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#include <stdlib.h> |
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#include <stdio.h> |
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#include <string.h> |
4 |
|
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#include "MakeStamps.hpp" |
6 |
#include "MoleculeStamp.hpp" |
7 |
#include "simError.h" |
8 |
#ifdef IS_MPI |
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#include "mpiBASS.h" |
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#endif // is_mpi |
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|
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LinkedMolStamp::~LinkedMolStamp(){ |
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if( mol_stamp != NULL ) delete mol_stamp; |
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if( next != NULL ) delete next; |
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} |
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|
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void LinkedMolStamp::add( LinkedMolStamp* newbie ){ |
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|
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if( next != NULL ) next->add( newbie ); |
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else{ |
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next = newbie; |
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next->setPrev( this ); |
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} |
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} |
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|
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MoleculeStamp* LinkedMolStamp::match( char* id ){ |
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|
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if( mol_stamp != NULL ){ |
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if(!strcmp( mol_stamp->getID(), id )){ |
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|
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// make sure we aren't hiding somebody else with the same name |
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if(next != NULL ){ |
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if( next->match( id ) != NULL){ |
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sprintf( painCave.errMsg, |
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"Molecule Stamp Error. Two separate of declarations of " |
36 |
"%s present.\n", |
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id ); |
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painCave.isFatal = 1; |
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simError(); |
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#ifdef IS_MPI |
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if( painCave.isEventLoop ){ |
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if( worldRank == 0 ) mpiInterfaceExit(); |
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} |
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#endif //is_mpi |
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} |
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else return mol_stamp; |
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} |
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else return mol_stamp; |
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} |
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} |
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|
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if( next != NULL ) return next->match( id ); |
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|
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return NULL; |
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} |
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|
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LinkedMolStamp* LinkedMolStamp::extract( char* id ){ |
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|
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if( mol_stamp != NULL ){ |
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if(!strcmp( mol_stamp->getID(), id )){ |
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|
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// make sure we aren't hiding somebody else with the same name |
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if(next != NULL ){ |
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if( next->match( id ) != NULL){ |
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sprintf( painCave.errMsg, |
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"Molecule Stamp Error. Two separate of declarations of " |
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"%s present.\n", |
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id ); |
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painCave.isFatal = 1; |
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simError(); |
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#ifdef IS_MPI |
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if( painCave.isEventLoop ){ |
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if( worldRank == 0 ) mpiInterfaceExit(); |
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} |
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#endif //is_mpi |
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} |
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} |
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|
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prev->setNext( next ); |
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if( next != NULL ) next->setPrev( prev ); |
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return this; |
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} |
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} |
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|
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if( next != NULL ) return next->extract( id ); |
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|
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return NULL; |
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} |
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|
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MakeStamps::MakeStamps(){ |
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|
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int i; |
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|
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hash_size = 47; |
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hash_shift = 4; |
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|
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my_mols = new LinkedMolStamp*[hash_size]; |
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for( i=0; i<hash_size; i++ ){ |
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my_mols[i] = new LinkedMolStamp(); |
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} |
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|
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} |
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|
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MakeStamps::~MakeStamps(){ |
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|
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int i; |
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|
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for( i=0; i<hash_size; i++ ){ |
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if( my_mols[i] != NULL ) delete my_mols[i]; |
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} |
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delete[] my_mols; |
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} |
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|
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int MakeStamps::hash( char* text ){ |
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|
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register unsigned short int i = 0; // loop counter |
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int key = 0; // the hash key |
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|
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while( text[i] != '\0' ){ |
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|
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key = ( ( key << hash_shift ) + text[i] ) % hash_size; |
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|
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i++; |
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} |
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|
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if( key < 0 ){ |
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|
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// if the key is less than zero, we've had an overflow error |
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|
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sprintf( painCave.errMsg, |
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"There has been an overflow error in the MakeStamps hash key."); |
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painCave.isFatal = 1; |
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simError(); |
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#ifdef IS_MPI |
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if( painCave.isEventLoop ){ |
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if( worldRank == 0 ) mpiInterfaceExit(); |
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} |
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#endif //is_mpi |
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} |
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|
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return key; |
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} |
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|
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LinkedMolStamp* MakeStamps::extractMolStamp( char* the_id ){ |
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int key; |
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|
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key = hash( the_id ); |
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if( my_mols[key] != NULL ){ |
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return my_mols[key]->extract( the_id ); |
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} |
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|
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return NULL; |
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} |
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|
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void MakeStamps::addMolStamp( MoleculeStamp* the_stamp ){ |
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|
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int key; |
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LinkedMolStamp* linked_mol; |
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|
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key = hash( the_stamp->getID() ); |
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|
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linked_mol = new LinkedMolStamp; |
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linked_mol->setStamp( the_stamp ); |
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|
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my_mols[key]->add( linked_mol ); |
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|
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} |
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|
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|
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int MakeStamps::newMolecule( event* the_event ){ |
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|
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current_mol = new MoleculeStamp; |
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return 1; |
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} |
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|
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int MakeStamps::moleculeAssign( event* the_event ){ |
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|
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switch( the_event->evt.asmt.asmt_type ){ |
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|
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case STRING: |
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the_event->err_msg = current_mol->assignString( the_event->evt.asmt.lhs, |
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the_event->evt.asmt.rhs.sval ); |
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break; |
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|
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case DOUBLE: |
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the_event->err_msg = current_mol->assignDouble( the_event->evt.asmt.lhs, |
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the_event->evt.asmt.rhs.dval ); |
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break; |
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|
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case INT: |
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the_event->err_msg = current_mol->assignInt( the_event->evt.asmt.lhs, |
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the_event->evt.asmt.rhs.ival ); |
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break; |
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|
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default: |
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the_event->err_msg = strdup( "MakeStamp error. Invalid molecule" |
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" assignment type" ); |
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return 0; |
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break; |
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} |
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if( the_event->err_msg != NULL ) return 0; |
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return 1; |
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} |
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|
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int MakeStamps::moleculeEnd( event* the_event ){ |
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|
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the_event->err_msg = current_mol->checkMe(); |
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// if err_msg is set, then something is wrong |
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if( the_event->err_msg != NULL ) return 0; |
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|
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addMolStamp( current_mol ); |
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return 1; |
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} |
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|
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int MakeStamps::newAtom( event* the_event ){ |
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|
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current_atom = new AtomStamp; |
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|
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the_event->err_msg = current_mol->addAtom( current_atom, |
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the_event->evt.blk_index ); |
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if( the_event->err_msg != NULL ) return 0; |
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return 1; |
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} |
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|
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int MakeStamps::atomPosition( event* the_event ){ |
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|
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current_atom->setPosition( the_event->evt.pos.x, |
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the_event->evt.pos.y, |
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the_event->evt.pos.z ); |
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return 1; |
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} |
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|
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|
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int MakeStamps::atomOrientation( event* the_event ){ |
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|
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current_atom->setOrientation( the_event->evt.ornt.x, |
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the_event->evt.ornt.y, |
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the_event->evt.ornt.z ); |
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return 1; |
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} |
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|
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int MakeStamps::atomAssign( event* the_event ){ |
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|
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switch( the_event->evt.asmt.asmt_type ){ |
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|
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case STRING: |
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the_event->err_msg = |
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current_atom->assignString( the_event->evt.asmt.lhs, |
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the_event->evt.asmt.rhs.sval ); |
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if( the_event->err_msg != NULL ) return 0; |
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return 1; |
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break; |
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|
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case DOUBLE: |
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the_event->err_msg = |
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current_atom->assignDouble( the_event->evt.asmt.lhs, |
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the_event->evt.asmt.rhs.dval ); |
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if( the_event->err_msg != NULL ) return 0; |
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return 1; |
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break; |
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|
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case INT: |
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the_event->err_msg = |
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current_atom->assignInt( the_event->evt.asmt.lhs, |
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the_event->evt.asmt.rhs.ival ); |
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if( the_event->err_msg != NULL ) return 0; |
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return 1; |
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break; |
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|
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default: |
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the_event->err_msg = strdup( "MakeStamp error. Invalid atom" |
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" assignment type" ); |
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return 0; |
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break; |
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} |
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return 0; |
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} |
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|
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int MakeStamps::atomEnd( event* the_event ){ |
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|
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the_event->err_msg = current_atom->checkMe(); |
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if( the_event->err_msg != NULL ) return 0; |
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|
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return 1; |
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} |
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|
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int MakeStamps::newBond( event* the_event ){ |
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|
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current_bond = new BondStamp; |
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|
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the_event->err_msg = current_mol->addBond( current_bond, |
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the_event->evt.blk_index ); |
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if( the_event->err_msg != NULL ) return 0; |
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|
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return 1; |
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} |
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|
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int MakeStamps::bondAssign( event* the_event ){ |
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|
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switch( the_event->evt.asmt.asmt_type ){ |
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|
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case STRING: |
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current_bond->assignString( the_event->evt.asmt.lhs, |
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the_event->evt.asmt.rhs.sval ); |
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return 1; |
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break; |
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|
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case DOUBLE: |
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current_bond->assignDouble( the_event->evt.asmt.lhs, |
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the_event->evt.asmt.rhs.dval ); |
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return 1; |
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break; |
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|
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case INT: |
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current_bond->assignInt( the_event->evt.asmt.lhs, |
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the_event->evt.asmt.rhs.ival ); |
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return 1; |
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break; |
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|
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default: |
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the_event->err_msg = strdup( "MakeStamp error. Invalid bond" |
322 |
" assignment type" ); |
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return 0; |
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break; |
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} |
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return 0; |
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} |
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|
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int MakeStamps::bondMember( event* the_event ){ |
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|
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current_bond->members( the_event->evt.mbr.a, |
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the_event->evt.mbr.b ); |
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return 1; |
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} |
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|
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int MakeStamps::bondConstraint( event* the_event ){ |
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|
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current_bond->constrain( the_event->evt.cnstr ); |
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return 1; |
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} |
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|
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int MakeStamps::bondEnd( event* the_event ){ |
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|
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the_event->err_msg = current_bond->checkMe(); |
345 |
if( the_event->err_msg != NULL ) return 0; |
346 |
|
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return 1; |
348 |
} |
349 |
|
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int MakeStamps::newBend( event* the_event ){ |
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|
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current_bend = new BendStamp; |
353 |
|
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the_event->err_msg = current_mol->addBend( current_bend, |
355 |
the_event->evt.blk_index ); |
356 |
if( the_event->err_msg != NULL ) return 0; |
357 |
|
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return 1; |
359 |
} |
360 |
|
361 |
int MakeStamps::bendAssign( event* the_event ){ |
362 |
|
363 |
switch( the_event->evt.asmt.asmt_type ){ |
364 |
|
365 |
case STRING: |
366 |
current_bend->assignString( the_event->evt.asmt.lhs, |
367 |
the_event->evt.asmt.rhs.sval ); |
368 |
return 1; |
369 |
break; |
370 |
|
371 |
case DOUBLE: |
372 |
current_bend->assignDouble( the_event->evt.asmt.lhs, |
373 |
the_event->evt.asmt.rhs.dval ); |
374 |
return 1; |
375 |
break; |
376 |
|
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case INT: |
378 |
current_bend->assignInt( the_event->evt.asmt.lhs, |
379 |
the_event->evt.asmt.rhs.ival ); |
380 |
return 1; |
381 |
break; |
382 |
|
383 |
default: |
384 |
the_event->err_msg = strdup( "MakeStamp error. Invalid bend" |
385 |
" assignment type" ); |
386 |
return 0; |
387 |
break; |
388 |
} |
389 |
return 0; |
390 |
} |
391 |
|
392 |
int MakeStamps::bendMember( event* the_event ){ |
393 |
|
394 |
current_bend->members( the_event->evt.mbr.a, |
395 |
the_event->evt.mbr.b, |
396 |
the_event->evt.mbr.c ); |
397 |
return 1; |
398 |
} |
399 |
|
400 |
int MakeStamps::bendConstraint( event* the_event ){ |
401 |
|
402 |
current_bend->constrain( the_event->evt.cnstr ); |
403 |
return 1; |
404 |
} |
405 |
|
406 |
int MakeStamps::bendEnd( event* the_event ){ |
407 |
|
408 |
the_event->err_msg = current_bend->checkMe(); |
409 |
if( the_event->err_msg != NULL ) return 0; |
410 |
|
411 |
return 1; |
412 |
} |
413 |
|
414 |
int MakeStamps::newTorsion( event* the_event ){ |
415 |
|
416 |
current_torsion = new TorsionStamp; |
417 |
|
418 |
the_event->err_msg = current_mol->addTorsion( current_torsion, |
419 |
the_event->evt.blk_index ); |
420 |
if( the_event->err_msg != NULL ) return 0; |
421 |
|
422 |
return 1; |
423 |
} |
424 |
|
425 |
int MakeStamps::torsionAssign( event* the_event ){ |
426 |
|
427 |
switch( the_event->evt.asmt.asmt_type ){ |
428 |
|
429 |
case STRING: |
430 |
current_torsion->assignString( the_event->evt.asmt.lhs, |
431 |
the_event->evt.asmt.rhs.sval ); |
432 |
return 1; |
433 |
break; |
434 |
|
435 |
case DOUBLE: |
436 |
current_torsion->assignDouble( the_event->evt.asmt.lhs, |
437 |
the_event->evt.asmt.rhs.dval ); |
438 |
return 1; |
439 |
break; |
440 |
|
441 |
case INT: |
442 |
current_torsion->assignInt( the_event->evt.asmt.lhs, |
443 |
the_event->evt.asmt.rhs.ival ); |
444 |
return 1; |
445 |
break; |
446 |
|
447 |
default: |
448 |
the_event->err_msg = strdup( "MakeStamp error. Invalid torsion" |
449 |
" assignment type" ); |
450 |
return 0; |
451 |
break; |
452 |
} |
453 |
return 0; |
454 |
} |
455 |
|
456 |
int MakeStamps::torsionMember( event* the_event ){ |
457 |
|
458 |
current_torsion->members( the_event->evt.mbr.a, |
459 |
the_event->evt.mbr.b, |
460 |
the_event->evt.mbr.c, |
461 |
the_event->evt.mbr.d ); |
462 |
return 1; |
463 |
} |
464 |
|
465 |
int MakeStamps::torsionConstraint( event* the_event ){ |
466 |
|
467 |
current_torsion->constrain( the_event->evt.cnstr ); |
468 |
return 1; |
469 |
} |
470 |
|
471 |
int MakeStamps::torsionEnd( event* the_event ){ |
472 |
|
473 |
the_event->err_msg = current_torsion->checkMe(); |
474 |
if( the_event->err_msg != NULL ) return 0; |
475 |
|
476 |
return 1; |
477 |
} |