Adding single precision capabilities to c++ side
LangevinDynamics in progress
Adding Hydrodynamics Module
adding transpose into SquareMatrix3; fix a bug in AtomStamp where orientation is not set correctly.
using epsilon instead of 0.0 to avoid divergence in rotation matrix to quaternion transformation
fix a bug in convert rotation matrix to quaternion
xemacs has been drafted to perform our indentation services
fix a bug in converting rotation matrix to quaternion
fix compilation problem for g++ 3.4
merging new_design branch into OOPSE-2.0
add getArray function to RectMatrix and Vector classes
Snapshot and SnapshotManager in progress
Math library pass the unit test
except diagonalize(), all of functions in math library pass the test
more tests on math library
fix some bugs in Quaternion class
math library in progress
math library in progress
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