sprintf(painCave.errMsg, "DumpWriter : Could not open \"%s\" for writing.\n", |
614 |
< |
eorFilename_.c_str()); |
615 |
< |
painCave.isFatal = 1; |
616 |
< |
simError(); |
617 |
< |
} |
637 |
> |
eorStream = createOStream(eorFilename_); |
638 |
|
|
639 |
< |
buffers.push_back(eorStream.rdbuf()); |
639 |
> |
buffers.push_back(eorStream->rdbuf()); |
640 |
|
|
641 |
|
#ifdef IS_MPI |
642 |
|
} |
646 |
|
std::ostream os(&tbuf); |
647 |
|
|
648 |
|
writeFrame(os); |
649 |
+ |
|
650 |
+ |
#ifdef IS_MPI |
651 |
+ |
if (worldRank == 0) { |
652 |
+ |
#endif // is_mpi |
653 |
+ |
delete eorStream; |
654 |
+ |
|
655 |
+ |
#ifdef IS_MPI |
656 |
+ |
} |
657 |
+ |
#endif // is_mpi |
658 |
|
|
659 |
|
} |
660 |
|
|
661 |
+ |
std::ostream* DumpWriter::createOStream(const std::string& filename) { |
662 |
+ |
std::ostream* newOStream; |
663 |
+ |
if (needCompression_) { |
664 |
+ |
newOStream = new ogzstream(filename.c_str()); |
665 |
+ |
} else { |
666 |
+ |
newOStream = new std::ofstream(filename.c_str()); |
667 |
+ |
} |
668 |
+ |
return newOStream; |
669 |
+ |
} |
670 |
|
|
633 |
– |
|
671 |
|
}//end namespace oopse |