| 11 |
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#include "fortranWrappers.hpp" |
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|
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|
| 14 |
+ |
void ForceFields::calcRcut( void ){ |
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|
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#ifdef IS_MPI |
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double tempBig = bigSigma; |
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MPI_Allreduce( &tempBig, &bigSigma, 1, MPI_DOUBLE, MPI_MAX, |
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MPI_COMM_WORLD); |
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#endif //is_mpi |
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|
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//calc rCut and rList |
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|
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entry_plug->rCut = 2.5 * bigSigma; |
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if(entry_plug->rCut > (entry_plug->box_x / 2.0)) |
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entry_plug->rCut = entry_plug->box_x / 2.0; |
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if(entry_plug->rCut > (entry_plug->box_y / 2.0)) |
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entry_plug->rCut = entry_plug->box_y / 2.0; |
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if(entry_plug->rCut > (entry_plug->box_z / 2.0)) |
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entry_plug->rCut = entry_plug->box_z / 2.0; |
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|
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entry_plug->rList = entry_plug->rCut + 1.0; |
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|
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} |
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|
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void ForceFields::doForces( int calcPot, int calcStress ){ |
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|
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int i, isError; |
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double* frc; |
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double* pos; |
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double* trq; |
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– |
double* tau; |
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double* A; |
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< |
double* u_l; |
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> |
double* u_l;; |
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> |
DirectionalAtom* dAtom; |
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|
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double ut[3]; |
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|
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//u_l = new double[entry_plug->n_atoms]; |
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|
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short int passedCalcPot = (short int)calcPot; |
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short int passedCalcStress = (short int)calcStress; |
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|
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// forces are zeroed here, before any are acumulated. |
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// NOTE: do not rezero the forces in Fortran. |
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|
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|
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for(i=0; i<entry_plug->n_atoms; i++){ |
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entry_plug->atoms[i]->zeroForces(); |
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|
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// if( entry_plug->atoms[i]->isDirectional() ){ |
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// dAtom = (DirectionalAtom *)entry_plug->atoms[i]; |
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// dAtom->getU(ut); |
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|
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|
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// if(dAtom->getIndex()== 1){ |
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// std::cerr << "atom 2's u_l = " << ut[0] << ", " << ut[1] |
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// << ", " << ut[2] << "\n"; |
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// } |
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// } |
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|
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} |
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|
| 73 |
< |
for(i=0; i<entry_plug->n_SRI; i++ ){ |
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< |
entry_plug->sr_interactions[i]->calc_forces(); |
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> |
for(i=0; i<entry_plug->n_mol; i++ ){ |
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> |
entry_plug->molecules[i].calcForces(); |
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} |
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|
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frc = Atom::getFrcArray(); |
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A = Atom::getAmatArray(); |
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u_l = Atom::getUlArray(); |
| 82 |
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|
| 83 |
< |
tau = entry_plug->tau; |
| 45 |
< |
|
| 83 |
> |
|
| 84 |
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isError = 0; |
| 85 |
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entry_plug->lrPot = 0.0; |
| 86 |
+ |
|
| 87 |
+ |
for (i=0; i<9; i++) { |
| 88 |
+ |
entry_plug->tau[i] = 0.0; |
| 89 |
+ |
} |
| 90 |
+ |
|
| 91 |
|
fortranForceLoop( pos, |
| 92 |
|
A, |
| 93 |
|
u_l, |
| 94 |
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frc, |
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trq, |
| 96 |
< |
tau, |
| 96 |
> |
entry_plug->tau, |
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&(entry_plug->lrPot), |
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&passedCalcPot, |
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&passedCalcStress, |
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&isError ); |
| 101 |
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|
| 102 |
+ |
// delete[] u_l; |
| 103 |
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|
| 104 |
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if( isError ){ |
| 105 |
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sprintf( painCave.errMsg, |
