Changes for implementing Amber force field: Added Inversions and worked on BaseAtomTypes so that they'd function with the fortran side.
updating configure process
Removed older version of openbabel from our code. We now have a configure check to see if openbabel is installed and then we link to the stuff we need. Conversion to OOPSE's md format is handled by only one application (atom2md), so most of the work went on there. ElementsTable still needs some work to function in parallel.
Since status.F90 is used by interpolation.F90, the former needs to be listed above the later in the Makefile.
bug fixes for interpolation module
End of the Link --> List Return of the Oject-Oriented replace yacc/lex parser with antlr parser
cleaned up vector_class memory leak fix by deallocating in reverse order of how we allocated. Also migrated MoLocator into utils directory
added some stuff to clean out module files during "make clean"
added residentMem
adding physmem
minor change in BitSet
adding boost::any
moved Package variable into subdirectory makefiles to speed up the building process
fixing for gnugetopt
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