adding a gay-berne switch to Dump2XYZ
Adding visitor for GBlipid atom type
End of the Link --> List Return of the Oject-Oriented replace yacc/lex parser with antlr parser
rewrite Globals
adding AtomNameVisitor
adding AtomNameVisitor to convert atom name to its base name; wrappingvisitor now wrap back to the center of the mass; adding P2OrderParameter into StaticProps
Couple of changes for TAP water. Need to parametrize.
xemacs has been drafted to perform our indentation services
fixed the wrapping
LipidTranVisitor should do the wrapping
adding IndexFinder which is used to select the molecules; Seperate ElectrostaticAtomTypesSectionParser into ChargeAtomTypesSectionParser and MultipoleAtomTypesSectionParser;remove print dipole option from Dump2XYZ;
fixing a strange icc8 bug (we think).
fix compilation problem for g++ 3.4
Fix a bug in GofRAngle
adding LipidTransVisitor, GofXyz is working now
dynamicProps get built
IgnoreVisitor and XYZVisitor now use selection library
(1)Cast wrong atom to DirectionalAtom in GhostTorsion (2)get the wrong column of electroframe
moved Package variable into subdirectory makefiles to speed up the building process
LinearVisitor get fixed
merging new_design branch into OOPSE-2.0
Added the linear visitor
replace old GebericData with new GenericData
define DEV_ROOT as relative path
change Makefile to relative path
change the #include in source files
Import of OOPSE v. 2.0