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/* | 
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 * Copyright (c) 2005 The University of Notre Dame. All Rights Reserved. | 
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 * | 
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 * The University of Notre Dame grants you ("Licensee") a | 
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 * non-exclusive, royalty free, license to use, modify and | 
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 * redistribute this software in source and binary code form, provided | 
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 * that the following conditions are met: | 
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 * | 
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 * 1. Acknowledgement of the program authors must be made in any | 
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 *    publication of scientific results based in part on use of the | 
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 *    program.  An acceptable form of acknowledgement is citation of | 
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 *    the article in which the program was described (Matthew | 
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 *    A. Meineke, Charles F. Vardeman II, Teng Lin, Christopher | 
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 *    J. Fennell and J. Daniel Gezelter, "OOPSE: An Object-Oriented | 
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 *    Parallel Simulation Engine for Molecular Dynamics," | 
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 *    J. Comput. Chem. 26, pp. 252-271 (2005)) | 
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 * | 
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 * 2. Redistributions of source code must retain the above copyright | 
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 *    notice, this list of conditions and the following disclaimer. | 
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 * | 
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 * 3. Redistributions in binary form must reproduce the above copyright | 
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 *    notice, this list of conditions and the following disclaimer in the | 
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 *    documentation and/or other materials provided with the | 
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 *    distribution. | 
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 * | 
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 * This software is provided "AS IS," without a warranty of any | 
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 * kind. All express or implied conditions, representations and | 
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 * warranties, including any implied warranty of merchantability, | 
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 * fitness for a particular purpose or non-infringement, are hereby | 
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 * excluded.  The University of Notre Dame and its licensors shall not | 
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 * be liable for any damages suffered by licensee as a result of | 
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 * using, modifying or distributing the software or its | 
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 * derivatives. In no event will the University of Notre Dame or its | 
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 * licensors be liable for any lost revenue, profit or data, or for | 
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 * direct, indirect, special, consequential, incidental or punitive | 
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 * damages, however caused and regardless of the theory of liability, | 
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 * arising out of the use of or inability to use software, even if the | 
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 * University of Notre Dame has been advised of the possibility of | 
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 * such damages. | 
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 */ | 
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 | 
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#include <algorithm>  | 
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  | 
#include "utils/StringUtils.hpp" | 
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  | 
 | 
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< | 
using namespace std; | 
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< | 
using namespace oopse; | 
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< | 
 | 
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< | 
string UpperCase(const string& S) { | 
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< | 
  string uc = S; | 
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< | 
  unsigned int n = uc.size(); | 
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< | 
  for (unsigned int j = 0; j < n; j++) {    | 
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< | 
    char sj = uc[j]; | 
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< | 
    if (sj >= 'a' && sj <= 'z') uc[j] = (char)(sj - ('a' - 'A')); | 
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> | 
namespace oopse { | 
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> | 
  std::string UpperCase(const std::string& S) { | 
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> | 
    std::string uc = S; | 
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> | 
    unsigned int n = uc.size(); | 
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> | 
    for (unsigned int j = 0; j < n; j++) {    | 
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> | 
      char sj = uc[j]; | 
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> | 
      if (sj >= 'a' && sj <= 'z') uc[j] = (char)(sj - ('a' - 'A')); | 
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> | 
    } | 
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> | 
    return uc; | 
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  | 
  } | 
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  return uc; | 
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} | 
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  | 
 | 
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< | 
string LowerCase(const string& S) { | 
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< | 
  string lc = S; | 
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< | 
  unsigned int n = lc.size(); | 
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< | 
  for (unsigned int j = 0; j < n; j++) { | 
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< | 
    char sj = lc[j]; | 
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< | 
    if (sj >= 'A' && sj <= 'Z') lc[j] = (char)(sj + ('a' - 'A')); | 
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> | 
  std::string LowerCase(const std::string& S) { | 
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> | 
    std::string lc = S; | 
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> | 
    unsigned int n = lc.size(); | 
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> | 
    for (unsigned int j = 0; j < n; j++) { | 
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> | 
      char sj = lc[j]; | 
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> | 
      if (sj >= 'A' && sj <= 'Z') lc[j] = (char)(sj + ('a' - 'A')); | 
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> | 
    } | 
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> | 
    return lc; | 
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  | 
  } | 
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– | 
  return lc; | 
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} | 
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  | 
 | 
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< | 
int findBegin(istream theStream, char* startText ){ | 
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< | 
  const int MAXLEN = 1024; | 
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< | 
  char readLine[MAXLEN];    | 
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< | 
  int foundText = 0; | 
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< | 
  int lineNum; | 
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< | 
  char* the_token; | 
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< | 
  char* eof_test; | 
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> | 
  char* trimSpaces(char *str) { | 
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> | 
    size_t len; | 
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> | 
    char *right, *left; | 
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  | 
 | 
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< | 
  // rewind the stream | 
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< | 
  theStream.seekg (0, ios::beg); | 
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< | 
  lineNum = 0; | 
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> | 
    if (strlen(str) == 0) return(str); | 
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  | 
   | 
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< | 
  if (!theStream.eof()) { | 
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< | 
    theStream.getline(readLine, MAXLEN); | 
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< | 
    lineNum++; | 
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< | 
  } else { | 
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< | 
    printf( "Error fast forwarding stream: stream is empty.\n"); | 
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< | 
    return -1; | 
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> | 
    /* Trim whitespace from left side */ | 
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> | 
    for (left = str; isspace(*left); left++); | 
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> | 
 | 
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> | 
    /* Trim whitespace from right side */ | 
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> | 
    if ((len = strlen(left))) | 
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> | 
      { | 
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> | 
        right = left + (len - 1); | 
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> | 
       | 
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        while (isspace(*right)) | 
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> | 
          { | 
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            *right = '\0'; | 
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            right--; | 
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> | 
          } | 
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> | 
      } | 
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> | 
 | 
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> | 
    /* Only do the str copy if there were spaces to the left */ | 
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> | 
    if (left != str) | 
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      strcpy(str, left); | 
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> | 
   | 
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    return (str); | 
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  | 
  } | 
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 | 
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  int findBegin(std::istream &theStream, char* startText ){ | 
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    const int MAXLEN = 1024; | 
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    char readLine[MAXLEN];    | 
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    int foundText = 0; | 
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+ | 
    int lineNum; | 
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+ | 
    char* the_token; | 
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    char* eof_test; | 
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 | 
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    // rewind the stream | 
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    theStream.seekg (0, std::ios::beg); | 
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    lineNum = 0; | 
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  | 
   | 
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< | 
  while ( !foundText ) { | 
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< | 
     | 
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< | 
    if (theStream.eof()) { | 
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< | 
      printf("Error fast forwarding stream at line %d: " | 
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< | 
             "stream ended unexpectedly.\n", lineNum); | 
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> | 
    if (!theStream.eof()) { | 
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> | 
      theStream.getline(readLine, MAXLEN); | 
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> | 
      lineNum++; | 
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> | 
    } else { | 
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> | 
      printf( "Error fast forwarding stream: stream is empty.\n"); | 
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  | 
      return -1; | 
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  | 
    } | 
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< | 
 | 
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< | 
    the_token = strtok( readLine, " ,;\t" ); | 
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< | 
 | 
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< | 
    if (!strcasecmp("begin", the_token)) { | 
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< | 
      the_token = TrimSpaces(strtok( NULL, " ,;\t" )); | 
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< | 
      foundText = !strcasecmp( startText, the_token ); | 
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< | 
    } | 
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< | 
 | 
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< | 
    if (!foundText) { | 
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< | 
      if (!theStream.eof()) { | 
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< | 
        theStream.getline(readLine, MAXLEN); | 
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        lineNum++; | 
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      } else { | 
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< | 
        printf( "Error fast forwarding stream at line %d: " | 
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< | 
                "stream ended unexpectedly.\n", lineNum); | 
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> | 
   | 
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> | 
    while ( !foundText ) { | 
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> | 
     | 
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> | 
      if (theStream.eof()) { | 
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> | 
        printf("Error fast forwarding stream at line %d: " | 
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> | 
               "stream ended unexpectedly.\n", lineNum); | 
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        return -1; | 
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      } | 
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+ | 
     | 
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      the_token = strtok( readLine, " ,;\t" ); | 
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      if ( the_token != NULL) | 
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        if (!strcasecmp("begin", the_token)) { | 
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          the_token = strtok( NULL, " ,;\t" ); | 
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          if ( the_token != NULL){ | 
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            foundText = !strcasecmp( startText, the_token ); | 
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          } | 
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        } | 
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     | 
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+ | 
      if (!foundText) { | 
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+ | 
        if (!theStream.eof()) { | 
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          theStream.getline(readLine, MAXLEN); | 
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          lineNum++; | 
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        } else { | 
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          printf( "Error fast forwarding stream at line %d: " | 
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                  "stream ended unexpectedly.\n", lineNum); | 
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          return -1; | 
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        } | 
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      } | 
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  | 
    } | 
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+ | 
    return lineNum; | 
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  | 
  } | 
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– | 
  return lineNum; | 
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– | 
} | 
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 | 
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< | 
int countTokens(char *line, char *delimiters) { | 
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< | 
  /* PURPOSE: RETURN A COUNT OF THE NUMBER OF TOKENS ON THE LINE. */ | 
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> | 
  int countTokens(char *line, char *delimiters) { | 
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> | 
    /* PURPOSE: RETURN A COUNT OF THE NUMBER OF TOKENS ON THE LINE. */ | 
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  | 
   | 
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< | 
  char *working_line;   /* WORKING COPY OF LINE. */ | 
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< | 
  int ntokens;          /* NUMBER OF TOKENS FOUND IN LINE. */ | 
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< | 
  char *strtok_ptr;     /* POINTER FOR STRTOK. */ | 
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> | 
    char *working_line;   /* WORKING COPY OF LINE. */ | 
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> | 
    int ntokens;          /* NUMBER OF TOKENS FOUND IN LINE. */ | 
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> | 
    char *strtok_ptr;     /* POINTER FOR STRTOK. */ | 
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  | 
 | 
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< | 
  strtok_ptr= working_line= strdup(line); | 
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> | 
    strtok_ptr= working_line= strdup(line); | 
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  | 
 | 
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< | 
  ntokens=0; | 
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< | 
  while (strtok(strtok_ptr,delimiters)!=NULL) | 
| 156 | 
< | 
    { | 
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< | 
      ntokens++; | 
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< | 
      strtok_ptr=NULL; | 
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< | 
    } | 
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> | 
    ntokens=0; | 
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> | 
    while (strtok(strtok_ptr,delimiters)!=NULL) | 
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> | 
      { | 
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> | 
        ntokens++; | 
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> | 
        strtok_ptr=NULL; | 
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> | 
      } | 
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  | 
 | 
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< | 
  free(working_line); | 
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< | 
  return(ntokens); | 
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< | 
} | 
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> | 
    free(working_line); | 
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> | 
    return(ntokens); | 
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> | 
  } | 
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  | 
 | 
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< | 
char* TrimSpaces(char *str) { | 
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< | 
  size_t len; | 
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< | 
  char *right, *left; | 
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> | 
  int isEndLine(char *line) { | 
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> | 
    char *working_line; | 
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> | 
    char *foo; | 
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  | 
   | 
| 169 | 
< | 
  if (strlen(str) == 0) return(str); | 
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> | 
    working_line = strdup(line); | 
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  | 
   | 
| 171 | 
< | 
  /* Trim whitespace from left side */ | 
| 172 | 
< | 
  for (left = str; isspace(*left); left++); | 
| 173 | 
< | 
   | 
| 174 | 
< | 
  /* Trim whitespace from right side */ | 
| 175 | 
< | 
  if ((len = strlen(left))) | 
| 176 | 
< | 
    { | 
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< | 
      right = left + (len - 1); | 
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< | 
       | 
| 109 | 
< | 
      while (isspace(*right)) | 
| 110 | 
< | 
        { | 
| 111 | 
< | 
          *right = '\0'; | 
| 112 | 
< | 
          right--; | 
| 113 | 
< | 
        } | 
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> | 
    foo = strtok(working_line, " ,;\t"); | 
| 172 | 
> | 
 | 
| 173 | 
> | 
    if (foo != NULL) { | 
| 174 | 
> | 
 | 
| 175 | 
> | 
      if (!strcasecmp(foo, "end")) return 1; | 
| 176 | 
> | 
 | 
| 177 | 
  | 
    } | 
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+ | 
  | 
| 179 | 
+ | 
    return 0; | 
| 180 | 
+ | 
  } | 
| 181 | 
  | 
   | 
| 182 | 
< | 
  /* Only do the str copy if their was spaces to the left */ | 
| 183 | 
< | 
  if (left != str) | 
| 184 | 
< | 
    strcpy(str, left); | 
| 185 | 
< | 
   | 
| 186 | 
< | 
  return (str); | 
| 182 | 
> | 
  std::string OOPSE_itoa(int value, unsigned int base) {     | 
| 183 | 
> | 
    const char digitMap[] = "0123456789abcdef";  | 
| 184 | 
> | 
    std::string buf; | 
| 185 | 
> | 
 | 
| 186 | 
> | 
    if (base == 0 || base > 16) {       | 
| 187 | 
> | 
      return buf; | 
| 188 | 
> | 
    } | 
| 189 | 
> | 
 | 
| 190 | 
> | 
    if (value == 0) { | 
| 191 | 
> | 
      buf = "0"; | 
| 192 | 
> | 
      return buf; | 
| 193 | 
> | 
    } | 
| 194 | 
> | 
     | 
| 195 | 
> | 
    // Take care negative int: | 
| 196 | 
> | 
         | 
| 197 | 
> | 
    std::string sign;     | 
| 198 | 
> | 
    int _value = value;  | 
| 199 | 
> | 
    if (value < 0) { | 
| 200 | 
> | 
      _value = -value; | 
| 201 | 
> | 
      sign = "-"; | 
| 202 | 
> | 
    } | 
| 203 | 
> | 
 | 
| 204 | 
> | 
    // Translating number to string with base: | 
| 205 | 
> | 
    for (int i = 30; _value && i ; --i) { | 
| 206 | 
> | 
      buf = digitMap[ _value % base ] + buf; | 
| 207 | 
> | 
      _value /= base; | 
| 208 | 
> | 
    } | 
| 209 | 
> | 
    return sign.append(buf); | 
| 210 | 
> | 
  } | 
| 211 | 
> | 
 | 
| 212 | 
> | 
 | 
| 213 | 
> | 
  std::string getPrefix(const std::string& str) { | 
| 214 | 
> | 
    return str.substr(0, str.rfind('.')); | 
| 215 | 
> | 
  } | 
| 216 | 
> | 
 | 
| 217 | 
> | 
  std::string getSuffix(const std::string& str) { | 
| 218 | 
> | 
    return str.substr(0, str.find('.')); | 
| 219 | 
> | 
  } | 
| 220 | 
> | 
 | 
| 221 | 
> | 
bool isInteger(const std::string& str) { | 
| 222 | 
> | 
 | 
| 223 | 
> | 
    bool result = false; | 
| 224 | 
> | 
 | 
| 225 | 
> | 
    std::string::const_iterator i = str.begin();     | 
| 226 | 
> | 
    if (i != str.end() && (*i == '+' || *i == '-' || std::isdigit(*i) )) { | 
| 227 | 
> | 
        ++i;         | 
| 228 | 
> | 
        while (i != str.end() && std::isdigit(*i)) | 
| 229 | 
> | 
            ++i; | 
| 230 | 
> | 
        if (i == str.end()) | 
| 231 | 
> | 
            result = true; | 
| 232 | 
> | 
    } | 
| 233 | 
> | 
     | 
| 234 | 
> | 
    return result; | 
| 235 | 
  | 
} | 
| 236 | 
  | 
 | 
| 237 | 
< | 
int isEndLine(char *line) { | 
| 238 | 
< | 
  char *working_line; | 
| 239 | 
< | 
  char *foo; | 
| 126 | 
< | 
   | 
| 127 | 
< | 
  working_line = strdup(line); | 
| 128 | 
< | 
   | 
| 129 | 
< | 
  foo = strtok(working_line, " ,;\t"); | 
| 237 | 
> | 
bool CaseInsensitiveEquals(const char ch1, const char ch2) { | 
| 238 | 
> | 
  return std::toupper((unsigned char)ch1) == std::toupper((unsigned char)ch2); | 
| 239 | 
> | 
} | 
| 240 | 
  | 
 | 
| 241 | 
< | 
 if (!strcasecmp(foo, "end")) return 1; | 
| 242 | 
< | 
  | 
| 243 | 
< | 
 return 0; | 
| 241 | 
> | 
size_t CaseInsensitiveFind(const std::string& str1, const std::string& str2) { | 
| 242 | 
> | 
  std::string::const_iterator pos = std::search(str1.begin(), str1.end(), str2.begin(), str2.end(), CaseInsensitiveEquals); | 
| 243 | 
> | 
  if (pos == str1.end()) | 
| 244 | 
> | 
    return std::string::npos; | 
| 245 | 
> | 
  else | 
| 246 | 
> | 
    return pos - str1.begin(); | 
| 247 | 
  | 
} | 
| 248 | 
+ | 
 | 
| 249 | 
+ | 
} |