fixed the bugs introduced by switching the periodic box to a matrix
fixes for NPT and NVT
bug fixes
just little things like deleteing unused variables and such.
fixed some small things with simError.h
Fixed DumpWriter to be more robust to errors. also added a little namespace to InitFromFile to wrap it's helper functions in MPI
bug fix in DumpWriter.cpp
Bug fixes in read-write routines.
mpi fixes and debugging mpi read write from file.
fixes for local->global atom numbering in MPI
Fixes to fileio for MPI
bug fixes many bug fixes
Making DumpWriter less dependent on sequence of atoms on the other processors. Node 0 now fires potatoes at other processors to get them to send french fries back.
This commit was generated by cvs2svn to compensate for changes in r377, which included commits to RCS files with non-trunk default branches.
New OOPSE Tree
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