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Comparing trunk/OOPSE/ChangeLog (file contents):
Revision 704 by tim, Thu Jul 31 19:59:34 2003 UTC vs.
Revision 705 by mmeineke, Wed Aug 20 19:41:04 2003 UTC

# Line 1 | Line 1
1 + 2003-08-18 15:59  chuckv
2 +
3 +        * utils/sysbuilder/: MoLocator.cpp, MoLocator.hpp, bilayerSys.cpp,
4 +        latticeBuilder.cpp, latticeBuilder.hpp, nanoBuilder.cpp,
5 +        sysBuild.cpp, sysBuild.hpp: Fixed sysBuild -bilayer works.
6 +        Nanobuilder still broke.
7 +
8 + 2003-08-15 14:24  tim
9 +
10 +        * libBASS/Globals.cpp, libBASS/Globals.hpp,
11 +        libmdtools/GenericData.hpp, libmdtools/Integrator.hpp,
12 +        libmdtools/SimInfo.cpp, libmdtools/SimSetup.cpp,
13 +        libmdtools/ZConsWriter.cpp, libmdtools/ZConsWriter.hpp,
14 +        libmdtools/ZConstraint.cpp: Tested MPI version of Z-Constraint
15 +        Method
16 +
17 + 2003-08-14 11:16  tim
18 +
19 +        * libmdtools/: Integrator.hpp, ZConstraint.cpp: Stable ZConstraint
20 +        with average force substraction strategy
21 +
22 + 2003-08-13 16:20  chuckv
23 +
24 +        * libmdtools/: do_Forces.F90, mpiSimulation_module.F90: Added some
25 +        profiling code -DPROFILE.
26 +
27 + 2003-08-13 14:21  tim
28 +
29 +        * libBASS/Globals.cpp, libBASS/Globals.hpp,
30 +        libmdtools/Integrator.cpp, libmdtools/Integrator.hpp,
31 +        libmdtools/SimSetup.cpp, libmdtools/ZConstraint.cpp: harmonic
32 +        potential & z-contraint method
33 +
34 + 2003-08-12 16:44  mmeineke
35 +
36 +        * libBASS/BASS_interface.cpp, libBASS/Globals.hpp,
37 +        libmdtools/Atom.cpp, libmdtools/DUFF.cpp,
38 +        libmdtools/DirectionalAtom.cpp, libmdtools/InitializeFromFile.cpp,
39 +        libmdtools/SimInfo.cpp, libmdtools/SimSetup.cpp: fixed a really
40 +        annoying bug in Directional Atom, where mu was getting written to
41 +        pseudorandom memory location.
42 +
43 + 2003-08-12 14:56  tim
44 +
45 +        * libBASS/BASS_interface.cpp, libBASS/Globals.cpp,
46 +        libBASS/Globals.hpp, libmdtools/Atom.hpp,
47 +        libmdtools/DirectionalAtom.cpp, libmdtools/InitializeFromFile.cpp,
48 +        libmdtools/SimSetup.cpp: debugging globals
49 +
50 + 2003-08-12 13:40  gezelter
51 +
52 +        * forceFields/: DUFF.frc, EAM_FF.frc, LJFF.frc: formatting fixes
53 +        and new atypes in LJFF
54 +
55 + 2003-08-12 13:15  gezelter
56 +
57 +        * forceFields/: DUFF.frc, LJFF.frc: fixed a few references to older
58 +        stuff...
59 +
60 + 2003-08-12 13:14  chuckv
61 +
62 +        * utils/sysbuilder/sysBuild.ggo: Added comment line for getgetopt.
63 +
64 + 2003-08-12 13:04  chuckv
65 +
66 +        * utils/: nanoBuilder.cpp, nanoBuilder.hpp, nanoSysBuild.cpp:
67 +        Missed del of files before.
68 +
69 + 2003-08-12 13:03  chuckv
70 +
71 +        * utils/sysbuilder/: MPIobj/placeHolder, obj/placeHolder: [no log
72 +        message]
73 +
74 + 2003-08-12 13:01  chuckv
75 +
76 +        * utils/sysbuilder/Makefile: commit makefile
77 +
78 + 2003-08-12 12:51  tim
79 +
80 +        * libBASS/Globals.cpp, libBASS/Globals.hpp,
81 +        libmdtools/GenericData.cpp, libmdtools/GenericData.hpp,
82 +        libmdtools/Integrator.hpp, libmdtools/SimSetup.cpp,
83 +        libmdtools/SimSetup.hpp, libmdtools/ZConstraint.cpp: added
84 +        harmonical potential to z-constraint method
85 +
86 + 2003-08-11 17:31  chuckv
87 +
88 +        * utils/Makefile: Changed makefile to only build quicklate.
89 +
90 + 2003-08-11 17:25  chuckv
91 +
92 +        * ac-tools/configure.in: added utils/sysbuilder to be built.
93 +
94 + 2003-08-11 17:12  chuckv
95 +
96 +        * utils/: MoLocator.cpp, MoLocator.hpp, bilayerSys.cpp,
97 +        bilayerSys.hpp, latticeBuilder.cpp, latticeBuilder.hpp,
98 +        sysBuild.cpp, sysBuild.ggo, sysBuild.hpp, sysbuilder/MoLocator.cpp,
99 +        sysbuilder/MoLocator.hpp, sysbuilder/bilayerSys.cpp,
100 +        sysbuilder/bilayerSys.hpp, sysbuilder/cmdline.c,
101 +        sysbuilder/cmdline.h, sysbuilder/latticeBuilder.cpp,
102 +        sysbuilder/latticeBuilder.hpp, sysbuilder/nanoBuilder.cpp,
103 +        sysbuilder/nanoBuilder.hpp, sysbuilder/sysBuild.cpp,
104 +        sysbuilder/sysBuild.ggo, sysbuilder/sysBuild.hpp: Arranged
105 +        sysbuilder into a subdirectory. Fixed some of sysbuilder to work
106 +        with new atom allocation in libmdtools.
107 +
108 + 2003-08-11 14:41  tim
109 +
110 +        * libmdtools/: Integrator.cpp, Integrator.hpp: added method of
111 +        moving zconstraint molecules to specified positions
112 +
113 + 2003-08-11 14:39  tim
114 +
115 +        * libmdtools/: SimSetup.cpp, ZConstraint.cpp: [no log message]
116 +
117 + 2003-08-11 14:38  mmeineke
118 +
119 +        * libBASS/BASS_interface.cpp, libBASS/BASS_interface.h,
120 +        libBASS/BASS_parse.c, libBASS/BASSyacc.y, libBASS/Globals.cpp,
121 +        libBASS/Globals.hpp, libBASS/Makefile, libBASS/ZconStamp.cpp,
122 +        libBASS/ZconStamp.hpp, libBASS/interface.c, libBASS/make_nodes.c,
123 +        libBASS/make_nodes.h, libBASS/mpiBASS.c, libBASS/mpiBASS.h,
124 +        libBASS/node_list.h, libBASS/parse_interface.h,
125 +        libBASS/parse_tree.c, libmdtools/SimInfo.hpp: Added zConstraint
126 +        into the BASS language syntax.
127 +
128 + 2003-08-11 13:29  mmeineke
129 +
130 +        * libmdtools/: SimInfo.cpp, SimInfo.hpp: changed the number of
131 +        degrees of freedom to account for zConstreints
132 +
133 + 2003-08-08 16:22  chuckv
134 +
135 +        * libmdtools/EAM_FF.cpp, libmdtools/calc_eam.F90,
136 +        libmdtools/do_Forces.F90, libmdtools/neighborLists.F90,
137 +        samples/metals/Au.bass: EAM works...... Neighbor list also
138 +        works.....
139 +
140 + 2003-08-08 13:32  mmeineke
141 +
142 +        * props/: frameCount.c, frameCount.h, props.cpp, staticProps.cpp:
143 +        moved frameCount's functionality into DumpReader. also split props
144 +        into staticProps and dynamicProps. (currently only have
145 +        staticProps)
146 +
147 + 2003-08-08 12:48  mmeineke
148 +
149 +        * libmdtools/: Makefile, ZConstraint.cpp:  fixed a deprcated
150 +        instance of Atom::setZ and Atom::getZ in ZConstaint.
151 +
152 + 2003-08-07 16:47  mmeineke
153 +
154 +        * libmdtools/: Atom.cpp, Atom.hpp, Bend.cpp, Bond.cpp,
155 +        DirectionalAtom.cpp, DumpWriter.cpp, ForceFields.cpp,
156 +        GhostBend.cpp, InitializeFromFile.cpp, Makefile, SimInfo.cpp,
157 +        SimInfo.hpp, SimSetup.cpp, SimSetup.hpp, SimState.cpp,
158 +        SimState.hpp, Torsion.cpp: switched SimInfo to use a system
159 +        configuration from SimState rather than arrays from Atom
160 +
161 + 2003-08-06 19:47  chuckv
162 +
163 +        * libmdtools/Atom.hpp, libmdtools/EAM_FF.cpp,
164 +        libmdtools/SimInfo.cpp, libmdtools/calc_eam.F90,
165 +        libmdtools/do_Forces.F90, libmdtools/notifyCutoffs.F90,
166 +        samples/metals/Au.bass: Bug fixes for eam...
167 +
168 + 2003-08-01 11:18  tim
169 +
170 +        * libmdtools/: SimSetup.cpp, ZConstraint.cpp: stable version of
171 +        Z-Constraint
172 +
173 + 2003-07-31 14:59  tim
174 +
175 +        * ChangeLog, libmdtools/SimInfo.cpp, libmdtools/SimInfo.hpp,
176 +        libmdtools/SimSetup.cpp, libmdtools/SimSetup.hpp,
177 +        libmdtools/ZConstraint.cpp: add index range checking into
178 +        ZConstraint
179 +
180   2003-07-31 10:38  tim
181  
182          * libBASS/: Globals.cpp, Globals.hpp: added z-constraint parameters
# Line 13 | Line 192
192  
193   2003-07-30 16:17  chuckv
194  
195 <        * libmdtools/: EAM_FF.cpp, ForceFields.hpp, ReadWrite.hpp,
196 <        calc_eam.F90, do_Forces.F90, wrappers.F90: More bug fixes for eam.
195 >        * libmdtools/EAM_FF.cpp, libmdtools/ForceFields.hpp,
196 >        libmdtools/ReadWrite.hpp, libmdtools/calc_eam.F90,
197 >        libmdtools/do_Forces.F90, libmdtools/wrappers.F90,
198 >        samples/metals/Au.bass: More bug fixes for eam.
199  
200   2003-07-29 11:32  mmeineke
201  
202          * libmdtools/DumpReader.cpp, libmdtools/ReadWrite.hpp,
203 <        libmdtools/SimSetup.cpp, libmdtools/SimSetup.hpp, src/Makefile:
204 <        working on the props code
203 >        libmdtools/SimSetup.cpp, libmdtools/SimSetup.hpp,
204 >        props/frameCount.c, props/frameCount.h, props/props.cpp,
205 >        src/Makefile: working on the props code
206  
207   2003-07-29 11:32  mmeineke
208  
209          * libBASS/Globals.cpp: [no log message]
210  
211 + 2003-07-25 15:05  chuckv
212 +
213 +        * samples/metals/: Au.bass, metals.mdl: Added bass models for
214 +        metals
215 +
216   2003-07-25 15:00  chuckv
217  
218          * libmdtools/: Makefile, SimSetup.cpp, calc_eam.F90,

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