src/math/OOPSERandNumGen.hpp

 /*
 * Copyright (c) 2005 The University of Notre Dame. All Rights Reserved.
 *
 * The University of Notre Dame grants you ("Licensee") a
 * non-exclusive, royalty free, license to use, modify and
 * redistribute this software in source and binary code form, provided
 * that the following conditions are met:
 *
 * 1. Acknowledgement of the program authors must be made in any
 *    publication of scientific results based in part on use of the
 *    program.  An acceptable form of acknowledgement is citation of
 *    the article in which the program was described (Matthew
 *    A. Meineke, Charles F. Vardeman II, Teng Lin, Christopher
 *    J. Fennell and J. Daniel Gezelter, "OOPSE: An Object-Oriented
 *    Parallel Simulation Engine for Molecular Dynamics,"
 *    J. Comput. Chem. 26, pp. 252-271 (2005))
 *
 * 2. Redistributions of source code must retain the above copyright
 *    notice, this list of conditions and the following disclaimer.
 *
 * 3. Redistributions in binary form must reproduce the above copyright
 *    notice, this list of conditions and the following disclaimer in the
 *    documentation and/or other materials provided with the
 *    distribution.
 *
 * This software is provided "AS IS," without a warranty of any
 * kind. All express or implied conditions, representations and
 * warranties, including any implied warranty of merchantability,
 * fitness for a particular purpose or non-infringement, are hereby
 * excluded.  The University of Notre Dame and its licensors shall not
 * be liable for any damages suffered by licensee as a result of
 * using, modifying or distributing the software or its
 * derivatives. In no event will the University of Notre Dame or its
 * licensors be liable for any lost revenue, profit or data, or for
 * direct, indirect, special, consequential, incidental or punitive
 * damages, however caused and regardless of the theory of liability,
 * arising out of the use of or inability to use software, even if the
 * University of Notre Dame has been advised of the possibility of
 * such damages.
 */

#ifndef MATH_OOPSERANDNUMGEN_HPP
#define MATH_OOPSERANDNUMGEN_HPP

#include <vector>
#include "MersenneTwister.hpp"
#include "utils/simError.h"

namespace oopse {

class OOPSERandNumGen{
    public:
        typedef unsigned long uint32; 
        
        OOPSERandNumGen( const uint32& oneSeed);
        OOPSERandNumGen();

        ~OOPSERandNumGen() {
            delete mtRand_;
        }
        
        /** Returns a real number in [0,1] */
        double rand() {
            return mtRand_->rand();
        }

        /** Returns a real number in [0, n] */
        double rand( const double& n ) {
            return mtRand_->rand(n);
        }

        /** Returns a real number in [0, 1) */
        double randExc() {
            return mtRand_->randExc();
        }

        /** Returns a real number in [0, n) */        
        double randExc( const double& n ) {
            return mtRand_->randExc(n);
        }

        /** Returns a real number in (0, 1) */                
        double randDblExc() {
            return mtRand_->randDblExc();
        }

        /** Returns a real number in (0, n) */                        
        double randDblExc( const double& n ) {
            return mtRand_->randDblExc(n);
        }

        /** Returns aninteger in [0,2^32-1]  */            
        uint32 randInt() {
           return mtRand_->randInt();
        }

        /** Returns aninteger in [0, n]  for n < 2^32 */     
        uint32 randInt( const uint32& n ) {
           return mtRand_->randInt(n);
        }
        
        /** Returns a 53-bitreal number in [0,1) (capacity of IEEE double precision) */
        double rand53() {
            return mtRand_->rand53();
        }
        
        /** Access to nonuniform random number distributions */
        double randNorm( const double& mean, const double& variance) {
            return mtRand_->randNorm(mean, variance);
        }
        
        // Re-seeding functions with same behavior as initializers
        void seed( const uint32 oneSeed );
        
        void seed();

    private:

        MTRand* mtRand_;
};


inline OOPSERandNumGen::OOPSERandNumGen( const uint32& oneSeed) {
#ifndef IS_MPI
    mtRand_ = new MTRand(oneSeed);
#else
    int nProcessors;
    MPI_Comm_size(MPI_COMM_WORLD, &nProcessors);
    mtRand_ = new MTRand(oneSeed, nProcessors, worldRank);
#endif

}

inline OOPSERandNumGen::OOPSERandNumGen() {
#ifndef IS_MPI
    mtRand_ = new MTRand();
#else
    std::vector<uint32> bigSeed;
    const int masterNode = 0;
    int nProcessors;
    MPI_Comm_size(MPI_COMM_WORLD, &nProcessors);
    mtRand_ = new MTRand(nProcessors, worldRank);

    seed();        
#endif

}

        // Re-seeding functions with same behavior as initializers
inline void OOPSERandNumGen::seed( const uint32 oneSeed ) {
#ifndef IS_MPI
    mtRand_->seed(oneSeed);
#else
    const int masterNode = 0;
    int seed = oneSeed;
    MPI_Bcast(&seed, 1, MPI_UNSIGNED_LONG, masterNode, MPI_COMM_WORLD); 

    if (seed != oneSeed) {
        sprintf(painCave.errMsg,
                "Using different seed to initialize OOPSERandNumGen.\n");
        painCave.isFatal = 1;;
        simError();
    }
    
#endif
}
        
inline void OOPSERandNumGen::seed() {
#ifndef IS_MPI
    mtRand_->seed();
#else

    std::vector<uint32> bigSeed;
    int size;
    const int masterNode = 0;
    if (worldRank == masterNode) {
        bigSeed = mtRand_->generateSeeds();
        size = bigSeed.size();
        MPI_Bcast(&size, 1, MPI_INT, masterNode, MPI_COMM_WORLD);        
        MPI_Bcast(&bigSeed[0], size, MPI_UNSIGNED_LONG, masterNode, MPI_COMM_WORLD); 

    }else {
        MPI_Bcast(&size, 1, MPI_INT, masterNode, MPI_COMM_WORLD);        
        bigSeed.resize(size);
        MPI_Bcast(&bigSeed[0], size, MPI_UNSIGNED_LONG, masterNode, MPI_COMM_WORLD); 
    }
    
    if (bigSeed.size() == 1) {
        mtRand_->seed(bigSeed[0]);
    } else {
        mtRand_->seed(&bigSeed[0], bigSeed.size());
    }

#endif
}    

}
#endif 
Revision:	2068
Committed:	Tue Mar 1 19:11:47 2005 UTC (19 years, 4 months ago) by tim
File size:	5916 byte(s)
Log Message:	adding OOPSERandNumGen
#	User	Rev	Content
1	tim	2068	/*
2			* Copyright (c) 2005 The University of Notre Dame. All Rights Reserved.
3			*
4			* The University of Notre Dame grants you ("Licensee") a
5			* non-exclusive, royalty free, license to use, modify and
6			* redistribute this software in source and binary code form, provided
7			* that the following conditions are met:
8			*
9			* 1. Acknowledgement of the program authors must be made in any
10			* publication of scientific results based in part on use of the
11			* program. An acceptable form of acknowledgement is citation of
12			* the article in which the program was described (Matthew
13			* A. Meineke, Charles F. Vardeman II, Teng Lin, Christopher
14			* J. Fennell and J. Daniel Gezelter, "OOPSE: An Object-Oriented
15			* Parallel Simulation Engine for Molecular Dynamics,"
16			* J. Comput. Chem. 26, pp. 252-271 (2005))
17			*
18			* 2. Redistributions of source code must retain the above copyright
19			* notice, this list of conditions and the following disclaimer.
20			*
21			* 3. Redistributions in binary form must reproduce the above copyright
22			* notice, this list of conditions and the following disclaimer in the
23			* documentation and/or other materials provided with the
24			* distribution.
25			*
26			* This software is provided "AS IS," without a warranty of any
27			* kind. All express or implied conditions, representations and
28			* warranties, including any implied warranty of merchantability,
29			* fitness for a particular purpose or non-infringement, are hereby
30			* excluded. The University of Notre Dame and its licensors shall not
31			* be liable for any damages suffered by licensee as a result of
32			* using, modifying or distributing the software or its
33			* derivatives. In no event will the University of Notre Dame or its
34			* licensors be liable for any lost revenue, profit or data, or for
35			* direct, indirect, special, consequential, incidental or punitive
36			* damages, however caused and regardless of the theory of liability,
37			* arising out of the use of or inability to use software, even if the
38			* University of Notre Dame has been advised of the possibility of
39			* such damages.
40			*/
41
42			#ifndef MATH_OOPSERANDNUMGEN_HPP
43			#define MATH_OOPSERANDNUMGEN_HPP
44
45			#include <vector>
46			#include "MersenneTwister.hpp"
47			#include "utils/simError.h"
48
49			namespace oopse {
50
51			class OOPSERandNumGen{
52			public:
53			typedef unsigned long uint32;
54
55			OOPSERandNumGen( const uint32& oneSeed);
56			OOPSERandNumGen();
57
58			~OOPSERandNumGen() {
59			delete mtRand_;
60			}
61
62			/** Returns a real number in [0,1] */
63			double rand() {
64			return mtRand_->rand();
65			}
66
67			/** Returns a real number in [0, n] */
68			double rand( const double& n ) {
69			return mtRand_->rand(n);
70			}
71
72			/** Returns a real number in [0, 1) */
73			double randExc() {
74			return mtRand_->randExc();
75			}
76
77			/** Returns a real number in [0, n) */
78			double randExc( const double& n ) {
79			return mtRand_->randExc(n);
80			}
81
82			/** Returns a real number in (0, 1) */
83			double randDblExc() {
84			return mtRand_->randDblExc();
85			}
86
87			/** Returns a real number in (0, n) */
88			double randDblExc( const double& n ) {
89			return mtRand_->randDblExc(n);
90			}
91
92			/** Returns aninteger in [0,2^32-1] */
93			uint32 randInt() {
94			return mtRand_->randInt();
95			}
96
97			/** Returns aninteger in [0, n] for n < 2^32 */
98			uint32 randInt( const uint32& n ) {
99			return mtRand_->randInt(n);
100			}
101
102			/** Returns a 53-bitreal number in [0,1) (capacity of IEEE double precision) */
103			double rand53() {
104			return mtRand_->rand53();
105			}
106
107			/** Access to nonuniform random number distributions */
108			double randNorm( const double& mean, const double& variance) {
109			return mtRand_->randNorm(mean, variance);
110			}
111
112			// Re-seeding functions with same behavior as initializers
113			void seed( const uint32 oneSeed );
114
115			void seed();
116
117			private:
118
119			MTRand* mtRand_;
120			};
121
122
123			inline OOPSERandNumGen::OOPSERandNumGen( const uint32& oneSeed) {
124			#ifndef IS_MPI
125			mtRand_ = new MTRand(oneSeed);
126			#else
127			int nProcessors;
128			MPI_Comm_size(MPI_COMM_WORLD, &nProcessors);
129			mtRand_ = new MTRand(oneSeed, nProcessors, worldRank);
130			#endif
131
132			}
133
134			inline OOPSERandNumGen::OOPSERandNumGen() {
135			#ifndef IS_MPI
136			mtRand_ = new MTRand();
137			#else
138			std::vector<uint32> bigSeed;
139			const int masterNode = 0;
140			int nProcessors;
141			MPI_Comm_size(MPI_COMM_WORLD, &nProcessors);
142			mtRand_ = new MTRand(nProcessors, worldRank);
143
144			seed();
145			#endif
146
147			}
148
149			// Re-seeding functions with same behavior as initializers
150			inline void OOPSERandNumGen::seed( const uint32 oneSeed ) {
151			#ifndef IS_MPI
152			mtRand_->seed(oneSeed);
153			#else
154			const int masterNode = 0;
155			int seed = oneSeed;
156			MPI_Bcast(&seed, 1, MPI_UNSIGNED_LONG, masterNode, MPI_COMM_WORLD);
157
158			if (seed != oneSeed) {
159			sprintf(painCave.errMsg,
160			"Using different seed to initialize OOPSERandNumGen.\n");
161			painCave.isFatal = 1;;
162			simError();
163			}
164
165			#endif
166			}
167
168			inline void OOPSERandNumGen::seed() {
169			#ifndef IS_MPI
170			mtRand_->seed();
171			#else
172
173			std::vector<uint32> bigSeed;
174			int size;
175			const int masterNode = 0;
176			if (worldRank == masterNode) {
177			bigSeed = mtRand_->generateSeeds();
178			size = bigSeed.size();
179			MPI_Bcast(&size, 1, MPI_INT, masterNode, MPI_COMM_WORLD);
180			MPI_Bcast(&bigSeed[0], size, MPI_UNSIGNED_LONG, masterNode, MPI_COMM_WORLD);
181
182			}else {
183			MPI_Bcast(&size, 1, MPI_INT, masterNode, MPI_COMM_WORLD);
184			bigSeed.resize(size);
185			MPI_Bcast(&bigSeed[0], size, MPI_UNSIGNED_LONG, masterNode, MPI_COMM_WORLD);
186			}
187
188			if (bigSeed.size() == 1) {
189			mtRand_->seed(bigSeed[0]);
190			} else {
191			mtRand_->seed(&bigSeed[0], bigSeed.size());
192			}
193
194			#endif
195			}
196
197			}
198			#endif