Changes required for Inversions and Base Atom types. This will break OOPSE badly for a few days or so...
Removed older version of openbabel from our code. We now have a configure check to see if openbabel is installed and then we link to the stuff we need. Conversion to OOPSE's md format is handled by only one application (atom2md), so most of the work went on there. ElementsTable still needs some work to function in parallel.
(1) complete section parser's error message (2) add GhostTorsion (3) accumulate inertial tensor from the directional atoms before calculate rigidbody's inertial tensor
moved Package variable into subdirectory makefiles to speed up the building process
merging new_design branch into OOPSE-2.0
define DEV_ROOT as relative path
change Makefile to relative path
Import of OOPSE v. 2.0
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