4 |
|
|
5 |
|
#include "MakeStamps.hpp" |
6 |
|
#include "MoleculeStamp.hpp" |
7 |
+ |
#include "RigidBodyStamp.hpp" |
8 |
+ |
#include "CutoffGroupStamp.hpp" |
9 |
|
#include "simError.h" |
10 |
|
#ifdef IS_MPI |
11 |
|
#include "mpiBASS.h" |
217 |
|
int MakeStamps::newRigidBody( event* the_event ){ |
218 |
|
|
219 |
|
current_rigidbody = new RigidBodyStamp; |
220 |
+ |
|
221 |
+ |
printf("makeStamps rb index = %d\n", the_event->evt.blk_index); |
222 |
|
|
223 |
|
the_event->err_msg = current_mol->addRigidBody( current_rigidbody, |
224 |
|
the_event->evt.blk_index ); |
225 |
|
if( the_event->err_msg != NULL ) return 0; |
222 |
– |
return 1; |
223 |
– |
} |
224 |
– |
|
225 |
– |
int MakeStamps::rigidBodyPosition( event* the_event ){ |
226 |
– |
|
227 |
– |
current_rigidbody->setPosition( the_event->evt.pos.x, |
228 |
– |
the_event->evt.pos.y, |
229 |
– |
the_event->evt.pos.z ); |
230 |
– |
return 1; |
231 |
– |
} |
232 |
– |
|
233 |
– |
|
234 |
– |
int MakeStamps::rigidBodyOrientation( event* the_event ){ |
235 |
– |
|
236 |
– |
current_rigidbody->setOrientation( the_event->evt.ornt.x, |
237 |
– |
the_event->evt.ornt.y, |
238 |
– |
the_event->evt.ornt.z ); |
226 |
|
return 1; |
227 |
|
} |
228 |
|
|
261 |
|
break; |
262 |
|
} |
263 |
|
return 0; |
264 |
+ |
} |
265 |
+ |
|
266 |
+ |
int MakeStamps::rigidBodyMembers( event* the_event ){ |
267 |
+ |
|
268 |
+ |
int i; |
269 |
+ |
|
270 |
+ |
if( the_event->evt.mbrs.nMembers > 0 ){ |
271 |
+ |
|
272 |
+ |
for (i = 0; i < the_event->evt.mbrs.nMembers; i++) { |
273 |
+ |
current_rigidbody->addMember(the_event->evt.mbrs.memberList[i]); |
274 |
+ |
} |
275 |
+ |
|
276 |
+ |
return 1; |
277 |
+ |
|
278 |
+ |
} else { |
279 |
+ |
the_event->err_msg = strdup( "MakeStamp error. No members in memberList " |
280 |
+ |
" for this rigidBody."); |
281 |
+ |
return 0; |
282 |
+ |
|
283 |
+ |
} |
284 |
|
} |
285 |
|
|
286 |
|
int MakeStamps::rigidBodyEnd( event* the_event ){ |
287 |
|
|
288 |
|
the_event->err_msg = current_rigidbody->checkMe(); |
289 |
|
if( the_event->err_msg != NULL ) return 0; |
290 |
+ |
|
291 |
+ |
return 1; |
292 |
+ |
} |
293 |
+ |
|
294 |
+ |
int MakeStamps::newCutoffGroup( event* the_event ){ |
295 |
+ |
|
296 |
+ |
current_cutoffgroup = new CutoffGroupStamp; |
297 |
|
|
298 |
+ |
the_event->err_msg = current_mol->addCutoffGroup( current_cutoffgroup, |
299 |
+ |
the_event->evt.blk_index ); |
300 |
+ |
if( the_event->err_msg != NULL ) return 0; |
301 |
|
return 1; |
302 |
|
} |
303 |
|
|
304 |
+ |
int MakeStamps::cutoffGroupAssign( event* the_event ){ |
305 |
+ |
|
306 |
+ |
switch( the_event->evt.asmt.asmt_type ){ |
307 |
+ |
|
308 |
+ |
case STRING: |
309 |
+ |
the_event->err_msg = |
310 |
+ |
current_cutoffgroup->assignString( the_event->evt.asmt.lhs, |
311 |
+ |
the_event->evt.asmt.rhs.sval ); |
312 |
+ |
if( the_event->err_msg != NULL ) return 0; |
313 |
+ |
return 1; |
314 |
+ |
break; |
315 |
+ |
|
316 |
+ |
case DOUBLE: |
317 |
+ |
the_event->err_msg = |
318 |
+ |
current_cutoffgroup->assignDouble( the_event->evt.asmt.lhs, |
319 |
+ |
the_event->evt.asmt.rhs.dval ); |
320 |
+ |
if( the_event->err_msg != NULL ) return 0; |
321 |
+ |
return 1; |
322 |
+ |
break; |
323 |
+ |
|
324 |
+ |
case INT: |
325 |
+ |
the_event->err_msg = |
326 |
+ |
current_cutoffgroup->assignInt( the_event->evt.asmt.lhs, |
327 |
+ |
the_event->evt.asmt.rhs.ival ); |
328 |
+ |
if( the_event->err_msg != NULL ) return 0; |
329 |
+ |
return 1; |
330 |
+ |
break; |
331 |
+ |
|
332 |
+ |
default: |
333 |
+ |
the_event->err_msg = strdup( "MakeStamp error. Invalid CutoffGroup" |
334 |
+ |
" assignment type" ); |
335 |
+ |
return 0; |
336 |
+ |
break; |
337 |
+ |
} |
338 |
+ |
return 0; |
339 |
+ |
} |
340 |
+ |
|
341 |
+ |
int MakeStamps::cutoffGroupMembers( event* the_event ){ |
342 |
+ |
|
343 |
+ |
int i; |
344 |
+ |
|
345 |
+ |
if( the_event->evt.mbrs.nMembers > 0 ){ |
346 |
+ |
|
347 |
+ |
for (i = 0; i < the_event->evt.mbrs.nMembers; i++) { |
348 |
+ |
current_cutoffgroup->addMember(the_event->evt.mbrs.memberList[i]); |
349 |
+ |
} |
350 |
+ |
|
351 |
+ |
return 1; |
352 |
+ |
|
353 |
+ |
} else { |
354 |
+ |
the_event->err_msg = strdup( "MakeStamp error. No members in memberList " |
355 |
+ |
" for this CutoffGroup."); |
356 |
+ |
return 0; |
357 |
+ |
|
358 |
+ |
} |
359 |
+ |
} |
360 |
+ |
|
361 |
+ |
int MakeStamps::cutoffGroupEnd( event* the_event ){ |
362 |
+ |
|
363 |
+ |
the_event->err_msg = current_cutoffgroup->checkMe(); |
364 |
+ |
if( the_event->err_msg != NULL ) return 0; |
365 |
+ |
|
366 |
+ |
return 1; |
367 |
+ |
} |
368 |
+ |
|
369 |
|
int MakeStamps::newAtom( event* the_event ){ |
370 |
|
|
371 |
|
current_atom = new AtomStamp; |
372 |
|
|
373 |
|
the_event->err_msg = current_mol->addAtom( current_atom, |
374 |
|
the_event->evt.blk_index ); |
375 |
+ |
|
376 |
|
if( the_event->err_msg != NULL ) return 0; |
377 |
|
return 1; |
378 |
|
} |
388 |
|
|
389 |
|
int MakeStamps::atomOrientation( event* the_event ){ |
390 |
|
|
391 |
< |
current_atom->setOrientation( the_event->evt.ornt.x, |
392 |
< |
the_event->evt.ornt.y, |
393 |
< |
the_event->evt.ornt.z ); |
391 |
> |
current_atom->setOrientation( the_event->evt.ornt.phi, |
392 |
> |
the_event->evt.ornt.theta, |
393 |
> |
the_event->evt.ornt.psi ); |
394 |
|
return 1; |
395 |
|
} |
396 |
|
|
481 |
|
return 0; |
482 |
|
} |
483 |
|
|
484 |
< |
int MakeStamps::bondMember( event* the_event ){ |
484 |
> |
int MakeStamps::bondMembers( event* the_event ){ |
485 |
> |
|
486 |
> |
if( the_event->evt.mbrs.nMembers == 2 ){ |
487 |
> |
|
488 |
> |
current_bond->members( the_event->evt.mbrs.memberList[0], |
489 |
> |
the_event->evt.mbrs.memberList[1] ); |
490 |
> |
return 1; |
491 |
|
|
492 |
< |
current_bond->members( the_event->evt.mbr.a, |
493 |
< |
the_event->evt.mbr.b ); |
494 |
< |
return 1; |
492 |
> |
} else { |
493 |
> |
the_event->err_msg = strdup( "MakeStamp error. Wrong number of members " |
494 |
> |
" in bond"); |
495 |
> |
return 0; |
496 |
> |
|
497 |
> |
} |
498 |
> |
|
499 |
|
} |
500 |
|
|
501 |
|
int MakeStamps::bondConstraint( event* the_event ){ |
554 |
|
return 0; |
555 |
|
} |
556 |
|
|
557 |
< |
int MakeStamps::bendMember( event* the_event ){ |
557 |
> |
int MakeStamps::bendMembers( event* the_event ){ |
558 |
|
|
559 |
< |
current_bend->members( the_event->evt.mbr.a, |
560 |
< |
the_event->evt.mbr.b, |
561 |
< |
the_event->evt.mbr.c ); |
562 |
< |
return 1; |
559 |
> |
|
560 |
> |
switch( the_event->evt.mbrs.nMembers ) { |
561 |
> |
case 3: |
562 |
> |
current_bend->members( the_event->evt.mbrs.memberList[0], |
563 |
> |
the_event->evt.mbrs.memberList[1], |
564 |
> |
the_event->evt.mbrs.memberList[2]); |
565 |
> |
return 1; |
566 |
> |
break; |
567 |
> |
case 2: |
568 |
> |
current_bend->members( the_event->evt.mbrs.memberList[0], |
569 |
> |
the_event->evt.mbrs.memberList[1], |
570 |
> |
0 ); |
571 |
> |
return 1; |
572 |
> |
break; |
573 |
> |
default: |
574 |
> |
the_event->err_msg = strdup( "MakeStamp error. Wrong number of members " |
575 |
> |
"in bend."); |
576 |
> |
return 0; |
577 |
> |
break; |
578 |
> |
} |
579 |
> |
return 0; |
580 |
|
} |
581 |
|
|
582 |
|
int MakeStamps::bendConstraint( event* the_event ){ |
635 |
|
return 0; |
636 |
|
} |
637 |
|
|
638 |
< |
int MakeStamps::torsionMember( event* the_event ){ |
638 |
> |
int MakeStamps::torsionMembers( event* the_event ){ |
639 |
|
|
640 |
< |
current_torsion->members( the_event->evt.mbr.a, |
641 |
< |
the_event->evt.mbr.b, |
642 |
< |
the_event->evt.mbr.c, |
643 |
< |
the_event->evt.mbr.d ); |
644 |
< |
return 1; |
640 |
> |
if( the_event->evt.mbrs.nMembers == 4 ){ |
641 |
> |
|
642 |
> |
current_torsion->members( the_event->evt.mbrs.memberList[0], |
643 |
> |
the_event->evt.mbrs.memberList[1], |
644 |
> |
the_event->evt.mbrs.memberList[2], |
645 |
> |
the_event->evt.mbrs.memberList[3]); |
646 |
> |
return 1; |
647 |
> |
|
648 |
> |
} else { |
649 |
> |
the_event->err_msg = strdup( "MakeStamp error. Wrong number of members " |
650 |
> |
" in torsion"); |
651 |
> |
return 0; |
652 |
> |
|
653 |
> |
} |
654 |
|
} |
655 |
|
|
656 |
|
int MakeStamps::torsionConstraint( event* the_event ){ |