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Comparing trunk/OOPSE/ChangeLog (file contents):
Revision 894 by chuckv, Mon Jan 5 21:00:05 2004 UTC vs.
Revision 1091 by tim, Tue Mar 16 19:22:56 2004 UTC

# Line 1 | Line 1
1 + 2004-03-02 15:32  tim
2 +
3 +        * libmdtools/: DumpReader.cpp, DumpWriter.cpp, ReadWrite.hpp,
4 +        StatWriter.cpp, ZConsWriter.hpp: add LARGEFILE_SOURCE64 macro to
5 +        support large file
6 +
7 + 2004-03-01 16:17  tim
8 +
9 +        * utils/zsub.cpp: Fix a couple of bugs in zsub
10 +
11 + 2004-03-01 15:01  tim
12 +
13 +        * ChangeLog, libmdtools/DumpReader.cpp, libmdtools/Makefile.in,
14 +        libmdtools/OOPSEMinimizer.cpp, libmdtools/ReadWrite.hpp,
15 +        libmdtools/ZConsReader.cpp, libmdtools/ZConsReader.hpp,
16 +        utils/CmdlineZsub.c, utils/CmdlineZsub.h, utils/Makefile.in,
17 +        utils/quickLate.c, utils/zsub.cpp, utils/zsub.ggo: Adding zsub, a
18 +        program which can be used to replace atom type for zconstraint into
19 +        OOPSE
20 +
21 + 2004-02-24 11:36  tim
22 +
23 +        * ChangeLog, libBASS/Globals.cpp, libBASS/Globals.hpp,
24 +        libmdtools/PRCG.cpp, libmdtools/SimSetup.cpp, src/oose.cpp: [no log
25 +        message]
26 +
27 + 2004-02-24 10:49  tim
28 +
29 +        * libmdtools/: ConjugateMinimizer.cpp, ConjugateMinimizer.hpp,
30 +        Constraint.cpp, Constraint.hpp, ConstraintList.cpp,
31 +        ConstraintList.hpp, Minimizer.hpp, Minimizer1D.cpp,
32 +        Minimizer1D.hpp, MinimizerBase.hpp, NLModel.hpp, NLModel0.cpp,
33 +        NLModel1.cpp, NonlinearCons.cpp, NonlinearCons.hpp,
34 +        OOPSEMinimizerBase.cpp, SteepestDescent.cpp, SteepestDescent.hpp,
35 +        SymMatrix.hpp: remove the old implement of minimizer from cvs tree
36 +
37 + 2004-02-24 10:44  tim
38 +
39 +        * libmdtools/: CGFamilyMinimizer.cpp, ConjugateMinimizer.cpp,
40 +        Integrator.hpp, Makefile.in, Minimizer1D.cpp,
41 +        MinimizerParameterSet.hpp, OOPSEMinimizer.cpp, OOPSEMinimizer.hpp,
42 +        OOPSEMinimizerBase.cpp, PRCG.cpp, SDMinimizer.cpp, SimInfo.hpp,
43 +        SimSetup.cpp, Utility.cpp, Utility.hpp: Using inherit instead of
44 +        compose to implement Minimizer both versions are working
45 +
46 + 2004-02-17 14:23  tim
47 +
48 +        * ChangeLog, libmdtools/ConjugateMinimizer.cpp,
49 +        libmdtools/Integrator.cpp, libmdtools/Integrator.hpp,
50 +        libmdtools/Minimizer1D.cpp, libmdtools/Minimizer1D.hpp,
51 +        libmdtools/MinimizerParameterSet.hpp,
52 +        libmdtools/OOPSEMinimizerBase.cpp: adding function shakeF in order
53 +        to remove the constraint force along bond direction
54 +
55 + 2004-02-10 16:33  tim
56 +
57 +        * ChangeLog, libmdtools/ConjugateMinimizer.cpp,
58 +        libmdtools/DirectionalAtom.cpp, libmdtools/OOPSEMinimizerBase.cpp:
59 +        single version of energy minimization is working.
60 +
61 + 2004-02-09 15:38  mmeineke
62 +
63 +        * staticProps/: AllCorr.cpp, staticProps.cpp:  started a bug fix on
64 +        the massive memory overusage by OOPSE
65 +
66 + 2004-02-09 09:48  chrisfen
67 +
68 +        * libmdtools/: SimSetup.cpp, calc_LJ_FF.F90: Stripped out the
69 +        hardwired LJ_rcut
70 +
71 + 2004-02-06 19:14  tim
72 +
73 +        * libmdtools/: SymMatrix.hpp, Utility.cpp, Utility.hpp: [no log
74 +        message]
75 +
76 + 2004-02-06 16:37  tim
77 +
78 +        * ChangeLog, libBASS/Globals.cpp,
79 +        libmdtools/ConjugateMinimizer.cpp, libmdtools/Integrator.cpp,
80 +        libmdtools/Integrator.hpp, libmdtools/OOPSEMinimizerBase.cpp,
81 +        libmdtools/SimSetup.cpp, samples/water/ssd.bass: Single version of
82 +        energy minimization for argon is working, need to add constraint
83 +
84 + 2004-02-06 14:05  tim
85 +
86 +        * libmdtools/: AllIntegrator.hpp, Makefile.in, SimSetup.cpp: Add
87 +        one more file into Makefile.in
88 +
89 + 2004-02-06 13:58  tim
90 +
91 +        * ChangeLog, libBASS/Globals.cpp, libBASS/Globals.hpp,
92 +        libmdtools/AllIntegrator.hpp, libmdtools/ConjugateMinimizer.cpp,
93 +        libmdtools/ConjugateMinimizer.hpp, libmdtools/Functor.hpp,
94 +        libmdtools/Integrator.hpp, libmdtools/Makefile.in,
95 +        libmdtools/Minimizer.hpp, libmdtools/Minimizer1D.cpp,
96 +        libmdtools/Minimizer1D.hpp, libmdtools/MinimizerBase.hpp,
97 +        libmdtools/MinimizerParameterSet.hpp, libmdtools/NLModel.hpp,
98 +        libmdtools/NLModel1.cpp, libmdtools/OOPSEMinimizerBase.cpp,
99 +        libmdtools/SimInfo.cpp, libmdtools/SimInfo.hpp,
100 +        libmdtools/SimSetup.cpp, libmdtools/SimSetup.hpp, src/oose.cpp: Add
101 +        some lines into global.cpp to make it work with energy minimization
102 +
103 + 2004-02-04 17:26  tim
104 +
105 +        * libmdtools/: ConjugateMinimizer.cpp, ConjugateMinimizer.hpp,
106 +        Constraint.hpp, Functor.hpp, Minimizer.hpp, Minimizer1D.cpp,
107 +        Minimizer1D.hpp, MinimizerBase.hpp, MinimizerParameterSet.hpp,
108 +        NLModel.hpp, NLModel0.cpp, NLModel1.cpp: Fix a bunch of bugs   :-)
109 +        Single version of conjugate gradient with golden search linesearch
110 +        pass a couple of functions test. Brent's  algorithm is still broken
111 +
112 + 2004-02-03 17:54  tim
113 +
114 +        * libmdtools/: ConjugateMinimizer.cpp, ConjugateMinimizer.hpp,
115 +        Minimizer1D.cpp, Minimizer1D.hpp, MinimizerParameterSet.hpp,
116 +        NLModel.hpp, NLModel0.cpp, NLModel1.cpp, SteepestDescent.cpp,
117 +        SteepestDescent.hpp: NLModel0, NLModel1 pass uit test
118 +
119 + 2004-02-03 15:47  tim
120 +
121 +        * libmdtools/: ConjugateMinimizer.cpp, ConstraintList.cpp,
122 +        ConstraintList.hpp, LinearCons.cpp, LinearCons.hpp, Minimizer.hpp,
123 +        NonlinearCons.cpp, NonlinearCons.hpp, OOPSEMinimizerBase.cpp,
124 +        SimpleBoundCons.cpp, SimpleBoundCons.hpp, SteepestDescent.cpp,
125 +        SteepestDescent.hpp: [no log message]
126 +
127 + 2004-02-03 15:43  tim
128 +
129 +        * libmdtools/: ConjugateMinimizer.hpp, Constraint.cpp,
130 +        Constraint.hpp, Integrator.hpp, Minimizer1D.cpp, Minimizer1D.hpp,
131 +        MinimizerBase.hpp, MinimizerParameterSet.hpp, NLModel.hpp,
132 +        NLModel0.cpp, NLModel1.cpp: to avoid cyclic depency, refactory
133 +        constraint class
134 +
135 + 2004-02-03 12:10  tim
136 +
137 +        * libmdtools/Functor.hpp: Functor.hpp pass unit test
138 +
139 + 2004-02-03 10:21  tim
140 +
141 +        * ChangeLog, libmdtools/Minimizer1D.cpp,
142 +        libmdtools/Minimizer1D.hpp: begin unit test of minimizer
143 +
144 + 2004-02-02 15:29  tim
145 +
146 +        * libmdtools/: ConjugateMinimizer.hpp, Minimizer1D.cpp,
147 +        Minimizer1D.hpp, MinimizerBase.hpp, MinimizerParameterSet.hpp:
148 +        Adding GoldenSection and Brent LineSearch Method
149 +
150 + 2004-01-30 16:47  tim
151 +
152 +        * libmdtools/: ConjugateMinimizer.hpp, DumpWriter.cpp,
153 +        MinimizerBase.hpp, MinimizerParameterSet.hpp, NLModel.hpp,
154 +        NLModel0.cpp, NLModel1.cpp: using class  Minimizer1D derived from
155 +        MinimizerBase instead of a functor to do line seach
156 +
157 + 2004-01-30 10:00  chrisfen
158 +
159 +        * forceFields/Makefile.in, libmdtools/Atom.cpp,
160 +        libmdtools/Atom.hpp, libmdtools/ForceFields.hpp,
161 +        libmdtools/Integrator.cpp, libmdtools/Makefile.in,
162 +        libmdtools/SimInfo.cpp, libmdtools/SimSetup.cpp,
163 +        libmdtools/WATER.cpp, libmdtools/calc_LJ_FF.F90,
164 +        libmdtools/calc_reaction_field.F90, libmdtools/do_Forces.F90,
165 +        libmdtools/fortranWrapDefines.hpp: Substantial changes. OOPSE now
166 +        has a working WATER.cpp forcefield and parser.  This involved
167 +        changes to WATER.cpp and ForceFields amoung other files. One
168 +        important note: a hardwiring of LJ_rcut was made in calc_LJ_FF.F90.
169 +        This will be removed on the next commit...
170 +
171 + 2004-01-29 18:00  gezelter
172 +
173 +        * libBASS/BASS_interface.cpp, libBASS/BASS_interface.h,
174 +        libBASS/BASS_parse.c, libBASS/BASSlex.l, libBASS/BASSyacc.y,
175 +        libBASS/MakeStamps.cpp, libBASS/MakeStamps.hpp,
176 +        libBASS/Makefile.in, libBASS/RigidBodyStamp.cpp,
177 +        libBASS/RigidBodyStamp.hpp, libBASS/interface.c,
178 +        libBASS/make_nodes.c, libBASS/make_nodes.h, libBASS/mpiBASS.c,
179 +        libBASS/mpiBASS.h, libBASS/node_list.h, libBASS/parse_interface.h,
180 +        libBASS/parse_tree.c, libmdtools/Make.dep, samples/water/water.mdl:
181 +        member list fixes for rigid bodies
182 +
183 + 2004-01-29 16:44  tim
184 +
185 +        * libmdtools/MinimizerParameterSet.hpp: Adding
186 +        MinimizerParameterSet class.
187 +
188 + 2004-01-28 17:44  tim
189 +
190 +        * libmdtools/: NLModel.hpp, NLModel0.cpp, NLModel1.cpp: Revision of
191 +        NLModel0 and NLModel1
192 +
193 + 2004-01-28 15:40  tim
194 +
195 +        * libmdtools/: Constraint.hpp, NLModel.hpp, NLOPModel.hpp: revision
196 +        of NLModel
197 +
198 + 2004-01-27 15:34  gezelter
199 +
200 +        * samples/water/: ssd.bass, water.mdl: Added point-charge models to
201 +        water.mdl file, updated ssd.bass to use new SSD name
202 +
203 + 2004-01-27 15:34  gezelter
204 +
205 +        * libBASS/: BASS_interface.cpp, MakeStamps.cpp, MakeStamps.hpp,
206 +        MemberStamp.cpp, MemberStamp.hpp, node_list.h: Fix to new RigidBody
207 +        stuff
208 +
209 + 2004-01-27 14:39  gezelter
210 +
211 +        * samples/water/ssd.bass: Longer run time to test SSD water in MPI
212 +
213 + 2004-01-27 14:39  gezelter
214 +
215 +        * samples/metals/Au.bass: Longer run time to test gold in MPI
216 +
217 + 2004-01-27 14:38  gezelter
218 +
219 +        * samples/argon/argon.bass: Longer run time to test argon
220 +
221 + 2004-01-27 14:38  gezelter
222 +
223 +        * libmdtools/: Make.dep, WATER.cpp, mpiSimulation.cpp: More BASS
224 +        changes to do new rigidBody scheme a copy of WATER.cpp from this
225 +        morning
226 +
227 + 2004-01-27 14:37  gezelter
228 +
229 +        * libBASS/: BASS_interface.cpp, BASS_interface.h, BASS_parse.c,
230 +        BASSyacc.y, MakeStamps.cpp, MakeStamps.hpp, Makefile.in,
231 +        MemberStamp.cpp, MemberStamp.hpp, MoleculeStamp.cpp,
232 +        MoleculeStamp.hpp, RigidBodyStamp.cpp, RigidBodyStamp.hpp,
233 +        interface.c, make_nodes.c, make_nodes.h, mpiBASS.c, mpiBASS.h,
234 +        node_list.h, parse_interface.h, parse_tree.c: More BASS changes to
235 +        do new rigidBody scheme
236 +
237 + 2004-01-27 14:15  tim
238 +
239 +        * libmdtools/: AbstractClasses.hpp, ConjugateMinimizer.hpp,
240 +        Constraint.cpp, Constraint.hpp, Functor.hpp, Integrator.hpp,
241 +        MinimizerBase.hpp, NLOPConstraint.hpp, NLOPModel.hpp: revision of
242 +        constraint for Nonlinear Optimization Model
243 +
244 + 2004-01-26 17:01  gezelter
245 +
246 +        * utils/sysbuilder/MoLocator.cpp: Changes to BASS reader to use
247 +        Euler angles for orientation instead of unit vectors required
248 +        changes in MoLocator
249 +
250 + 2004-01-26 16:53  gezelter
251 +
252 +        * samples/: alkane/alkanes.mdl, beadLipid/beadLipid.mdl,
253 +        beadLipid/water.mdl, lipid/lipid.mdl, lipid/water.mdl,
254 +        water/water.mdl: Changed orientation lines from unit vectors to
255 +        euler angles
256 +
257 + 2004-01-26 16:52  gezelter
258 +
259 +        * libmdtools/SimSetup.cpp: Convert Eulers in degrees into radians
260 +
261 + 2004-01-26 16:45  gezelter
262 +
263 +        * libmdtools/SimSetup.cpp: Changed default orientation in BASS to
264 +        use Euler angles in the following order: phi, theta, psi Removed
265 +        the ability to set orientation using a unit vector
266 +
267 + 2004-01-26 16:26  gezelter
268 +
269 +        * libBASS/: AtomStamp.cpp, AtomStamp.hpp, RigidBodyStamp.cpp,
270 +        RigidBodyStamp.hpp: Changed default orientation in BASS to use
271 +        Euler angles in the following order: phi, theta, psi Removed the
272 +        ability to set orientation using a unit vector
273 +
274 + 2004-01-26 13:52  gezelter
275 +
276 +        * libBASS/: BASS_interface.cpp, MakeStamps.cpp, MakeStamps.hpp,
277 +        MoleculeStamp.cpp: Fix broken atom assignment for rigid bodies
278 +
279 + 2004-01-22 12:34  chrisfen
280 +
281 +        * libmdtools/: DUFF.cpp, EAM_FF.cpp, ForceFields.hpp, LJFF.cpp,
282 +        TraPPE_ExFF.cpp, WATER.cpp, mpiForceField.c, mpiForceField.h:
283 +        Corrected spelling in several directories, and stated WATER.cpp
284 +
285 + 2004-01-21 17:16  tim
286 +
287 +        * libmdtools/: MinimizerBase.hpp, NLOPConstraint.hpp,
288 +        NLOPModel.hpp: constraint class in energy minimization
289 +
290 + 2004-01-20 15:34  tim
291 +
292 +        * libmdtools/MinimizerBase.hpp: Adding energy minimization
293 +
294 + 2004-01-20 15:32  tim
295 +
296 +        * libmdtools/: ConjugateMinimizer.hpp, Integrator.hpp,
297 +        NLOPConstraint.hpp, NLOPModel.hpp: Energy Minimizer
298 +
299 + 2004-01-19 16:17  gezelter
300 +
301 +        * libmdtools/: SimInfo.cpp, SimSetup.cpp: Made some error messages
302 +        more user-friendly
303 +
304 + 2004-01-19 13:51  chrisfen
305 +
306 +        * forceFields/DUFF.frc: Updated the default water to SSD/E
307 +
308 + 2004-01-19 13:36  tim
309 +
310 +        * libmdtools/: Functor.hpp, SimSetup.cpp: Adding warning if sample
311 +        time, status time, thermal time and reset time are not divisible by
312 +        dt
313 +
314 + 2004-01-19 11:10  gezelter
315 +
316 +        * third-party/Makefile.in: Added a bunch of dummy targets so make
317 +        won't complain
318 +
319 + 2004-01-19 11:10  gezelter
320 +
321 +        * samples/lipid/5x5.bass: Fixed old bass file
322 +
323 + 2004-01-19 11:09  gezelter
324 +
325 +        * libmdtools/mpiSimulation.cpp: BASS changes to add RigidBodies
326 +        required a change in how the MoleculeStamps are used by divideLabor
327 +        in mpiSimulation.cpp
328 +
329 + 2004-01-19 11:08  gezelter
330 +
331 +        * libBASS/: BASS_interface.cpp, BASS_interface.h, BASS_parse.c,
332 +        BASSyacc.y, Globals.cpp, Globals.hpp, MakeStamps.cpp,
333 +        MakeStamps.hpp, Makefile.in, MoleculeStamp.cpp, MoleculeStamp.hpp,
334 +        RigidBodyStamp.cpp, RigidBodyStamp.hpp, interface.c, make_nodes.c,
335 +        make_nodes.h, mpiBASS.c, mpiBASS.h, node_list.h, parse_interface.h,
336 +        parse_tree.c: BASS changes to add RigidBodies and LJrcut
337 +
338 + 2004-01-16 16:55  tim
339 +
340 +        * libmdtools/: DumpWriter.cpp, EAM_FF.cpp: fix a bug in creating
341 +        eor file
342 +
343 + 2004-01-16 16:51  mmeineke
344 +
345 +        * libmdtools/DumpWriter.cpp: fixed a bug where only MPI jobs could
346 +        write eor files
347 +
348 + 2004-01-16 10:01  mmeineke
349 +
350 +        * libmdtools/DUFF.cpp: fixed an struct mismatch error in the mpi
351 +        initialization of the AtomStruct
352 +
353 + 2004-01-15 16:57  chuckv
354 +
355 +        * configure, libmdtools/DumpWriter.cpp: Fixes for Dumps
356 +
357 + 2004-01-15 10:51  gezelter
358 +
359 +        * ac-tools/aclocal.m4: Changes for altivec
360 +
361 + 2004-01-15 09:22  gezelter
362 +
363 +        * libmdtools/DumpWriter.cpp: Documented the Spud Toss
364 +
365 + 2004-01-14 23:33  gezelter
366 +
367 +        * libmdtools/do_Forces.F90: changes for charge charge interactions
368 +
369 + 2004-01-14 20:14  gezelter
370 +
371 +        * libmdtools/: calc_charge_charge.F90, calc_dipole_dipole.F90,
372 +        notifyCutoffs.F90: More work for adding charges
373 +
374 + 2004-01-14 17:41  gezelter
375 +
376 +        * configure, ac-tools/aclocal.m4, ac-tools/configure.in,
377 +        src/Makefile.in: autoconf fixes
378 +
379 + 2004-01-14 11:28  mmeineke
380 +
381 +        * utils/sysbuilder/latticeBilayer.cpp: fixed a periodic box bug
382 +
383 + 2004-01-14 10:48  gezelter
384 +
385 +        * configure, ac-tools/aclocal.m4, ac-tools/configure.in,
386 +        src/Makefile.in, third-party/Makefile.in: autoconf compatibility
387 +        changes for icc8
388 +
389 + 2004-01-13 18:01  gezelter
390 +
391 +        * libmdtools/: DUFF.cpp, EAM_FF.cpp, LJFF.cpp, SimInfo.cpp,
392 +        SimInfo.hpp, TraPPE_ExFF.cpp, atype_module.F90, do_Forces.F90,
393 +        fSimulation.h, fortranWrapDefines.hpp, simulation_module.F90:
394 +        Changes for adding direct charge-charge interactions (with
395 +        switching function)
396 +
397 + 2004-01-13 17:34  gezelter
398 +
399 +        * libmdtools/: Make.dep, Makefile.in, calc_charge_charge.F90,
400 +        oopseMPI_module.F90: Some changes for new MPI organization and
401 +        direct charge-charge interactions
402 +
403 + 2004-01-13 17:11  tim
404 +
405 +        * Functor.hpp, libmdtools/Functor.hpp: [no log message]
406 +
407 + 2004-01-13 16:22  tim
408 +
409 +        * Functor.hpp, samples/water/ssd.bass: Energy Minimization method
410 +
411 + 2004-01-13 15:35  tim
412 +
413 +        * libmdtools/: DumpWriter.cpp, ReadWrite.hpp: open and close the
414 +        eor file whenever it is used instead of rewinding it
415 +
416 + 2004-01-13 15:04  tim
417 +
418 +        * libmdtools/: DumpWriter.cpp, ReadWrite.hpp: change the interface
419 +        of writeFrame
420 +
421 + 2004-01-13 10:46  tim
422 +
423 +        * libmdtools/: DumpWriter.cpp, Integrator.cpp, ReadWrite.hpp:
424 +        Merge the code of writeFinal and writeDump;
425 +         Adding sortingIndex into DumpWriter;
426 +         Fix a bug of writing last frame twice in integrator
427 +
428 + 2004-01-12 17:54  tim
429 +
430 +        * ChangeLog, libmdtools/DumpWriter.cpp, samples/water/ssd.bass: fix
431 +        a bug in copying string
432 +
433 + 2004-01-12 15:37  tim
434 +
435 +        * ChangeLog, libmdtools/DumpWriter.cpp, samples/argon/argon.bass,
436 +        samples/water/ssd.bass: Dumpwriter only write out the atoms on
437 +        master nodes
438 +
439 + 2004-01-10 04:46  tim
440 +
441 +        * ChangeLog, libmdtools/DumpWriter.cpp: tagub is not a bug. Just
442 +        roll it back fix a bug of copying string to a pointer Still have
443 +        Seg fault, it looks like a random MPI seg fault in totalview
444 +
445 + 2004-01-09 21:15  tim
446 +
447 +        * libmdtools/DumpWriter.cpp: Fix a bug of declaration of tagub
448 +
449 + 2004-01-09 15:29  gezelter
450 +
451 +        * libmdtools/DumpWriter.cpp: New DumpWriter (Attempt #4)
452 +
453 + 2004-01-08 17:25  chuckv
454 +
455 +        * libmdtools/DumpWriter.cpp: A work in progress...
456 +
457 + 2004-01-08 13:59  gezelter
458 +
459 +        * libmdtools/DumpWriter.cpp: null terminate some strings just in
460 +        case
461 +
462 + 2004-01-08 13:13  mmeineke
463 +
464 +        * libmdtools/InitializeFromFile.cpp: refixed the NVT readin XS
465 +        state bug.
466 +
467 + 2004-01-08 13:05  gezelter
468 +
469 +        * libmdtools/DumpWriter.cpp: added strncpy to DumpWriter
470 +
471 + 2004-01-08 12:57  mmeineke
472 +
473 +        * libmdtools/InitializeFromFile.cpp: fixed the restart from NVT
474 +        exstended state bug
475 +
476 + 2004-01-08 12:40  gezelter
477 +
478 +        * libmdtools/DumpWriter.cpp: First Stab at fixing DumpWriter
479 +
480 + 2004-01-08 10:44  mmeineke
481 +
482 +        * libmdtools/InitializeFromFile.cpp: added support for the ignore
483 +        XS state info  flag
484 +
485 + 2004-01-07 14:26  tim
486 +
487 +        * libmdtools/DumpWriter.cpp, libmdtools/InitializeFromFile.cpp,
488 +        samples/argon/argon.bass, samples/water/ssd.bass: Fixed a bug of
489 +        sending message from master node to itself in DumpWriter.cpp and
490 +        InitializeFromFile.cpp
491 +
492 + 2004-01-06 14:49  chuckv
493 +
494 +        * libmdtools/: calc_dipole_dipole.F90, calc_reaction_field.F90:
495 +        performance fixes in the dipole dipole and reaction field code
496 +
497 + 2004-01-06 13:54  chuckv
498 +
499 +        * libmdtools/: calc_LJ_FF.F90, do_Forces.F90: Making do_Forces a
500 +        little more sane
501 +
502 + 2004-01-05 17:49  chuckv
503 +
504 +        * libmdtools/: calc_LJ_FF.F90, calc_dipole_dipole.F90,
505 +        calc_eam.F90, calc_gb.F90, calc_reaction_field.F90,
506 +        calc_sticky_pair.F90, do_Forces.F90: Attempting to increase
507 +        performance by reducing spurious function calls
508 +
509 + 2004-01-05 17:18  chuckv
510 +
511 +        * libmdtools/do_Forces.F90: mangling forces even further
512 +
513 + 2004-01-05 17:18  chuckv
514 +
515 +        * configure, ac-tools/configure.in: mpich mucking
516 +
517 + 2004-01-05 17:12  chuckv
518 +
519 +        * libmdtools/do_Forces.F90: mangled do_forces...
520 +
521 + 2004-01-05 16:00  chuckv
522 +
523 +        * ChangeLog, ac-tools/configure.in, libmdtools/atype_module.F90,
524 +        libmdtools/do_Forces.F90: Added bitmask to do_forces property
525 +        lookup
526 +
527   2003-12-29 14:56  chuckv
528  
529          * samples/metals/Au.bass, third-party/mt19937ar.c: Added
# Line 2178 | Line 2704
2704  
2705   2003-03-25 09:29  mmeineke
2706  
2707 <        * libBASS/obj/dummy, libmdtools/MPIobj/dummy, libmdtools/obj/dummy,
2707 >        * libBASS/obj/dummy, libmdtools/obj/dummy, libmdtools/MPIobj/dummy,
2708          src/MPIobj/dummy, src/obj/dummy: [no log message]
2709  
2710   2003-03-25 09:29  mmeineke
# Line 2332 | Line 2858
2858          libmdtools/mpiSimulation.hpp, libmdtools/mpiSimulation_module.F90,
2859          libmdtools/neighborLists.F90, libmdtools/randomSPRNG.cpp,
2860          libmdtools/randomSPRNG.hpp, libmdtools/simulation_module.F90,
2861 <        libmdtools/vector_class.F90, libmdtools/wrappers.F90: New OOPSE
2862 <        Tree
2861 >        libmdtools/vector_class.F90, libmdtools/wrappers.F90: Initial
2862 >        revision
2863  
2864   2003-03-21 12:42  mmeineke
2865  
# Line 2390 | Line 2916
2916          libmdtools/mpiSimulation.hpp, libmdtools/mpiSimulation_module.F90,
2917          libmdtools/neighborLists.F90, libmdtools/randomSPRNG.cpp,
2918          libmdtools/randomSPRNG.hpp, libmdtools/simulation_module.F90,
2919 <        libmdtools/vector_class.F90, libmdtools/wrappers.F90: Initial
2920 <        revision
2919 >        libmdtools/vector_class.F90, libmdtools/wrappers.F90: New OOPSE
2920 >        Tree
2921  

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