1 |
mmeineke |
790 |
#include <stdlib.h> |
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#include <stdio.h> |
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#include <string.h> |
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mmeineke |
377 |
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#include "MakeStamps.hpp" |
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#include "MoleculeStamp.hpp" |
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#include "simError.h" |
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#ifdef IS_MPI |
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#include "mpiBASS.h" |
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#endif // is_mpi |
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LinkedMolStamp::~LinkedMolStamp(){ |
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if( mol_stamp != NULL ) delete mol_stamp; |
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if( next != NULL ) delete next; |
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} |
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void LinkedMolStamp::add( LinkedMolStamp* newbie ){ |
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if( next != NULL ) next->add( newbie ); |
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else{ |
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next = newbie; |
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next->setPrev( this ); |
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} |
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} |
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MoleculeStamp* LinkedMolStamp::match( char* id ){ |
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if( mol_stamp != NULL ){ |
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if(!strcmp( mol_stamp->getID(), id )){ |
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// make sure we aren't hiding somebody else with the same name |
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if(next != NULL ){ |
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if( next->match( id ) != NULL){ |
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sprintf( painCave.errMsg, |
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"Molecule Stamp Error. Two separate of declarations of " |
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"%s present.\n", |
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id ); |
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painCave.isFatal = 1; |
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simError(); |
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#ifdef IS_MPI |
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if( painCave.isEventLoop ){ |
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if( worldRank == 0 ) mpiInterfaceExit(); |
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} |
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#endif //is_mpi |
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} |
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else return mol_stamp; |
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} |
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else return mol_stamp; |
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} |
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} |
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if( next != NULL ) return next->match( id ); |
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return NULL; |
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} |
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LinkedMolStamp* LinkedMolStamp::extract( char* id ){ |
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if( mol_stamp != NULL ){ |
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if(!strcmp( mol_stamp->getID(), id )){ |
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// make sure we aren't hiding somebody else with the same name |
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if(next != NULL ){ |
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if( next->match( id ) != NULL){ |
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sprintf( painCave.errMsg, |
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"Molecule Stamp Error. Two separate of declarations of " |
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"%s present.\n", |
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id ); |
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painCave.isFatal = 1; |
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simError(); |
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#ifdef IS_MPI |
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if( painCave.isEventLoop ){ |
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if( worldRank == 0 ) mpiInterfaceExit(); |
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} |
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#endif //is_mpi |
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} |
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} |
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prev->setNext( next ); |
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if( next != NULL ) next->setPrev( prev ); |
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return this; |
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} |
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} |
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if( next != NULL ) return next->extract( id ); |
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return NULL; |
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} |
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MakeStamps::MakeStamps(){ |
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int i; |
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gezelter |
747 |
|
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hash_size = 47; |
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hash_shift = 4; |
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mmeineke |
377 |
|
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my_mols = new LinkedMolStamp*[hash_size]; |
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for( i=0; i<hash_size; i++ ){ |
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my_mols[i] = new LinkedMolStamp(); |
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} |
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} |
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MakeStamps::~MakeStamps(){ |
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int i; |
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for( i=0; i<hash_size; i++ ){ |
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if( my_mols[i] != NULL ) delete my_mols[i]; |
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} |
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delete[] my_mols; |
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} |
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int MakeStamps::hash( char* text ){ |
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register unsigned short int i = 0; // loop counter |
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int key = 0; // the hash key |
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while( text[i] != '\0' ){ |
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key = ( ( key << hash_shift ) + text[i] ) % hash_size; |
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i++; |
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} |
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if( key < 0 ){ |
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// if the key is less than zero, we've had an overflow error |
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sprintf( painCave.errMsg, |
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"There has been an overflow error in the MakeStamps hash key."); |
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painCave.isFatal = 1; |
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simError(); |
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#ifdef IS_MPI |
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if( painCave.isEventLoop ){ |
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if( worldRank == 0 ) mpiInterfaceExit(); |
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} |
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#endif //is_mpi |
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} |
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return key; |
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} |
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LinkedMolStamp* MakeStamps::extractMolStamp( char* the_id ){ |
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int key; |
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key = hash( the_id ); |
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if( my_mols[key] != NULL ){ |
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return my_mols[key]->extract( the_id ); |
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} |
151 |
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152 |
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return NULL; |
153 |
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} |
154 |
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155 |
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void MakeStamps::addMolStamp( MoleculeStamp* the_stamp ){ |
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157 |
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int key; |
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LinkedMolStamp* linked_mol; |
159 |
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160 |
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key = hash( the_stamp->getID() ); |
161 |
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162 |
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linked_mol = new LinkedMolStamp; |
163 |
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linked_mol->setStamp( the_stamp ); |
164 |
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165 |
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my_mols[key]->add( linked_mol ); |
166 |
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167 |
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} |
168 |
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169 |
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170 |
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int MakeStamps::newMolecule( event* the_event ){ |
171 |
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current_mol = new MoleculeStamp; |
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return 1; |
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} |
175 |
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int MakeStamps::moleculeAssign( event* the_event ){ |
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178 |
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switch( the_event->evt.asmt.asmt_type ){ |
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180 |
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case STRING: |
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the_event->err_msg = current_mol->assignString( the_event->evt.asmt.lhs, |
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the_event->evt.asmt.rhs.sval ); |
183 |
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break; |
184 |
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185 |
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case DOUBLE: |
186 |
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the_event->err_msg = current_mol->assignDouble( the_event->evt.asmt.lhs, |
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the_event->evt.asmt.rhs.dval ); |
188 |
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break; |
189 |
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190 |
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case INT: |
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the_event->err_msg = current_mol->assignInt( the_event->evt.asmt.lhs, |
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the_event->evt.asmt.rhs.ival ); |
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break; |
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195 |
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default: |
196 |
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the_event->err_msg = strdup( "MakeStamp error. Invalid molecule" |
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" assignment type" ); |
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return 0; |
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break; |
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} |
201 |
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if( the_event->err_msg != NULL ) return 0; |
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return 1; |
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} |
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int MakeStamps::moleculeEnd( event* the_event ){ |
206 |
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the_event->err_msg = current_mol->checkMe(); |
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// if err_msg is set, then something is wrong |
209 |
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if( the_event->err_msg != NULL ) return 0; |
210 |
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211 |
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addMolStamp( current_mol ); |
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return 1; |
213 |
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} |
214 |
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215 |
gezelter |
957 |
int MakeStamps::newRigidBody( event* the_event ){ |
216 |
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217 |
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current_rigidbody = new RigidBodyStamp; |
218 |
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219 |
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the_event->err_msg = current_mol->addRigidBody( current_rigidbody, |
220 |
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the_event->evt.blk_index ); |
221 |
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if( the_event->err_msg != NULL ) return 0; |
222 |
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return 1; |
223 |
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} |
224 |
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225 |
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int MakeStamps::rigidBodyPosition( event* the_event ){ |
226 |
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227 |
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current_rigidbody->setPosition( the_event->evt.pos.x, |
228 |
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the_event->evt.pos.y, |
229 |
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the_event->evt.pos.z ); |
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return 1; |
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} |
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int MakeStamps::rigidBodyOrientation( event* the_event ){ |
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current_rigidbody->setOrientation( the_event->evt.ornt.x, |
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the_event->evt.ornt.y, |
238 |
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the_event->evt.ornt.z ); |
239 |
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return 1; |
240 |
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} |
241 |
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242 |
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int MakeStamps::rigidBodyAssign( event* the_event ){ |
243 |
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244 |
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switch( the_event->evt.asmt.asmt_type ){ |
245 |
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246 |
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case STRING: |
247 |
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the_event->err_msg = |
248 |
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current_rigidbody->assignString( the_event->evt.asmt.lhs, |
249 |
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the_event->evt.asmt.rhs.sval ); |
250 |
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if( the_event->err_msg != NULL ) return 0; |
251 |
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return 1; |
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break; |
253 |
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254 |
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case DOUBLE: |
255 |
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the_event->err_msg = |
256 |
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current_rigidbody->assignDouble( the_event->evt.asmt.lhs, |
257 |
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the_event->evt.asmt.rhs.dval ); |
258 |
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if( the_event->err_msg != NULL ) return 0; |
259 |
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return 1; |
260 |
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break; |
261 |
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262 |
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case INT: |
263 |
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the_event->err_msg = |
264 |
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current_rigidbody->assignInt( the_event->evt.asmt.lhs, |
265 |
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the_event->evt.asmt.rhs.ival ); |
266 |
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if( the_event->err_msg != NULL ) return 0; |
267 |
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return 1; |
268 |
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break; |
269 |
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270 |
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default: |
271 |
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the_event->err_msg = strdup( "MakeStamp error. Invalid rigidBody" |
272 |
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" assignment type" ); |
273 |
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return 0; |
274 |
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break; |
275 |
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} |
276 |
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return 0; |
277 |
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} |
278 |
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279 |
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int MakeStamps::rigidBodyEnd( event* the_event ){ |
280 |
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281 |
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the_event->err_msg = current_rigidbody->checkMe(); |
282 |
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if( the_event->err_msg != NULL ) return 0; |
283 |
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284 |
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return 1; |
285 |
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} |
286 |
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287 |
mmeineke |
377 |
int MakeStamps::newAtom( event* the_event ){ |
288 |
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289 |
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current_atom = new AtomStamp; |
290 |
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291 |
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the_event->err_msg = current_mol->addAtom( current_atom, |
292 |
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the_event->evt.blk_index ); |
293 |
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if( the_event->err_msg != NULL ) return 0; |
294 |
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return 1; |
295 |
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} |
296 |
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297 |
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int MakeStamps::atomPosition( event* the_event ){ |
298 |
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299 |
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current_atom->setPosition( the_event->evt.pos.x, |
300 |
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the_event->evt.pos.y, |
301 |
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the_event->evt.pos.z ); |
302 |
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return 1; |
303 |
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} |
304 |
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305 |
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306 |
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int MakeStamps::atomOrientation( event* the_event ){ |
307 |
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308 |
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current_atom->setOrientation( the_event->evt.ornt.x, |
309 |
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the_event->evt.ornt.y, |
310 |
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the_event->evt.ornt.z ); |
311 |
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return 1; |
312 |
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} |
313 |
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314 |
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int MakeStamps::atomAssign( event* the_event ){ |
315 |
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316 |
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switch( the_event->evt.asmt.asmt_type ){ |
317 |
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318 |
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case STRING: |
319 |
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the_event->err_msg = |
320 |
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current_atom->assignString( the_event->evt.asmt.lhs, |
321 |
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the_event->evt.asmt.rhs.sval ); |
322 |
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if( the_event->err_msg != NULL ) return 0; |
323 |
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return 1; |
324 |
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break; |
325 |
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326 |
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case DOUBLE: |
327 |
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the_event->err_msg = |
328 |
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current_atom->assignDouble( the_event->evt.asmt.lhs, |
329 |
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the_event->evt.asmt.rhs.dval ); |
330 |
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if( the_event->err_msg != NULL ) return 0; |
331 |
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return 1; |
332 |
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break; |
333 |
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334 |
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case INT: |
335 |
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the_event->err_msg = |
336 |
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current_atom->assignInt( the_event->evt.asmt.lhs, |
337 |
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the_event->evt.asmt.rhs.ival ); |
338 |
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if( the_event->err_msg != NULL ) return 0; |
339 |
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return 1; |
340 |
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break; |
341 |
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342 |
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default: |
343 |
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the_event->err_msg = strdup( "MakeStamp error. Invalid atom" |
344 |
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" assignment type" ); |
345 |
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return 0; |
346 |
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break; |
347 |
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} |
348 |
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return 0; |
349 |
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} |
350 |
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|
351 |
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int MakeStamps::atomEnd( event* the_event ){ |
352 |
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353 |
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the_event->err_msg = current_atom->checkMe(); |
354 |
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if( the_event->err_msg != NULL ) return 0; |
355 |
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356 |
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return 1; |
357 |
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} |
358 |
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|
359 |
|
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int MakeStamps::newBond( event* the_event ){ |
360 |
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|
361 |
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current_bond = new BondStamp; |
362 |
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|
363 |
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the_event->err_msg = current_mol->addBond( current_bond, |
364 |
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the_event->evt.blk_index ); |
365 |
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if( the_event->err_msg != NULL ) return 0; |
366 |
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|
367 |
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return 1; |
368 |
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} |
369 |
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|
370 |
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int MakeStamps::bondAssign( event* the_event ){ |
371 |
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|
372 |
|
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switch( the_event->evt.asmt.asmt_type ){ |
373 |
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|
374 |
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case STRING: |
375 |
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current_bond->assignString( the_event->evt.asmt.lhs, |
376 |
|
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the_event->evt.asmt.rhs.sval ); |
377 |
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return 1; |
378 |
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break; |
379 |
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|
380 |
|
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case DOUBLE: |
381 |
|
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current_bond->assignDouble( the_event->evt.asmt.lhs, |
382 |
|
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the_event->evt.asmt.rhs.dval ); |
383 |
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return 1; |
384 |
|
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break; |
385 |
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|
386 |
|
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case INT: |
387 |
|
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current_bond->assignInt( the_event->evt.asmt.lhs, |
388 |
|
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the_event->evt.asmt.rhs.ival ); |
389 |
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return 1; |
390 |
|
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break; |
391 |
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|
392 |
|
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default: |
393 |
|
|
the_event->err_msg = strdup( "MakeStamp error. Invalid bond" |
394 |
|
|
" assignment type" ); |
395 |
|
|
return 0; |
396 |
|
|
break; |
397 |
|
|
} |
398 |
|
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return 0; |
399 |
|
|
} |
400 |
|
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|
401 |
|
|
int MakeStamps::bondMember( event* the_event ){ |
402 |
|
|
|
403 |
|
|
current_bond->members( the_event->evt.mbr.a, |
404 |
|
|
the_event->evt.mbr.b ); |
405 |
|
|
return 1; |
406 |
|
|
} |
407 |
|
|
|
408 |
|
|
int MakeStamps::bondConstraint( event* the_event ){ |
409 |
|
|
|
410 |
|
|
current_bond->constrain( the_event->evt.cnstr ); |
411 |
|
|
return 1; |
412 |
|
|
} |
413 |
|
|
|
414 |
|
|
int MakeStamps::bondEnd( event* the_event ){ |
415 |
|
|
|
416 |
|
|
the_event->err_msg = current_bond->checkMe(); |
417 |
|
|
if( the_event->err_msg != NULL ) return 0; |
418 |
|
|
|
419 |
|
|
return 1; |
420 |
|
|
} |
421 |
|
|
|
422 |
|
|
int MakeStamps::newBend( event* the_event ){ |
423 |
|
|
|
424 |
|
|
current_bend = new BendStamp; |
425 |
|
|
|
426 |
|
|
the_event->err_msg = current_mol->addBend( current_bend, |
427 |
|
|
the_event->evt.blk_index ); |
428 |
|
|
if( the_event->err_msg != NULL ) return 0; |
429 |
|
|
|
430 |
|
|
return 1; |
431 |
|
|
} |
432 |
|
|
|
433 |
|
|
int MakeStamps::bendAssign( event* the_event ){ |
434 |
|
|
|
435 |
|
|
switch( the_event->evt.asmt.asmt_type ){ |
436 |
|
|
|
437 |
|
|
case STRING: |
438 |
|
|
current_bend->assignString( the_event->evt.asmt.lhs, |
439 |
|
|
the_event->evt.asmt.rhs.sval ); |
440 |
|
|
return 1; |
441 |
|
|
break; |
442 |
|
|
|
443 |
|
|
case DOUBLE: |
444 |
|
|
current_bend->assignDouble( the_event->evt.asmt.lhs, |
445 |
|
|
the_event->evt.asmt.rhs.dval ); |
446 |
|
|
return 1; |
447 |
|
|
break; |
448 |
|
|
|
449 |
|
|
case INT: |
450 |
|
|
current_bend->assignInt( the_event->evt.asmt.lhs, |
451 |
|
|
the_event->evt.asmt.rhs.ival ); |
452 |
|
|
return 1; |
453 |
|
|
break; |
454 |
|
|
|
455 |
|
|
default: |
456 |
|
|
the_event->err_msg = strdup( "MakeStamp error. Invalid bend" |
457 |
|
|
" assignment type" ); |
458 |
|
|
return 0; |
459 |
|
|
break; |
460 |
|
|
} |
461 |
|
|
return 0; |
462 |
|
|
} |
463 |
|
|
|
464 |
|
|
int MakeStamps::bendMember( event* the_event ){ |
465 |
|
|
|
466 |
|
|
current_bend->members( the_event->evt.mbr.a, |
467 |
|
|
the_event->evt.mbr.b, |
468 |
|
|
the_event->evt.mbr.c ); |
469 |
|
|
return 1; |
470 |
|
|
} |
471 |
|
|
|
472 |
|
|
int MakeStamps::bendConstraint( event* the_event ){ |
473 |
|
|
|
474 |
|
|
current_bend->constrain( the_event->evt.cnstr ); |
475 |
|
|
return 1; |
476 |
|
|
} |
477 |
|
|
|
478 |
|
|
int MakeStamps::bendEnd( event* the_event ){ |
479 |
|
|
|
480 |
|
|
the_event->err_msg = current_bend->checkMe(); |
481 |
|
|
if( the_event->err_msg != NULL ) return 0; |
482 |
|
|
|
483 |
|
|
return 1; |
484 |
|
|
} |
485 |
|
|
|
486 |
|
|
int MakeStamps::newTorsion( event* the_event ){ |
487 |
|
|
|
488 |
|
|
current_torsion = new TorsionStamp; |
489 |
|
|
|
490 |
|
|
the_event->err_msg = current_mol->addTorsion( current_torsion, |
491 |
|
|
the_event->evt.blk_index ); |
492 |
|
|
if( the_event->err_msg != NULL ) return 0; |
493 |
|
|
|
494 |
|
|
return 1; |
495 |
|
|
} |
496 |
|
|
|
497 |
|
|
int MakeStamps::torsionAssign( event* the_event ){ |
498 |
|
|
|
499 |
|
|
switch( the_event->evt.asmt.asmt_type ){ |
500 |
|
|
|
501 |
|
|
case STRING: |
502 |
|
|
current_torsion->assignString( the_event->evt.asmt.lhs, |
503 |
|
|
the_event->evt.asmt.rhs.sval ); |
504 |
|
|
return 1; |
505 |
|
|
break; |
506 |
|
|
|
507 |
|
|
case DOUBLE: |
508 |
|
|
current_torsion->assignDouble( the_event->evt.asmt.lhs, |
509 |
|
|
the_event->evt.asmt.rhs.dval ); |
510 |
|
|
return 1; |
511 |
|
|
break; |
512 |
|
|
|
513 |
|
|
case INT: |
514 |
|
|
current_torsion->assignInt( the_event->evt.asmt.lhs, |
515 |
|
|
the_event->evt.asmt.rhs.ival ); |
516 |
|
|
return 1; |
517 |
|
|
break; |
518 |
|
|
|
519 |
|
|
default: |
520 |
|
|
the_event->err_msg = strdup( "MakeStamp error. Invalid torsion" |
521 |
|
|
" assignment type" ); |
522 |
|
|
return 0; |
523 |
|
|
break; |
524 |
|
|
} |
525 |
|
|
return 0; |
526 |
|
|
} |
527 |
|
|
|
528 |
|
|
int MakeStamps::torsionMember( event* the_event ){ |
529 |
|
|
|
530 |
|
|
current_torsion->members( the_event->evt.mbr.a, |
531 |
|
|
the_event->evt.mbr.b, |
532 |
|
|
the_event->evt.mbr.c, |
533 |
|
|
the_event->evt.mbr.d ); |
534 |
|
|
return 1; |
535 |
|
|
} |
536 |
|
|
|
537 |
|
|
int MakeStamps::torsionConstraint( event* the_event ){ |
538 |
|
|
|
539 |
|
|
current_torsion->constrain( the_event->evt.cnstr ); |
540 |
|
|
return 1; |
541 |
|
|
} |
542 |
|
|
|
543 |
|
|
int MakeStamps::torsionEnd( event* the_event ){ |
544 |
|
|
|
545 |
|
|
the_event->err_msg = current_torsion->checkMe(); |
546 |
|
|
if( the_event->err_msg != NULL ) return 0; |
547 |
|
|
|
548 |
|
|
return 1; |
549 |
|
|
} |