 ../
|
obj/
|
400
(21 years ago)
by mmeineke:
*** empty log message ***
|
|
MPIobj/
|
400
(21 years ago)
by mmeineke:
*** empty log message ***
|
wrappers.F90
|
657
(21 years ago)
by chuckv:
More bug fixes for eam.
|
|
vector_class.F90
|
378
(21 years ago)
by mmeineke:
This commit was generated by cvs2svn to compensate for changes in r377,
which included commits to RCS files with non-trunk default branches.
|
|
timing.F90
|
892
(20 years ago)
by chuckv:
Fixes to profile code.
|
|
status_module.F90
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648
(21 years ago)
by chuckv:
Finished most code for eam....
|
|
simulation_module.F90
|
941
(20 years ago)
by gezelter:
Changes for adding direct charge-charge interactions (with switching function)
|
|
randomSPRNG.hpp
|
450
(21 years ago)
by mmeineke:
just little things like deleteing unused variables and such.
|
|
randomSPRNG.cpp
|
829
(20 years ago)
by gezelter:
replace c++ header stuff with more portable c header stuff
Also, mod file fixes and portability changes
Some fortran changes will need to be reversed.
|
|
oopseMPI_module.F90
|
940
(20 years ago)
by gezelter:
Some changes for new MPI organization and direct charge-charge interactions
|
|
notifyCutoffs.F90
|
945
(20 years ago)
by gezelter:
More work for adding charges
|
|
neighborLists.F90
|
872
(20 years ago)
by chrisfen:
Fixed a bug in SimInfo ordering of radii
|
|
mpiSimulation_module.F90
|
883
(20 years ago)
by chuckv:
Added functions for simple profiling in fortran.
|
|
mpiSimulation.hpp
|
1108
(20 years ago)
by tim:
Change DumpWriter and InitFromFile
|
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mpiSimulation.cpp
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1108
(20 years ago)
by tim:
Change DumpWriter and InitFromFile
|
|
mpiForceField.h
|
976
(20 years ago)
by chrisfen:
Corrected spelling in several directories, and stated WATER.cpp
|
|
mpiForceField.c
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976
(20 years ago)
by chrisfen:
Corrected spelling in several directories, and stated WATER.cpp
|
|
mpiComponentPlan.h
|
836
(20 years ago)
by mmeineke:
did a complete overhaul of how c calls fortran. All function pointers and fortran calls are rigidly typecast now.
|
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mdProfile.hpp
|
884
(20 years ago)
by mmeineke:
added some profile functionality
|
|
mdProfile.cpp
|
892
(20 years ago)
by chuckv:
Fixes to profile code.
|
|
fortranWrappers.hpp
|
836
(20 years ago)
by mmeineke:
did a complete overhaul of how c calls fortran. All function pointers and fortran calls are rigidly typecast now.
|
|
fortranWrappers.cpp
|
836
(20 years ago)
by mmeineke:
did a complete overhaul of how c calls fortran. All function pointers and fortran calls are rigidly typecast now.
|
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fortranWrapDefines.hpp
|
999
(20 years ago)
by chrisfen:
Substantial changes. OOPSE now has a working WATER.cpp forcefield and parser.
This involved changes to WATER.cpp and ForceFields amoung other files. One important
note: a hardwiring of LJ_rcut was made in calc_LJ_FF.F90. This will be removed on
the next commit...
|
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force_globals.F90
|
648
(21 years ago)
by chuckv:
Finished most code for eam....
|
|
forceFactory.hpp
|
378
(21 years ago)
by mmeineke:
This commit was generated by cvs2svn to compensate for changes in r377,
which included commits to RCS files with non-trunk default branches.
|
|
fSimulation.h
|
941
(20 years ago)
by gezelter:
Changes for adding direct charge-charge interactions (with switching function)
|
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fInfo.c
|
747
(20 years ago)
by gezelter:
Changes to autoconf / configure method of configuring OOPSE
|
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fForceField.h
|
834
(20 years ago)
by gezelter:
Compatibility fixes
|
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do_Forces.F90
|
1113
(20 years ago)
by tim:
fix whole bunch of bugs :-)
|
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definitions_module.F90
|
747
(20 years ago)
by gezelter:
Changes to autoconf / configure method of configuring OOPSE
|
|
config.h.in
|
747
(20 years ago)
by gezelter:
Changes to autoconf / configure method of configuring OOPSE
|
|
calc_sticky_pair.F90
|
898
(20 years ago)
by chuckv:
Attempting to increase performance by reducing spurious function calls
|
|
calc_reaction_field.F90
|
999
(20 years ago)
by chrisfen:
Substantial changes. OOPSE now has a working WATER.cpp forcefield and parser.
This involved changes to WATER.cpp and ForceFields amoung other files. One important
note: a hardwiring of LJ_rcut was made in calc_LJ_FF.F90. This will be removed on
the next commit...
|
|
calc_gb.F90
|
898
(20 years ago)
by chuckv:
Attempting to increase performance by reducing spurious function calls
|
|
calc_eam.F90
|
898
(20 years ago)
by chuckv:
Attempting to increase performance by reducing spurious function calls
|
|
calc_dipole_dipole.F90
|
945
(20 years ago)
by gezelter:
More work for adding charges
|
|
calc_charge_charge.F90
|
1113
(20 years ago)
by tim:
fix whole bunch of bugs :-)
|
|
calc_LJ_FF.F90
|
1041
(20 years ago)
by chrisfen:
Stripped out the hardwired LJ_rcut
|
|
atype_module.F90
|
941
(20 years ago)
by gezelter:
Changes for adding direct charge-charge interactions (with switching function)
|
|
ZconsVisitor.hpp
|
1118
(20 years ago)
by tim:
new implement of quickLate using visitor and composite pattern
|
|
ZconsVisitor.cpp
|
1118
(20 years ago)
by tim:
new implement of quickLate using visitor and composite pattern
|
|
ZConstraint.cpp
|
1093
(20 years ago)
by tim:
incorporate SMD into ZConstraint,it does not sound a good choice, next commit will seperate SMD and ZConstraint
|
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ZConsWriter.hpp
|
1091
(20 years ago)
by tim:
ZConstraint now can support sequential moving. Refactorying is needed to support SMD in ZConstraint
|
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ZConsWriter.cpp
|
1091
(20 years ago)
by tim:
ZConstraint now can support sequential moving. Refactorying is needed to support SMD in ZConstraint
|
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ZConsReader.hpp
|
1118
(20 years ago)
by tim:
new implement of quickLate using visitor and composite pattern
|
|
ZConsReader.cpp
|
1118
(20 years ago)
by tim:
new implement of quickLate using visitor and composite pattern
|
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WATER.cpp
|
1113
(20 years ago)
by tim:
fix whole bunch of bugs :-)
|
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Utility.hpp
|
1064
(20 years ago)
by tim:
Using inherit instead of compose to implement Minimizer
both versions are working
|
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Utility.cpp
|
1064
(20 years ago)
by tim:
Using inherit instead of compose to implement Minimizer
both versions are working
|
|
TorsionExtensions.cpp
|
378
(21 years ago)
by mmeineke:
This commit was generated by cvs2svn to compensate for changes in r377,
which included commits to RCS files with non-trunk default branches.
|
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Torsion.cpp
|
670
(21 years ago)
by mmeineke:
switched SimInfo to use a system configuration from SimState rather than arrays from Atom
|
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Thermo.hpp
|
799
(20 years ago)
by mmeineke:
removed entahlpy from the statwriter and thermo.
|
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Thermo.cpp
|
1118
(20 years ago)
by tim:
new implement of quickLate using visitor and composite pattern
|
|
StuntDouble.hpp
|
1118
(20 years ago)
by tim:
new implement of quickLate using visitor and composite pattern
|
|
StuntDouble.cpp
|
1118
(20 years ago)
by tim:
new implement of quickLate using visitor and composite pattern
|
|
StreamTokenizer.hpp
|
593
(21 years ago)
by gezelter:
Starting to worry about all the strtok() calls in our code
|
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StreamTokenizer.cpp
|
593
(21 years ago)
by gezelter:
Starting to worry about all the strtok() calls in our code
|
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StatWriter.cpp
|
1078
(20 years ago)
by tim:
add LARGEFILE_SOURCE64 macro to support large file
|
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SkipList.hpp
|
1097
(20 years ago)
by gezelter:
Changes for RigidBody dynamics (Somewhat extensive)
|
|
SkipList.cpp
|
1097
(20 years ago)
by gezelter:
Changes for RigidBody dynamics (Somewhat extensive)
|
|
SimpleBoundCons.hpp
|
1011
(20 years ago)
by tim:
*** empty log message ***
|
|
SimpleBoundCons.cpp
|
1011
(20 years ago)
by tim:
*** empty log message ***
|
|
SimState.hpp
|
670
(21 years ago)
by mmeineke:
switched SimInfo to use a system configuration from SimState rather than arrays from Atom
|
|
SimState.cpp
|
829
(20 years ago)
by gezelter:
replace c++ header stuff with more portable c header stuff
Also, mod file fixes and portability changes
Some fortran changes will need to be reversed.
|
|
SimSetup.hpp
|
1108
(20 years ago)
by tim:
Change DumpWriter and InitFromFile
|
|
SimSetup.cpp
|
1116
(20 years ago)
by tim:
fix a bug in setting exclude list
|
|
SimInfo.hpp
|
1118
(20 years ago)
by tim:
new implement of quickLate using visitor and composite pattern
|
|
SimInfo.cpp
|
1118
(20 years ago)
by tim:
new implement of quickLate using visitor and composite pattern
|
|
SRI.hpp
|
1097
(20 years ago)
by gezelter:
Changes for RigidBody dynamics (Somewhat extensive)
|
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SDMinimizer.cpp
|
1064
(20 years ago)
by tim:
Using inherit instead of compose to implement Minimizer
both versions are working
|
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RigidBodyVisitor.hpp
|
1118
(20 years ago)
by tim:
new implement of quickLate using visitor and composite pattern
|
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RigidBodyVisitor.cpp
|
1118
(20 years ago)
by tim:
new implement of quickLate using visitor and composite pattern
|
|
RigidBody.hpp
|
1118
(20 years ago)
by tim:
new implement of quickLate using visitor and composite pattern
|
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RigidBody.cpp
|
1118
(20 years ago)
by tim:
new implement of quickLate using visitor and composite pattern
|
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ReadWrite.hpp
|
1118
(20 years ago)
by tim:
new implement of quickLate using visitor and composite pattern
|
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PRCG.cpp
|
1066
(20 years ago)
by tim:
*** empty log message ***
|
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OtherVisitor.hpp
|
1118
(20 years ago)
by tim:
new implement of quickLate using visitor and composite pattern
|
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OtherVisitor.cpp
|
1118
(20 years ago)
by tim:
new implement of quickLate using visitor and composite pattern
|
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OOPSEMinimizer.hpp
|
1064
(20 years ago)
by tim:
Using inherit instead of compose to implement Minimizer
both versions are working
|
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OOPSEMinimizer.cpp
|
1108
(20 years ago)
by tim:
Change DumpWriter and InitFromFile
|
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NVT.cpp
|
1097
(20 years ago)
by gezelter:
Changes for RigidBody dynamics (Somewhat extensive)
|
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NPTxyz.cpp
|
1097
(20 years ago)
by gezelter:
Changes for RigidBody dynamics (Somewhat extensive)
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NPTi.cpp
|
857
(20 years ago)
by mmeineke:
moved the velocity scale matrix calculation outside of the atom loop in the NPT family of integrators.
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NPTf.cpp
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1097
(20 years ago)
by gezelter:
Changes for RigidBody dynamics (Somewhat extensive)
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NPT.cpp
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1097
(20 years ago)
by gezelter:
Changes for RigidBody dynamics (Somewhat extensive)
|
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Molecule.hpp
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1108
(20 years ago)
by tim:
Change DumpWriter and InitFromFile
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Molecule.cpp
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1113
(20 years ago)
by tim:
fix whole bunch of bugs :-)
|
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MinimizerParameterSet.hpp
|
1064
(20 years ago)
by tim:
Using inherit instead of compose to implement Minimizer
both versions are working
|
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MatVec3.h
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1118
(20 years ago)
by tim:
new implement of quickLate using visitor and composite pattern
|
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MatVec3.c
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1097
(20 years ago)
by gezelter:
Changes for RigidBody dynamics (Somewhat extensive)
|
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Makefile.in
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1118
(20 years ago)
by tim:
new implement of quickLate using visitor and composite pattern
|
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Make.dep
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1108
(20 years ago)
by tim:
Change DumpWriter and InitFromFile
|
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LinearCons.hpp
|
1011
(20 years ago)
by tim:
*** empty log message ***
|
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LinearCons.cpp
|
1011
(20 years ago)
by tim:
*** empty log message ***
|
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LJFF.cpp
|
1097
(20 years ago)
by gezelter:
Changes for RigidBody dynamics (Somewhat extensive)
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Integrator.hpp
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1108
(20 years ago)
by tim:
Change DumpWriter and InitFromFile
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Integrator.cpp
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1118
(20 years ago)
by tim:
new implement of quickLate using visitor and composite pattern
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InitializeFromFile.cpp
|
1113
(20 years ago)
by tim:
fix whole bunch of bugs :-)
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GhostBend.cpp
|
707
(21 years ago)
by mmeineke:
updated the Changelog.
added some bug fixes for setting the random number generator seed value.
fixed a bug where ghostbend atom b was not being set. ( recent bug from SimState conversion)
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GenericData.hpp
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1118
(20 years ago)
by tim:
new implement of quickLate using visitor and composite pattern
|
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GenericData.cpp
|
1118
(20 years ago)
by tim:
new implement of quickLate using visitor and composite pattern
|
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Functor.hpp
|
1031
(20 years ago)
by tim:
Add some lines into global.cpp to make it work with energy minimization
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ForceFields.hpp
|
1097
(20 years ago)
by gezelter:
Changes for RigidBody dynamics (Somewhat extensive)
|
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ForceFields.cpp
|
1097
(20 years ago)
by gezelter:
Changes for RigidBody dynamics (Somewhat extensive)
|
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Exclude.hpp
|
1097
(20 years ago)
by gezelter:
Changes for RigidBody dynamics (Somewhat extensive)
|
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Exclude.cpp
|
1097
(20 years ago)
by gezelter:
Changes for RigidBody dynamics (Somewhat extensive)
|
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EAM_FF.cpp
|
1097
(20 years ago)
by gezelter:
Changes for RigidBody dynamics (Somewhat extensive)
|
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DumpWriter.cpp
|
1108
(20 years ago)
by tim:
Change DumpWriter and InitFromFile
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DumpReader.cpp
|
1118
(20 years ago)
by tim:
new implement of quickLate using visitor and composite pattern
|
|
DirectionalAtom.hpp
|
1097
(20 years ago)
by gezelter:
Changes for RigidBody dynamics (Somewhat extensive)
|
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DirectionalAtom.cpp
|
1097
(20 years ago)
by gezelter:
Changes for RigidBody dynamics (Somewhat extensive)
|
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DUFF.cpp
|
1097
(20 years ago)
by gezelter:
Changes for RigidBody dynamics (Somewhat extensive)
|
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CompositeVisitor.hpp
|
1118
(20 years ago)
by tim:
new implement of quickLate using visitor and composite pattern
|
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CompositeVisitor.cpp
|
1118
(20 years ago)
by tim:
new implement of quickLate using visitor and composite pattern
|
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CGFamilyMinimizer.cpp
|
1064
(20 years ago)
by tim:
Using inherit instead of compose to implement Minimizer
both versions are working
|
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BondExtensions.cpp
|
597
(21 years ago)
by mmeineke:
found a bug. Unit vectors were not being updated
|
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Bond.cpp
|
670
(21 years ago)
by mmeineke:
switched SimInfo to use a system configuration from SimState rather than arrays from Atom
|
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BendExtensions.cpp
|
829
(20 years ago)
by gezelter:
replace c++ header stuff with more portable c header stuff
Also, mod file fixes and portability changes
Some fortran changes will need to be reversed.
|
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Bend.cpp
|
670
(21 years ago)
by mmeineke:
switched SimInfo to use a system configuration from SimState rather than arrays from Atom
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BaseVisitor.hpp
|
1118
(20 years ago)
by tim:
new implement of quickLate using visitor and composite pattern
|
|
AtomVisitor.hpp
|
1118
(20 years ago)
by tim:
new implement of quickLate using visitor and composite pattern
|
|
AtomVisitor.cpp
|
1118
(20 years ago)
by tim:
new implement of quickLate using visitor and composite pattern
|
|
Atom.hpp
|
1118
(20 years ago)
by tim:
new implement of quickLate using visitor and composite pattern
|
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Atom.cpp
|
1118
(20 years ago)
by tim:
new implement of quickLate using visitor and composite pattern
|
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AllIntegrator.hpp
|
1032
(20 years ago)
by tim:
Add one more file into Makefile.in
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AbstractClasses.hpp
|
987
(20 years ago)
by tim:
revision of constraint for Nonlinear Optimization Model
|
