Added large quantities of code for convex hull and constant pressure langevin dynamics.
Inversion fixes and amber mostly working
Changes for implementing Amber force field: Added Inversions and worked on BaseAtomTypes so that they'd function with the fortran side.
Adding Trappe torsion types and fixing Opls types
Code work on thiols and TraPPE torsions.
Many fixes for Charmm-type torsions.
Adding single precision capabilities to c++ side
Wow thats alot o' files. Now passing forceFieldOptions to all of the parsers.
OptionSectionParser get compiled
xemacs has been drafted to perform our indentation services
(1) complete section parser's error message (2) add GhostTorsion (3) accumulate inertial tensor from the directional atoms before calculate rigidbody's inertial tensor
merging new_design branch into OOPSE-2.0
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