replace c++ header stuff with more portable c header stuff Also, mod file fixes and portability changes
added useInitTime to the BASS syntax. * useInitTime = false: sets the origin time to 0.0 regardless of the time stamp in the .init file * default=> useInitTime = true;
changed the formating ogf the error statements in simError
fixed a lot of warnings and errors found with SUN's SUNWspro.s1s7
cleaned things with gcc -Wall and g++ -Wall
fixes for configure
Changes to autoconf / configure method of configuring OOPSE
added resetTime to the Global namespace.
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user can setup seed in bass file now, if he does not specify any value for seed, oopse will take the value of seconds of system time as seed
updated the Changelog. added some bug fixes for setting the random number generator seed value.
bug fixed in ghost bend class
Tested MPI version of Z-Constraint Method
harmonic potential & z-contraint method
fixed a really annoying bug in Directional Atom, where mu was getting written to pseudorandom memory location.
debugging globals
added harmonical potential to z-constraint method
Added zConstraint into the BASS language syntax.
added z-constraint parameters to the globals
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starting some work for xlate
Removed Qmass
cleaned up the dependecy scripts in the makefiles
fixed the bugs introduced by switching the periodic box to a matrix
fixed up sysBuild to where it should now build our systems
Fixes for NPT / NVT
Fixes for NPT and NVT
Added targetPressure to BASS
a few fixes to simError.h
fixed some small things with simError.h
Bug fixes in read-write routines.
mpi fixes and debugging mpi read write from file.
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added dummy files to keep the build deirectories from being pruned.
electrostatic changes for dipole / RF separation
Makefile fixes, directory re-org, autoconf fixes
Makefile fixes for depends
This commit was generated by cvs2svn to compensate for changes in r377, which included commits to RCS files with non-trunk default branches.